Wall clock time and date at job start Tue Mar 31 2020 06:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47118 * 2 1 4 4 C 1.50697 * 109.46895 * 120.00329 * 2 1 3 5 5 H 1.08000 * 120.00291 * 117.21140 * 4 2 1 6 6 C 1.37877 * 120.00083 * 297.20650 * 4 2 1 7 7 N 1.31512 * 120.00015 * 352.14210 * 6 4 2 8 8 Si 1.86798 * 120.00211 * 172.41552 * 6 4 2 9 9 H 1.48492 * 109.47429 * 264.84712 * 8 6 4 10 10 H 1.48498 * 109.46966 * 24.85053 * 8 6 4 11 11 H 1.48500 * 109.47172 * 144.84646 * 8 6 4 12 12 N 1.46903 * 109.46844 * 240.00007 * 2 1 3 13 13 C 1.46904 * 111.00027 * 306.05083 * 12 2 1 14 14 C 1.46904 * 110.99788 * 70.00080 * 12 2 1 15 15 C 1.50703 * 109.46827 * 169.99836 * 14 12 2 16 16 C 1.38237 * 119.99965 * 269.72945 * 15 14 12 17 17 C 1.38237 * 119.99466 * 179.74562 * 16 15 14 18 18 C 1.38233 * 120.00320 * 0.52886 * 17 16 15 19 19 S 1.76201 * 120.00004 * 179.77080 * 18 17 16 20 20 C 1.81402 * 102.99698 * 269.97528 * 19 18 17 21 21 O 1.42098 * 102.99971 * 156.12261 * 19 18 17 22 22 C 1.38236 * 119.99976 * 359.74378 * 18 17 16 23 23 C 1.38236 * 120.00077 * 359.97438 * 22 18 17 24 24 H 1.09003 * 109.46946 * 306.31115 * 1 2 3 25 25 H 1.09000 * 109.47069 * 66.30766 * 1 2 3 26 26 H 1.08995 * 109.47495 * 186.30857 * 1 2 3 27 27 H 0.96996 * 120.00561 * 180.27872 * 7 6 4 28 28 H 1.08997 * 109.47023 * 59.99455 * 13 12 2 29 29 H 1.09000 * 109.46752 * 180.02562 * 13 12 2 30 30 H 1.09006 * 109.46629 * 299.99553 * 13 12 2 31 31 H 1.09000 * 109.47277 * 289.99892 * 14 12 2 32 32 H 1.08997 * 109.47281 * 50.00128 * 14 12 2 33 33 H 1.07992 * 119.99933 * 359.97438 * 16 15 14 34 34 H 1.08000 * 119.99719 * 180.29516 * 17 16 15 35 35 H 1.08998 * 109.47483 * 60.00314 * 20 19 18 36 36 H 1.09002 * 109.46702 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.46687 * 299.99725 * 20 19 18 38 38 H 1.08002 * 120.00206 * 180.02562 * 22 18 17 39 39 H 1.07999 * 120.00196 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6155 -1.6141 1.1320 6 6 1.7474 -0.2068 2.4819 7 7 1.1732 0.9702 2.6019 8 14 2.1838 -1.1930 4.0071 9 1 1.0008 -1.9761 4.4456 10 1 3.3022 -2.1187 3.6948 11 1 2.5955 -0.2681 5.0936 12 7 2.0197 -0.6925 -1.1995 13 6 1.4341 -2.0355 -1.3079 14 6 1.7529 0.0973 -2.4091 15 6 2.4773 -0.5163 -3.5795 16 6 3.7634 -0.1119 -3.8853 17 6 4.4298 -0.6785 -4.9558 18 6 3.8062 -1.6415 -5.7269 19 16 4.6535 -2.3594 -7.0949 20 6 4.2090 -1.2637 -8.4706 21 8 3.9992 -3.6105 -7.2554 22 6 2.5181 -2.0418 -5.4244 23 6 1.8538 -1.4794 -4.3505 24 1 -0.3633 0.6086 0.8281 25 1 -0.3633 0.4129 -0.9411 26 1 -0.3634 -1.0214 0.1129 27 1 0.9764 1.3264 3.4824 28 1 0.3489 -1.9548 -1.3693 29 1 1.8138 -2.5260 -2.2042 30 1 1.7058 -2.6221 -0.4303 31 1 0.6813 0.1054 -2.6087 32 1 2.1025 1.1189 -2.2604 33 1 4.2487 0.6439 -3.2859 34 1 5.4363 -0.3661 -5.1919 35 1 4.5478 -0.2509 -8.2527 36 1 4.6849 -1.6175 -9.3852 37 1 3.1268 -1.2647 -8.6007 38 1 2.0311 -2.7945 -6.0266 39 1 0.8476 -1.7925 -4.1139 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175174470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:04 Heat of formation + Delta-G solvation = -29.285600 kcal Electronic energy + Delta-G solvation = -19607.067980 eV Core-core repulsion = 16640.476539 eV Total energy + Delta-G solvation = -2966.591441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49556 -38.58187 -36.83218 -34.93263 -32.88385 -31.91360 -30.33923 -29.58456 -28.20660 -27.26510 -25.42032 -23.62777 -22.52999 -21.00630 -19.00001 -18.28774 -17.53916 -17.07753 -16.57771 -16.27853 -16.10145 -15.73043 -15.27893 -15.06413 -14.70080 -14.54761 -14.41323 -14.21362 -13.69422 -13.64723 -13.44056 -13.03103 -12.88388 -12.76237 -12.68118 -12.64926 -12.43396 -12.33271 -12.15024 -11.90567 -11.69400 -11.21818 -10.99784 -10.48361 -10.02275 -9.85018 -9.29741 -8.91821 -8.14452 -6.21290 -0.02314 0.46426 1.03057 1.41255 1.42942 1.53461 1.84562 2.42222 2.66766 3.04706 3.16804 3.50310 3.84787 3.89198 4.08859 4.29021 4.37044 4.47156 4.51711 4.55214 4.61031 4.65784 4.73911 4.77435 4.81667 4.93068 5.04444 5.09371 5.12698 5.21274 5.32057 5.32831 5.46105 5.62451 5.69988 5.72963 6.03563 6.14892 6.42094 6.67229 6.90269 7.46581 8.94413 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036427 B = 0.003369 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.465740 B = 8309.790413 C = 8469.975931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.215 3.785 3 H 0.015 0.985 4 C -0.515 4.515 5 H 0.054 0.946 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.955 3.045 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.283 1.283 12 N -0.534 5.534 13 C 0.038 3.962 14 C 0.086 3.914 15 C -0.043 4.043 16 C -0.128 4.128 17 C -0.030 4.030 18 C -0.474 4.474 19 S 1.403 4.597 20 C -0.496 4.496 21 O -0.930 6.930 22 C -0.078 4.078 23 C -0.143 4.143 24 H 0.048 0.952 25 H 0.029 0.971 26 H 0.033 0.967 27 H 0.262 0.738 28 H 0.018 0.982 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.139 0.861 34 H 0.191 0.809 35 H 0.141 0.859 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.108 0.892 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.805 -0.674 -20.058 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.108 3.892 3 H 0.033 0.967 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.204 1.204 10 H -0.194 1.194 11 H -0.208 1.208 12 N -0.257 5.257 13 C -0.110 4.110 14 C -0.042 4.042 15 C -0.043 4.043 16 C -0.147 4.147 17 C -0.048 4.048 18 C -0.569 4.569 19 S 1.601 4.399 20 C -0.654 4.654 21 O -0.926 6.926 22 C -0.097 4.097 23 C -0.162 4.162 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.157 0.843 34 H 0.208 0.792 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.805 -1.419 -19.881 22.672 hybrid contribution -3.787 -0.127 0.970 3.911 sum 7.018 -1.546 -18.912 20.231 Atomic orbital electron populations 1.22158 1.00528 0.99551 0.98944 1.19104 0.89723 0.93341 0.86982 0.96689 1.21328 1.33072 1.10111 0.90870 0.92736 1.25645 0.95420 0.95627 1.01692 1.70052 1.44222 1.17570 1.24189 0.85587 0.78444 0.78658 0.79225 1.20437 1.19359 1.20836 1.62281 1.58917 1.02851 1.01636 1.22227 0.96296 0.91325 1.01154 1.21111 0.96960 0.97404 0.88690 1.20081 0.95555 0.94843 0.93856 1.21479 0.93647 1.01287 0.98297 1.21364 1.00703 0.91310 0.91472 1.27910 1.03092 1.09005 1.16942 1.68530 1.10312 0.78725 0.82339 1.27754 1.06947 1.15065 1.15632 1.92972 1.77405 1.37216 1.84998 1.21026 0.95023 0.97205 0.96412 1.21127 1.00486 0.98106 0.96523 0.93299 0.95193 0.94806 0.92927 0.96335 0.91889 0.92659 0.94952 0.90347 0.84270 0.79215 0.84011 0.85957 0.92234 0.87427 0.86878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.33 8.05 71.98 0.58 -6.75 16 2 C 0.22 10.85 2.20 44.17 0.10 10.95 16 3 H 0.02 0.84 7.93 -2.39 -0.02 0.82 16 4 C -0.52 -28.41 7.98 25.60 0.20 -28.21 16 5 H 0.05 3.04 7.01 -2.91 -0.02 3.02 16 6 C 0.02 0.83 5.24 84.65 0.44 1.27 16 7 N -0.92 -52.91 11.95 21.45 0.26 -52.66 16 8 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 N -0.53 -22.85 4.69 -906.01 -4.25 -27.11 16 13 C 0.04 1.54 8.47 127.69 1.08 2.62 16 14 C 0.09 3.08 4.70 85.56 0.40 3.48 16 15 C -0.04 -1.31 4.89 -19.86 -0.10 -1.41 16 16 C -0.13 -3.16 9.70 22.27 0.22 -2.94 16 17 C -0.03 -0.52 9.75 22.27 0.22 -0.31 16 18 C -0.47 -9.95 5.61 22.27 0.12 -9.83 16 19 S 1.40 19.81 14.19 -56.49 -0.80 19.01 16 20 C -0.50 -5.14 10.70 113.37 1.21 -3.93 16 21 O -0.93 -27.43 16.90 -148.98 -2.52 -29.95 16 22 C -0.08 -2.20 9.44 22.27 0.21 -1.99 16 23 C -0.14 -4.32 7.91 22.27 0.18 -4.14 16 24 H 0.05 2.58 6.78 -2.39 -0.02 2.56 16 25 H 0.03 1.27 6.66 -2.39 -0.02 1.25 16 26 H 0.03 1.59 6.71 -2.39 -0.02 1.57 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.02 0.73 6.35 -2.39 -0.02 0.71 16 29 H 0.06 2.31 5.89 -2.39 -0.01 2.29 16 30 H 0.05 2.39 6.80 -2.38 -0.02 2.37 16 31 H 0.03 1.16 6.87 -2.39 -0.02 1.15 16 32 H 0.08 2.76 7.87 -2.39 -0.02 2.74 16 33 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.19 1.08 8.06 -2.91 -0.02 1.06 16 35 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.11 3.27 7.45 -2.91 -0.02 3.25 16 39 H 0.11 3.41 7.98 -2.91 -0.02 3.39 16 Total: -1.00 -76.55 326.41 0.61 -75.94 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 1.03 Total: 10.10 kcal Atomic # 6 Polarization: -46.04 SS G_CDS: 4.87 Total: -41.17 kcal Atomic # 7 Polarization: -75.77 SS G_CDS: -4.00 Total: -79.76 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -2.52 Total: -29.95 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 19.81 SS G_CDS: -0.80 Total: 19.01 kcal Total: -76.55 0.61 -75.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175174470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.654 kcal (2) G-P(sol) polarization free energy of solvation -76.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds