Wall clock time and date at job start Tue Mar 31 2020 06:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46990 * 2 1 4 4 C 1.50701 * 109.46753 * 119.99629 * 2 1 3 5 5 H 1.08006 * 119.99457 * 120.00229 * 4 2 1 6 6 C 1.37872 * 120.00313 * 300.00067 * 4 2 1 7 7 N 1.31518 * 119.99874 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99856 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47255 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46586 * 120.00026 * 8 6 4 11 11 H 1.48498 * 109.47005 * 239.99818 * 8 6 4 12 12 N 1.46891 * 109.47079 * 239.99880 * 2 1 3 13 13 C 1.46907 * 111.00321 * 306.04772 * 12 2 1 14 14 C 1.46904 * 111.00289 * 69.99841 * 12 2 1 15 15 C 1.53003 * 109.47260 * 169.99674 * 14 12 2 16 16 S 1.81394 * 109.47049 * 180.02562 * 15 14 12 17 17 O 1.42105 * 109.47009 * 70.94802 * 16 15 14 18 18 C 1.76197 * 102.99885 * 180.02562 * 16 15 14 19 19 C 1.38234 * 120.00152 * 269.72341 * 18 16 15 20 20 C 1.38235 * 120.00235 * 179.76278 * 19 18 16 21 21 C 1.38238 * 119.99962 * 0.51787 * 20 19 18 22 22 C 1.38240 * 119.99535 * 359.73839 * 21 20 19 23 23 C 1.38229 * 120.00286 * 0.02562 * 22 21 20 24 24 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47220 * 300.00206 * 1 2 3 26 26 H 1.09003 * 109.47234 * 60.00175 * 1 2 3 27 27 H 0.97000 * 119.99692 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47091 * 183.95734 * 13 12 2 29 29 H 1.09001 * 109.46553 * 303.95684 * 13 12 2 30 30 H 1.09002 * 109.47243 * 63.95274 * 13 12 2 31 31 H 1.08997 * 109.46721 * 50.00240 * 14 12 2 32 32 H 1.08995 * 109.47059 * 289.99861 * 14 12 2 33 33 H 1.08997 * 109.46791 * 60.00609 * 15 14 12 34 34 H 1.08997 * 109.47241 * 300.00852 * 15 14 12 35 35 H 1.08005 * 119.99772 * 0.02562 * 19 18 16 36 36 H 1.08002 * 119.99904 * 180.22788 * 20 19 18 37 37 H 1.07993 * 119.99897 * 179.71813 * 21 20 19 38 38 H 1.07997 * 119.99552 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.99999 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1483 -2.2855 3.6039 10 1 3.1471 -0.1856 4.8160 11 1 1.1677 -1.5865 4.8165 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4091 15 6 2.4885 -0.5257 -3.5973 16 16 2.1597 0.4498 -5.0908 17 8 2.8340 1.6974 -4.9997 18 6 3.0728 -0.4052 -6.3317 19 6 4.3854 -0.0558 -6.5881 20 6 5.1033 -0.7299 -7.5582 21 6 4.5052 -1.7463 -8.2794 22 6 3.1909 -2.0922 -8.0266 23 6 2.4746 -1.4214 -7.0531 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.7086 1.1614 3.4844 28 1 1.8665 -2.5521 -2.1648 29 1 1.6466 -2.5987 -0.3990 30 1 0.3555 -1.9521 -1.4399 31 1 2.1025 1.1188 -2.2604 32 1 0.6814 0.1052 -2.6087 33 1 2.1389 -1.5473 -3.7459 34 1 3.5600 -0.5338 -3.3975 35 1 4.8514 0.7411 -6.0275 36 1 6.1300 -0.4592 -7.7559 37 1 5.0647 -2.2699 -9.0404 38 1 2.7235 -2.8861 -8.5903 39 1 1.4477 -1.6914 -6.8560 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161787778.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:27 Heat of formation + Delta-G solvation = -28.392118 kcal Electronic energy + Delta-G solvation = -19392.633409 eV Core-core repulsion = 16426.080713 eV Total energy + Delta-G solvation = -2966.552697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85172 -39.06377 -36.89792 -35.03382 -32.38896 -31.98326 -31.85494 -29.73871 -27.31599 -26.91997 -24.03483 -23.55131 -23.22319 -20.92109 -19.06710 -18.22262 -17.99046 -17.13381 -16.56349 -16.41969 -16.11257 -15.86603 -15.44163 -15.21402 -14.98783 -14.60074 -14.33968 -14.05528 -13.72038 -13.54711 -13.30841 -13.13090 -12.78558 -12.73469 -12.58312 -12.44328 -12.39670 -12.08237 -12.05364 -11.88796 -11.62793 -11.18450 -10.87175 -10.50353 -10.20198 -9.90353 -9.37245 -8.81413 -8.11194 -6.22448 -0.06806 0.42683 0.91645 1.40102 1.42085 1.53928 1.79784 2.42360 2.70487 2.94826 3.17511 3.54036 3.92266 3.99310 4.06892 4.09872 4.20533 4.52266 4.55535 4.59096 4.63183 4.78282 4.82119 4.85793 4.91463 4.96485 5.06119 5.07948 5.18800 5.31127 5.34234 5.40937 5.51251 5.54863 5.71577 5.82780 6.02576 6.23004 6.52313 6.75620 6.91967 7.47056 8.94998 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032698 B = 0.003389 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.112096 B = 8260.924770 C = 8462.863481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.210 3.790 3 H -0.006 1.006 4 C -0.514 4.514 5 H 0.055 0.945 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.553 5.553 13 C 0.035 3.965 14 C 0.072 3.928 15 C -0.439 4.439 16 S 1.393 4.607 17 O -0.921 6.921 18 C -0.472 4.472 19 C -0.090 4.090 20 C -0.152 4.152 21 C -0.089 4.089 22 C -0.137 4.137 23 C -0.039 4.039 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.033 0.967 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.146 0.854 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.165 0.835 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 -9.157 -23.361 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.103 3.897 3 H 0.012 0.988 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.193 1.193 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.277 5.277 13 C -0.113 4.113 14 C -0.057 4.057 15 C -0.575 4.575 16 S 1.592 4.408 17 O -0.916 6.916 18 C -0.570 4.570 19 C -0.109 4.109 20 C -0.172 4.172 21 C -0.107 4.107 22 C -0.156 4.156 23 C -0.058 4.058 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.182 0.818 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.585 -8.258 -23.263 24.736 hybrid contribution 2.208 0.251 1.687 2.790 sum 0.624 -8.007 -21.576 23.022 Atomic orbital electron populations 1.22195 0.99405 0.99877 1.00302 1.19101 0.90803 0.92369 0.87433 0.98838 1.21414 1.30465 1.12386 0.90989 0.92691 1.25718 0.95465 0.95861 1.01901 1.70030 1.37987 1.24219 1.23939 0.85469 0.78135 0.78530 0.79248 1.19288 1.21070 1.20202 1.62201 1.59806 1.03801 1.01905 1.22290 0.97163 0.90189 1.01675 1.21587 0.98473 0.95925 0.89761 1.27846 1.05417 1.12926 1.11300 1.68591 1.10116 0.78693 0.83388 1.92977 1.76325 1.37160 1.85181 1.27702 1.03855 1.10314 1.15161 1.21168 0.94674 0.97682 0.97380 1.21463 1.00786 0.97784 0.97121 1.21757 0.96024 0.95073 0.97828 1.21802 0.94472 1.00821 0.98512 1.21459 1.01487 0.90610 0.92257 0.93889 0.92247 0.94934 0.92983 0.90205 0.93168 0.94885 0.94470 0.91886 0.83583 0.91651 0.88781 0.85141 0.83062 0.81787 0.80112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.54 8.22 71.98 0.59 -6.95 16 2 C 0.21 10.95 2.31 44.17 0.10 11.05 16 3 H -0.01 -0.38 7.93 -2.39 -0.02 -0.40 16 4 C -0.51 -28.97 7.91 25.60 0.20 -28.77 16 5 H 0.05 3.11 7.12 -2.91 -0.02 3.09 16 6 C 0.01 0.49 5.30 84.65 0.45 0.94 16 7 N -0.92 -54.01 11.32 21.45 0.24 -53.76 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 12 N -0.55 -23.83 4.70 -901.46 -4.24 -28.07 16 13 C 0.03 1.24 8.45 127.69 1.08 2.32 16 14 C 0.07 2.55 4.54 86.30 0.39 2.94 16 15 C -0.44 -11.92 5.81 71.98 0.42 -11.51 16 16 S 1.39 31.65 13.55 -56.49 -0.77 30.88 16 17 O -0.92 -34.51 16.90 -148.98 -2.52 -37.03 16 18 C -0.47 -10.06 5.61 22.27 0.12 -9.94 16 19 C -0.09 -2.35 9.44 22.27 0.21 -2.14 16 20 C -0.15 -3.11 10.05 22.27 0.22 -2.89 16 21 C -0.09 -1.29 10.05 22.27 0.22 -1.06 16 22 C -0.14 -1.61 10.05 22.27 0.22 -1.39 16 23 C -0.04 -0.51 9.75 22.27 0.22 -0.30 16 24 H 0.04 1.91 6.42 -2.39 -0.02 1.90 16 25 H 0.06 3.19 6.07 -2.38 -0.01 3.18 16 26 H 0.03 1.34 6.91 -2.39 -0.02 1.32 16 27 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.08 2.23 6.47 -2.39 -0.02 2.22 16 29 H 0.05 2.01 6.76 -2.39 -0.02 1.99 16 30 H 0.03 1.08 6.46 -2.39 -0.02 1.06 16 31 H 0.04 1.53 7.93 -2.39 -0.02 1.51 16 32 H 0.06 1.88 7.06 -2.39 -0.02 1.86 16 33 H 0.15 2.91 6.55 -2.39 -0.02 2.89 16 34 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.09 2.98 7.45 -2.91 -0.02 2.96 16 36 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 38 H 0.16 0.75 8.06 -2.91 -0.02 0.72 16 39 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 Total: -1.00 -80.51 326.62 0.24 -80.28 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.03 Total: 8.83 kcal Atomic # 6 Polarization: -52.14 SS G_CDS: 4.46 Total: -47.69 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -4.00 Total: -81.83 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -2.52 Total: -37.03 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 31.65 SS G_CDS: -0.77 Total: 30.88 kcal Total: -80.51 0.24 -80.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161787778.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.885 kcal (2) G-P(sol) polarization free energy of solvation -80.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds