Wall clock time and date at job start Tue Mar 31 2020 06:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47182 * 2 1 4 4 N 1.46906 * 109.47135 * 119.99808 * 2 1 3 5 5 C 1.46901 * 110.99831 * 274.99806 * 4 2 1 6 6 C 1.53000 * 109.46872 * 179.97438 * 5 4 2 7 7 C 1.52996 * 109.47150 * 180.02562 * 6 5 4 8 8 S 1.80998 * 109.47360 * 180.02562 * 7 6 5 9 9 C 1.76194 * 100.00418 * 179.97438 * 8 7 6 10 10 H 1.08005 * 119.99880 * 0.02562 * 9 8 7 11 11 C 1.38803 * 120.00427 * 179.97438 * 9 8 7 12 12 N 1.31631 * 119.99547 * 0.02562 * 11 9 8 13 13 Si 1.86791 * 120.00102 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47222 * 90.00226 * 13 11 9 15 15 H 1.48501 * 109.47342 * 210.00127 * 13 11 9 16 16 H 1.48503 * 109.47426 * 330.00362 * 13 11 9 17 17 C 1.50694 * 109.47155 * 239.99893 * 2 1 3 18 18 C 1.38295 * 119.97322 * 280.00009 * 17 2 1 19 19 C 1.38243 * 120.11401 * 179.70128 * 18 17 2 20 20 C 1.38169 * 120.05492 * 0.02562 * 19 18 17 21 21 C 1.38712 * 119.94061 * 0.02562 * 20 19 18 22 22 O 1.35906 * 120.04954 * 180.02562 * 21 20 19 23 23 C 1.38122 * 119.97595 * 99.72480 * 17 2 1 24 24 H 1.09000 * 109.46982 * 300.00446 * 1 2 3 25 25 H 1.08997 * 109.47297 * 60.00043 * 1 2 3 26 26 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 27 27 H 1.00900 * 110.99633 * 38.95391 * 4 2 1 28 28 H 1.08995 * 109.47269 * 299.99749 * 5 4 2 29 29 H 1.08998 * 109.46819 * 60.00295 * 5 4 2 30 30 H 1.09003 * 109.47320 * 300.00410 * 6 5 4 31 31 H 1.09002 * 109.47147 * 60.00166 * 6 5 4 32 32 H 1.09003 * 109.47115 * 300.00256 * 7 6 5 33 33 H 1.08994 * 109.47524 * 59.99943 * 7 6 5 34 34 H 0.97007 * 119.99756 * 179.97438 * 12 11 9 35 35 H 1.07997 * 119.93892 * 359.72353 * 18 17 2 36 36 H 1.07998 * 119.97188 * 180.02562 * 19 18 17 37 37 H 1.08000 * 120.02729 * 180.02562 * 20 19 18 38 38 H 0.96705 * 113.99756 * 90.00200 * 22 21 20 39 39 H 1.08002 * 120.02294 * 0.25466 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0825 0.2227 2.3469 6 6 2.5951 -0.5330 3.5745 7 6 2.6599 0.4199 4.7697 8 16 3.2670 -0.4739 6.2218 9 6 3.2426 0.8244 7.4127 10 1 2.9139 1.8128 7.1273 11 6 3.6448 0.5768 8.7179 12 7 4.0450 -0.6280 9.0658 13 14 3.6196 1.9534 9.9801 14 1 2.2976 1.9811 10.6560 15 1 4.6857 1.7211 10.9874 16 1 3.8553 3.2526 9.3005 17 6 2.0323 -0.7104 -1.2304 18 6 2.0665 -2.0925 -1.2647 19 6 2.5210 -2.7473 -2.3942 20 6 2.9428 -2.0219 -3.4919 21 6 2.9105 -0.6355 -3.4596 22 8 3.3244 0.0801 -4.5382 23 6 2.4529 0.0192 -2.3252 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.4495 -1.4979 1.4101 28 1 2.7589 1.0462 2.1182 29 1 1.0871 0.6164 2.5525 30 1 1.9184 -1.3565 3.8030 31 1 3.5904 -0.9271 3.3691 32 1 3.3364 1.2435 4.5414 33 1 1.6645 0.8136 4.9749 34 1 4.3264 -0.8011 9.9778 35 1 1.7372 -2.6612 -0.4076 36 1 2.5463 -3.8267 -2.4186 37 1 3.2974 -2.5339 -4.3742 38 1 2.6221 0.2757 -5.1736 39 1 2.4257 1.0986 -2.2981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181580682.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:00 Heat of formation + Delta-G solvation = -38.352273 kcal Electronic energy + Delta-G solvation = -18439.474265 eV Core-core repulsion = 15472.489663 eV Total energy + Delta-G solvation = -2966.984602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 4.28 seconds Orbital eigenvalues (eV) -40.11107 -37.95499 -36.36261 -33.70351 -32.41695 -31.01594 -29.80707 -28.88548 -25.74533 -24.93299 -23.53880 -22.75800 -21.18681 -20.77398 -18.18283 -17.42508 -16.74888 -16.16888 -15.72239 -15.43295 -14.86248 -14.78864 -14.60349 -14.12941 -13.91593 -13.71199 -13.30853 -12.90410 -12.62098 -12.41482 -12.22244 -12.11146 -11.77254 -11.50253 -11.40506 -11.27234 -11.06193 -10.80534 -10.69531 -10.56120 -10.41723 -9.52857 -9.07587 -9.04723 -8.77008 -8.47224 -8.28489 -6.51227 -6.21577 -3.91608 1.05955 1.11918 3.21987 3.23040 3.29821 3.40518 3.56058 3.86254 4.20472 4.25085 4.52701 4.67765 4.87248 4.91328 5.00526 5.14303 5.14483 5.26201 5.26905 5.35820 5.43123 5.53019 5.56824 5.67705 5.73070 5.74913 5.86419 5.93650 6.09763 6.18970 6.22568 6.33615 6.37139 6.60319 6.61546 6.75128 7.00303 7.30340 7.38466 7.61645 8.37803 9.24651 10.86620 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038596 B = 0.002401 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.298079 B =11656.842456 C =11788.605917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.120 3.880 3 H 0.087 0.913 4 N -0.681 5.681 5 C 0.064 3.936 6 C -0.096 4.096 7 C -0.112 4.112 8 S -0.133 6.133 9 C -0.516 4.516 10 H 0.072 0.928 11 C 0.070 3.930 12 N -0.870 5.870 13 Si 0.918 3.082 14 H -0.277 1.277 15 H -0.282 1.282 16 H -0.272 1.272 17 C -0.047 4.047 18 C -0.106 4.106 19 C -0.105 4.105 20 C -0.152 4.152 21 C 0.101 3.899 22 O -0.501 6.501 23 C -0.142 4.142 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.341 0.659 28 H 0.071 0.929 29 H 0.030 0.970 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.267 0.733 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.387 0.613 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.488 -0.970 -25.079 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.010 3.990 3 H 0.105 0.895 4 N -0.312 5.312 5 C -0.066 4.066 6 C -0.134 4.134 7 C -0.261 4.261 8 S 0.095 5.905 9 C -0.664 4.664 10 H 0.090 0.910 11 C -0.139 4.139 12 N -0.505 5.505 13 Si 0.745 3.255 14 H -0.203 1.203 15 H -0.207 1.207 16 H -0.197 1.197 17 C -0.048 4.048 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.170 4.170 21 C 0.057 3.943 22 O -0.310 6.310 23 C -0.161 4.161 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.160 0.840 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.243 0.757 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.884 -2.108 -24.673 25.452 hybrid contribution -1.693 2.277 0.657 2.912 sum -7.577 0.168 -24.016 25.183 Atomic orbital electron populations 1.22486 0.96077 1.02579 1.02523 1.20458 0.92729 0.97504 0.88324 0.89509 1.60570 1.57136 1.09911 1.03554 1.22066 0.99381 0.95410 0.89792 1.21244 1.02497 0.97819 0.91881 1.23215 1.02692 1.01286 0.98922 1.84635 1.85523 1.18752 1.01553 1.22691 1.50971 0.96737 0.96019 0.90999 1.25020 0.94640 0.96431 0.97762 1.70028 1.41407 1.20058 1.19040 0.86165 0.77969 0.81181 0.80207 1.20300 1.20746 1.19699 1.19680 0.97252 0.93747 0.94097 1.20980 0.99709 0.93901 0.97793 1.21045 0.98319 0.99963 0.92938 1.21389 1.02360 0.93307 0.99973 1.18405 0.98128 0.89677 0.88106 1.84848 1.38514 1.74443 1.33239 1.21246 1.00825 1.00329 0.93707 0.91949 0.91965 0.92080 0.83984 0.91035 0.95188 0.91825 0.90688 0.92125 0.92370 0.92322 0.85656 0.85650 0.85745 0.75729 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 9.14 37.16 0.34 -1.13 16 2 C 0.12 1.18 2.79 -68.86 -0.19 0.98 16 3 H 0.09 0.87 7.66 -51.93 -0.40 0.47 16 4 N -0.68 -7.74 5.70 -107.95 -0.62 -8.36 16 5 C 0.06 0.83 5.48 -3.82 -0.02 0.81 16 6 C -0.10 -1.55 5.48 -26.73 -0.15 -1.70 16 7 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 8 S -0.13 -3.51 21.44 -107.50 -2.30 -5.82 16 9 C -0.52 -14.93 9.50 30.94 0.29 -14.64 16 10 H 0.07 2.01 7.80 -52.48 -0.41 1.61 16 11 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 12 N -0.87 -26.19 13.22 55.49 0.73 -25.46 16 13 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 17 C -0.05 -0.47 4.95 -104.65 -0.52 -0.99 16 18 C -0.11 -1.02 9.32 -39.56 -0.37 -1.39 16 19 C -0.10 -0.93 10.04 -39.60 -0.40 -1.33 16 20 C -0.15 -1.38 9.99 -39.43 -0.39 -1.78 16 21 C 0.10 0.99 6.70 -39.22 -0.26 0.73 16 22 O -0.50 -4.36 13.50 -19.44 -0.26 -4.62 16 23 C -0.14 -1.41 9.61 -39.44 -0.38 -1.79 16 24 H 0.06 0.54 7.45 -51.93 -0.39 0.15 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 27 H 0.34 3.53 7.82 -39.29 -0.31 3.23 16 28 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 29 H 0.03 0.37 7.44 -51.93 -0.39 -0.01 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 33 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.13 1.10 7.24 -52.49 -0.38 0.72 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.39 1.39 9.06 45.56 0.41 1.81 16 39 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 LS Contribution 342.74 15.07 5.16 5.16 Total: -1.00 -32.98 342.74 -9.45 -42.43 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -5.21 Total: 2.37 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -1.93 Total: -22.36 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 0.12 Total: -33.81 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.26 Total: -4.62 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.30 Total: -5.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.98 -9.45 -42.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181580682.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.075 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.28 seconds