Wall clock time and date at job start Tue Mar 31 2020 06:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47118 * 2 1 4 4 C 1.50697 * 109.46895 * 120.00329 * 2 1 3 5 5 H 1.08000 * 120.00291 * 117.21140 * 4 2 1 6 6 C 1.37877 * 120.00083 * 297.20650 * 4 2 1 7 7 N 1.31512 * 120.00015 * 352.14210 * 6 4 2 8 8 Si 1.86798 * 120.00211 * 172.41552 * 6 4 2 9 9 H 1.48492 * 109.47429 * 264.84712 * 8 6 4 10 10 H 1.48498 * 109.46966 * 24.85053 * 8 6 4 11 11 H 1.48500 * 109.47172 * 144.84646 * 8 6 4 12 12 N 1.46903 * 109.46844 * 240.00007 * 2 1 3 13 13 C 1.46904 * 111.00027 * 306.05083 * 12 2 1 14 14 C 1.46904 * 110.99788 * 70.00080 * 12 2 1 15 15 C 1.50703 * 109.46827 * 169.99836 * 14 12 2 16 16 C 1.38237 * 119.99965 * 269.72945 * 15 14 12 17 17 C 1.38237 * 119.99466 * 179.74562 * 16 15 14 18 18 C 1.38233 * 120.00320 * 0.52886 * 17 16 15 19 19 S 1.76201 * 120.00004 * 179.77080 * 18 17 16 20 20 C 1.81402 * 102.99698 * 269.97528 * 19 18 17 21 21 O 1.42098 * 102.99971 * 156.12261 * 19 18 17 22 22 C 1.38236 * 119.99976 * 359.74378 * 18 17 16 23 23 C 1.38236 * 120.00077 * 359.97438 * 22 18 17 24 24 H 1.09003 * 109.46946 * 306.31115 * 1 2 3 25 25 H 1.09000 * 109.47069 * 66.30766 * 1 2 3 26 26 H 1.08995 * 109.47495 * 186.30857 * 1 2 3 27 27 H 0.96996 * 120.00561 * 180.27872 * 7 6 4 28 28 H 1.08997 * 109.47023 * 59.99455 * 13 12 2 29 29 H 1.09000 * 109.46752 * 180.02562 * 13 12 2 30 30 H 1.09006 * 109.46629 * 299.99553 * 13 12 2 31 31 H 1.09000 * 109.47277 * 289.99892 * 14 12 2 32 32 H 1.08997 * 109.47281 * 50.00128 * 14 12 2 33 33 H 1.07992 * 119.99933 * 359.97438 * 16 15 14 34 34 H 1.08000 * 119.99719 * 180.29516 * 17 16 15 35 35 H 1.08998 * 109.47483 * 60.00314 * 20 19 18 36 36 H 1.09002 * 109.46702 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46687 * 299.99725 * 20 19 18 38 38 H 1.08002 * 120.00206 * 180.02562 * 22 18 17 39 39 H 1.07999 * 120.00196 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6155 -1.6141 1.1320 6 6 1.7474 -0.2068 2.4819 7 7 1.1732 0.9702 2.6019 8 14 2.1838 -1.1930 4.0071 9 1 1.0008 -1.9761 4.4456 10 1 3.3022 -2.1187 3.6948 11 1 2.5955 -0.2681 5.0936 12 7 2.0197 -0.6925 -1.1995 13 6 1.4341 -2.0355 -1.3079 14 6 1.7529 0.0973 -2.4091 15 6 2.4773 -0.5163 -3.5795 16 6 3.7634 -0.1119 -3.8853 17 6 4.4298 -0.6785 -4.9558 18 6 3.8062 -1.6415 -5.7269 19 16 4.6535 -2.3594 -7.0949 20 6 4.2090 -1.2637 -8.4706 21 8 3.9992 -3.6105 -7.2554 22 6 2.5181 -2.0418 -5.4244 23 6 1.8538 -1.4794 -4.3505 24 1 -0.3633 0.6086 0.8281 25 1 -0.3633 0.4129 -0.9411 26 1 -0.3634 -1.0214 0.1129 27 1 0.9764 1.3264 3.4824 28 1 0.3489 -1.9548 -1.3693 29 1 1.8138 -2.5260 -2.2042 30 1 1.7058 -2.6221 -0.4303 31 1 0.6813 0.1054 -2.6087 32 1 2.1025 1.1189 -2.2604 33 1 4.2487 0.6439 -3.2859 34 1 5.4363 -0.3661 -5.1919 35 1 4.5478 -0.2509 -8.2527 36 1 4.6849 -1.6175 -9.3852 37 1 3.1268 -1.2647 -8.6007 38 1 2.0311 -2.7945 -6.0266 39 1 0.8476 -1.7925 -4.1139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175174470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:05 Heat of formation + Delta-G solvation = -5.219298 kcal Electronic energy + Delta-G solvation = -19606.024387 eV Core-core repulsion = 16640.476539 eV Total energy + Delta-G solvation = -2965.547848 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.33088 -36.97948 -35.82105 -33.08031 -31.43582 -30.88317 -29.03714 -28.50426 -26.74864 -25.23070 -23.85439 -22.59023 -21.21303 -19.26254 -18.12709 -16.67836 -16.21547 -15.44639 -15.37149 -15.03811 -14.88671 -14.30726 -14.07092 -13.81323 -13.51120 -13.31960 -13.19643 -12.76903 -12.64537 -12.38895 -12.06607 -11.76074 -11.38957 -11.18387 -11.09045 -10.92323 -10.79860 -10.73419 -10.47869 -10.29163 -10.12758 -9.79878 -9.05667 -8.89945 -8.81135 -8.44651 -8.37259 -7.22415 -6.05204 -4.05259 0.95476 1.50282 1.82186 2.59670 3.29961 3.37189 3.41272 3.65234 3.89071 4.41512 4.88655 4.95394 5.00038 5.04328 5.07519 5.22897 5.30179 5.50596 5.54908 5.72938 5.81809 5.88254 6.10054 6.15759 6.21431 6.32543 6.33924 6.40692 6.60120 6.71625 6.80997 6.81563 7.01630 7.05764 7.38402 7.55787 7.82151 8.07151 8.27962 8.54615 9.00001 9.58613 11.04421 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036427 B = 0.003369 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.465740 B = 8309.790413 C = 8469.975931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.044 0.956 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.287 1.287 12 N -0.525 5.525 13 C 0.029 3.971 14 C 0.081 3.919 15 C -0.020 4.020 16 C -0.118 4.118 17 C -0.046 4.046 18 C -0.471 4.471 19 S 1.330 4.670 20 C -0.499 4.499 21 O -0.862 6.862 22 C -0.056 4.056 23 C -0.131 4.131 24 H 0.073 0.927 25 H 0.009 0.991 26 H 0.035 0.965 27 H 0.260 0.740 28 H 0.018 0.982 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.742 -0.808 -18.560 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.104 3.896 3 H 0.062 0.938 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.722 3.278 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.213 1.213 12 N -0.249 5.249 13 C -0.119 4.119 14 C -0.047 4.047 15 C -0.021 4.021 16 C -0.138 4.138 17 C -0.066 4.066 18 C -0.569 4.569 19 S 1.528 4.472 20 C -0.655 4.655 21 O -0.858 6.858 22 C -0.075 4.075 23 C -0.151 4.151 24 H 0.092 0.908 25 H 0.028 0.972 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.036 0.964 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.098 0.902 38 H 0.139 0.861 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.749 -1.541 -18.395 20.428 hybrid contribution -3.212 -0.141 0.686 3.287 sum 5.537 -1.683 -17.709 18.631 Atomic orbital electron populations 1.22355 1.01100 1.00155 0.98983 1.19360 0.89434 0.94849 0.85937 0.93832 1.21074 1.33028 1.10266 0.89512 0.91893 1.24918 0.95426 0.94805 0.98962 1.69945 1.43410 1.16390 1.23551 0.86545 0.78619 0.79991 0.82661 1.20877 1.19766 1.21305 1.62416 1.58786 1.02322 1.01347 1.22324 0.96306 0.91991 1.01280 1.21160 0.96684 0.97690 0.89211 1.20253 0.94280 0.93559 0.94013 1.21195 0.94382 1.00934 0.97269 1.20784 0.98826 0.93254 0.93699 1.27387 1.04155 1.09521 1.15822 1.69331 1.12925 0.81224 0.83718 1.27783 1.08019 1.13843 1.15896 1.93093 1.76185 1.32647 1.83882 1.20983 0.93512 0.96716 0.96281 1.21171 1.00452 0.97617 0.95846 0.90795 0.97181 0.94638 0.93010 0.96395 0.93548 0.90907 0.94596 0.90247 0.85151 0.84911 0.87163 0.87962 0.90198 0.86141 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.05 37.16 0.30 -3.63 16 2 C 0.21 5.18 2.20 -68.86 -0.15 5.02 16 3 H 0.04 1.18 7.93 -51.93 -0.41 0.76 16 4 C -0.50 -13.58 7.98 -34.44 -0.27 -13.85 16 5 H 0.06 1.73 7.01 -52.49 -0.37 1.36 16 6 C 0.06 1.65 5.24 -17.82 -0.09 1.56 16 7 N -0.89 -25.32 11.95 55.43 0.66 -24.65 16 8 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.53 -11.12 4.69 -237.72 -1.12 -12.23 16 13 C 0.03 0.59 8.47 60.07 0.51 1.10 16 14 C 0.08 1.43 4.70 -4.97 -0.02 1.41 16 15 C -0.02 -0.32 4.89 -104.62 -0.51 -0.83 16 16 C -0.12 -1.59 9.70 -39.58 -0.38 -1.98 16 17 C -0.05 -0.49 9.75 -39.58 -0.39 -0.88 16 18 C -0.47 -5.53 5.61 -39.58 -0.22 -5.75 16 19 S 1.33 11.28 14.19 -107.50 -1.53 9.76 16 20 C -0.50 -3.53 10.70 101.05 1.08 -2.45 16 21 O -0.86 -13.16 16.90 -35.23 -0.60 -13.75 16 22 C -0.06 -0.80 9.44 -39.58 -0.37 -1.18 16 23 C -0.13 -1.98 7.91 -39.58 -0.31 -2.29 16 24 H 0.07 1.91 6.78 -51.93 -0.35 1.56 16 25 H 0.01 0.20 6.66 -51.93 -0.35 -0.15 16 26 H 0.03 0.82 6.71 -51.93 -0.35 0.47 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.02 0.35 6.35 -51.93 -0.33 0.02 16 29 H 0.05 0.84 5.89 -51.93 -0.31 0.54 16 30 H 0.07 1.55 6.80 -51.93 -0.35 1.20 16 31 H 0.04 0.64 6.87 -51.93 -0.36 0.28 16 32 H 0.08 1.38 7.87 -51.93 -0.41 0.97 16 33 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 38 H 0.12 1.78 7.45 -52.49 -0.39 1.39 16 39 H 0.12 1.74 7.98 -52.49 -0.42 1.32 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -34.41 326.41 -9.16 -43.57 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.64 Total: -0.11 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -0.84 Total: -23.74 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.45 Total: -36.89 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.60 Total: -13.75 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 11.28 SS G_CDS: -1.53 Total: 9.76 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.41 -9.16 -43.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175174470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.348 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds