Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09008 * 109.47017 * 55.00082 * 5 4 2 7 7 O 1.42903 * 109.47386 * 295.00486 * 5 4 2 8 8 C 1.50698 * 109.47721 * 175.00208 * 5 4 2 9 9 C 1.38247 * 119.97578 * 84.71943 * 8 5 4 10 10 C 1.38193 * 120.02783 * 179.73229 * 9 8 5 11 11 C 1.38465 * 119.97231 * 0.52599 * 10 9 8 12 12 F 1.35096 * 120.02531 * 179.72432 * 11 10 9 13 13 C 1.38459 * 119.94978 * 359.75281 * 11 10 9 14 14 C 1.38200 * 119.97101 * 359.97438 * 13 11 10 15 15 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 16 16 C 1.34777 * 119.99688 * 274.99602 * 15 2 1 17 17 O 1.21692 * 120.00060 * 0.02562 * 16 15 2 18 18 C 1.46372 * 119.99965 * 179.97438 * 16 15 2 19 19 H 1.08004 * 120.00027 * 0.02562 * 18 16 15 20 20 C 1.40047 * 120.00294 * 180.02562 * 18 16 15 21 21 N 1.30672 * 119.99818 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00361 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46892 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46847 * 120.00011 * 22 20 18 25 25 H 1.48498 * 109.47086 * 240.00418 * 22 20 18 26 26 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 27 27 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 0.96705 * 113.99520 * 300.00083 * 7 5 4 32 32 H 1.08005 * 119.98262 * 359.97438 * 9 8 5 33 33 H 1.07997 * 120.01856 * 180.26119 * 10 9 8 34 34 H 1.07996 * 120.01332 * 179.97438 * 13 11 10 35 35 H 1.08003 * 119.98686 * 179.97438 * 14 13 11 36 36 H 0.96993 * 119.99992 * 94.99462 * 15 2 1 37 37 H 0.96996 * 120.00309 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.9954 -0.9924 -0.3869 7 8 3.9385 0.7549 -1.4880 8 6 4.0773 -1.4259 -2.4748 9 6 4.1115 -0.8745 -3.7421 10 6 4.5865 -1.6167 -4.8067 11 6 5.0181 -2.9169 -4.6055 12 9 5.4774 -3.6453 -5.6464 13 6 4.9780 -3.4701 -3.3369 14 6 4.5079 -2.7239 -2.2729 15 7 2.0184 -0.6907 1.1962 16 6 2.1471 -0.0184 2.3571 17 8 1.8573 1.1622 2.4119 18 6 2.6345 -0.7086 3.5524 19 1 2.8913 -1.7565 3.5039 20 6 2.7678 -0.0102 4.7589 21 7 2.4566 1.2576 4.8178 22 14 3.3905 -0.8908 6.2841 23 1 3.6716 -2.3114 5.9553 24 1 4.6364 -0.2372 6.7590 25 1 2.3589 -0.8238 7.3502 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 3.5895 1.1582 -2.2947 32 1 3.7705 0.1382 -3.8995 33 1 4.6171 -1.1843 -5.7958 34 1 5.3140 -4.4842 -3.1789 35 1 4.4761 -3.1553 -1.2833 36 1 2.2490 -1.6319 1.1525 37 1 2.5486 1.7413 5.6535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184893516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = -122.567931 kcal Electronic energy + Delta-G solvation = -21496.175690 eV Core-core repulsion = 17959.326047 eV Total energy + Delta-G solvation = -3536.849643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.08633 -39.82792 -37.87478 -36.62274 -34.32503 -32.38386 -31.60114 -31.22710 -29.99734 -27.88057 -26.05349 -24.00734 -23.24268 -21.38182 -20.95399 -19.32572 -18.07252 -17.36388 -16.77907 -16.61292 -15.78723 -15.48290 -15.37758 -14.91531 -14.53272 -14.44250 -13.98312 -13.74441 -13.20976 -13.10198 -12.97038 -12.55200 -12.42927 -12.31202 -11.69361 -11.56656 -11.31577 -11.30242 -11.08643 -10.96578 -10.86423 -10.43439 -10.27451 -10.13865 -9.89280 -9.33573 -8.83345 -8.72400 -7.55435 -7.45309 -6.14655 -4.60168 0.90733 1.00629 3.14676 3.22819 3.26809 3.34274 4.03849 4.12910 4.44591 4.46407 4.53476 4.63360 4.65368 4.85001 5.02290 5.10161 5.22735 5.36277 5.45841 5.64640 5.77384 5.78567 5.87590 5.89225 6.00727 6.02550 6.08025 6.21735 6.26806 6.41653 6.66045 6.76673 6.89077 7.46543 7.71316 7.97209 8.16304 8.37053 9.06490 9.59100 10.64743 10.84611 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.003732 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.015565 B = 7501.833753 C = 8162.140382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.084 0.916 4 C -0.149 4.149 5 C 0.148 3.852 6 H 0.117 0.883 7 O -0.543 6.543 8 C -0.117 4.117 9 C -0.086 4.086 10 C -0.151 4.151 11 C 0.089 3.911 12 F -0.143 7.143 13 C -0.150 4.150 14 C -0.081 4.081 15 N -0.761 5.761 16 C 0.557 3.443 17 O -0.578 6.578 18 C -0.547 4.547 19 H 0.066 0.934 20 C 0.088 3.912 21 N -0.768 5.768 22 Si 0.905 3.095 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.366 0.634 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.376 0.624 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 -7.800 -17.018 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.102 0.898 4 C -0.188 4.188 5 C 0.088 3.912 6 H 0.135 0.865 7 O -0.347 6.347 8 C -0.117 4.117 9 C -0.104 4.104 10 C -0.170 4.170 11 C 0.070 3.930 12 F -0.122 7.122 13 C -0.169 4.169 14 C -0.099 4.099 15 N -0.416 5.416 16 C 0.361 3.639 17 O -0.460 6.460 18 C -0.584 4.584 19 H 0.084 0.916 20 C -0.132 4.132 21 N -0.397 5.397 22 Si 0.730 3.270 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.213 0.787 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.207 0.793 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.614 -6.869 -16.336 17.913 hybrid contribution 0.179 -1.095 -0.077 1.112 sum 2.793 -7.964 -16.413 18.455 Atomic orbital electron populations 1.22187 0.97192 1.00846 1.01495 1.20436 0.92491 0.97969 0.84387 0.89820 1.22580 0.94793 1.02033 0.99372 1.20926 0.93978 0.80931 0.95317 0.86490 1.86785 1.76942 1.24292 1.46700 1.20887 0.99254 0.95559 0.96022 1.20760 0.98350 0.99859 0.91448 1.21087 1.02115 0.93153 1.00619 1.17736 1.00349 0.90539 0.84376 1.91489 1.86648 1.77226 1.56826 1.21156 1.02990 1.01412 0.91347 1.20948 0.96512 0.93324 0.99123 1.46196 1.73236 1.12465 1.09737 1.18170 0.77737 0.86369 0.81631 1.90598 1.54574 1.16410 1.84438 1.20921 1.46958 0.97070 0.93449 0.91567 1.25691 0.93363 0.94437 0.99665 1.70030 1.35406 1.08174 1.26053 0.86362 0.78798 0.80278 0.81564 1.18853 1.20210 1.20245 0.93519 0.93570 0.91835 0.90870 0.91109 0.78746 0.85117 0.84802 0.84672 0.84473 0.79307 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.48 37.16 0.35 -2.34 16 2 C 0.15 2.77 2.53 -67.93 -0.17 2.60 16 3 H 0.08 1.79 7.13 -51.93 -0.37 1.42 16 4 C -0.15 -1.93 4.41 -26.73 -0.12 -2.05 16 5 C 0.15 1.96 3.15 -27.89 -0.09 1.87 16 6 H 0.12 1.80 7.53 -51.92 -0.39 1.41 16 7 O -0.54 -7.89 12.59 -35.23 -0.44 -8.34 16 8 C -0.12 -1.30 5.00 -104.62 -0.52 -1.82 16 9 C -0.09 -0.84 9.32 -39.59 -0.37 -1.21 16 10 C -0.15 -1.45 10.03 -39.51 -0.40 -1.85 16 11 C 0.09 0.95 7.30 -39.42 -0.29 0.66 16 12 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 13 C -0.15 -1.51 10.03 -39.51 -0.40 -1.90 16 14 C -0.08 -0.85 9.68 -39.59 -0.38 -1.23 16 15 N -0.76 -16.18 4.44 -55.21 -0.25 -16.42 16 16 C 0.56 15.54 7.71 -12.99 -0.10 15.44 16 17 O -0.58 -18.52 14.68 5.20 0.08 -18.44 16 18 C -0.55 -15.30 9.54 -35.63 -0.34 -15.64 16 19 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 20 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 21 N -0.77 -23.09 11.83 55.55 0.66 -22.44 16 22 Si 0.91 20.14 29.56 -169.99 -5.02 15.12 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.37 3.67 7.39 45.56 0.34 4.01 16 32 H 0.13 0.97 6.62 -52.48 -0.35 0.62 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 36 H 0.38 6.95 8.58 -40.82 -0.35 6.60 16 37 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 323.66 15.07 4.88 4.88 Total: -1.00 -35.26 323.66 -7.03 -42.29 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -4.05 Total: 10.03 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -2.92 Total: -5.12 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.41 Total: -38.86 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.37 Total: -26.78 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.26 -7.03 -42.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184893516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.280 kcal (2) G-P(sol) polarization free energy of solvation -35.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds