Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09008 * 109.47017 * 55.00082 * 5 4 2 7 7 O 1.42903 * 109.47386 * 295.00486 * 5 4 2 8 8 C 1.50698 * 109.47721 * 175.00208 * 5 4 2 9 9 C 1.38247 * 119.97578 * 84.71943 * 8 5 4 10 10 C 1.38193 * 120.02783 * 179.73229 * 9 8 5 11 11 C 1.38465 * 119.97231 * 0.52599 * 10 9 8 12 12 F 1.35096 * 120.02531 * 179.72432 * 11 10 9 13 13 C 1.38459 * 119.94978 * 359.75281 * 11 10 9 14 14 C 1.38200 * 119.97101 * 359.97438 * 13 11 10 15 15 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 16 16 C 1.34777 * 119.99688 * 274.99602 * 15 2 1 17 17 O 1.21692 * 120.00060 * 0.02562 * 16 15 2 18 18 C 1.46372 * 119.99965 * 179.97438 * 16 15 2 19 19 H 1.08004 * 120.00027 * 0.02562 * 18 16 15 20 20 C 1.40047 * 120.00294 * 180.02562 * 18 16 15 21 21 N 1.30672 * 119.99818 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00361 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46892 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46847 * 120.00011 * 22 20 18 25 25 H 1.48498 * 109.47086 * 240.00418 * 22 20 18 26 26 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 27 27 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 29 29 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 30 30 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 31 31 H 0.96705 * 113.99520 * 300.00083 * 7 5 4 32 32 H 1.08005 * 119.98262 * 359.97438 * 9 8 5 33 33 H 1.07997 * 120.01856 * 180.26119 * 10 9 8 34 34 H 1.07996 * 120.01332 * 179.97438 * 13 11 10 35 35 H 1.08003 * 119.98686 * 179.97438 * 14 13 11 36 36 H 0.96993 * 119.99992 * 94.99462 * 15 2 1 37 37 H 0.96996 * 120.00309 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.9954 -0.9924 -0.3869 7 8 3.9385 0.7549 -1.4880 8 6 4.0773 -1.4259 -2.4748 9 6 4.1115 -0.8745 -3.7421 10 6 4.5865 -1.6167 -4.8067 11 6 5.0181 -2.9169 -4.6055 12 9 5.4774 -3.6453 -5.6464 13 6 4.9780 -3.4701 -3.3369 14 6 4.5079 -2.7239 -2.2729 15 7 2.0184 -0.6907 1.1962 16 6 2.1471 -0.0184 2.3571 17 8 1.8573 1.1622 2.4119 18 6 2.6345 -0.7086 3.5524 19 1 2.8913 -1.7565 3.5039 20 6 2.7678 -0.0102 4.7589 21 7 2.4566 1.2576 4.8178 22 14 3.3905 -0.8908 6.2841 23 1 3.6716 -2.3114 5.9553 24 1 4.6364 -0.2372 6.7590 25 1 2.3589 -0.8238 7.3502 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7515 -1.7715 -1.2057 30 1 1.6053 -0.2617 -2.1370 31 1 3.5895 1.1582 -2.2947 32 1 3.7705 0.1382 -3.8995 33 1 4.6171 -1.1843 -5.7958 34 1 5.3140 -4.4842 -3.1789 35 1 4.4761 -3.1553 -1.2833 36 1 2.2490 -1.6319 1.1525 37 1 2.5486 1.7413 5.6535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184893516.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = -148.434421 kcal Electronic energy + Delta-G solvation = -21497.297345 eV Core-core repulsion = 17959.326047 eV Total energy + Delta-G solvation = -3537.971298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.90209 -40.75928 -39.51007 -37.94694 -35.98529 -34.50161 -32.64899 -32.04830 -31.59423 -28.99638 -28.13732 -25.06030 -24.01010 -22.82955 -22.08666 -21.10095 -19.27200 -18.82229 -17.86886 -17.59103 -17.36451 -16.60564 -16.47328 -16.38805 -15.91686 -15.52011 -15.37342 -14.72562 -14.48518 -14.35273 -14.19294 -14.00295 -13.75897 -13.48300 -13.29006 -12.96351 -12.74796 -12.69560 -12.59490 -12.47707 -12.19660 -11.96172 -11.89999 -11.63001 -10.99186 -10.91444 -10.07440 -9.75989 -9.59468 -9.32513 -8.24269 -6.79974 0.10185 0.26816 1.40972 1.41348 1.58610 2.26728 2.53776 2.55916 3.20815 3.26461 3.48161 3.59094 3.70021 3.76902 3.94616 4.08777 4.17395 4.26103 4.34178 4.44559 4.61967 4.68104 4.85856 4.90947 4.93998 4.98700 5.08182 5.14655 5.25042 5.28182 5.35950 5.42741 5.55728 5.89842 5.95047 6.31886 6.42049 6.86259 6.92016 7.65873 8.57725 8.75392 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.003732 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.015565 B = 7501.833753 C = 8162.140382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 H 0.044 0.956 4 C -0.133 4.133 5 C 0.153 3.847 6 H 0.089 0.911 7 O -0.570 6.570 8 C -0.124 4.124 9 C -0.085 4.085 10 C -0.151 4.151 11 C 0.075 3.925 12 F -0.149 7.149 13 C -0.153 4.153 14 C -0.088 4.088 15 N -0.747 5.747 16 C 0.542 3.458 17 O -0.631 6.631 18 C -0.575 4.575 19 H 0.086 0.914 20 C 0.028 3.972 21 N -0.824 5.824 22 Si 0.995 3.005 23 H -0.246 1.246 24 H -0.271 1.271 25 H -0.270 1.270 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.016 0.984 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.384 0.616 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.391 0.609 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 -9.790 -18.138 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.062 0.938 4 C -0.171 4.171 5 C 0.094 3.906 6 H 0.107 0.893 7 O -0.378 6.378 8 C -0.125 4.125 9 C -0.103 4.103 10 C -0.169 4.169 11 C 0.056 3.944 12 F -0.128 7.128 13 C -0.172 4.172 14 C -0.106 4.106 15 N -0.401 5.401 16 C 0.346 3.654 17 O -0.518 6.518 18 C -0.612 4.612 19 H 0.104 0.896 20 C -0.187 4.187 21 N -0.454 5.454 22 Si 0.815 3.185 23 H -0.169 1.169 24 H -0.196 1.196 25 H -0.195 1.195 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.035 0.965 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.234 0.766 32 H 0.171 0.829 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.225 0.775 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.909 -8.908 -17.523 19.871 hybrid contribution 0.082 -0.457 0.158 0.491 sum 2.991 -9.365 -17.365 19.955 Atomic orbital electron populations 1.22103 0.96170 1.01885 1.00850 1.20585 0.93283 0.96403 0.85263 0.93787 1.22457 0.94645 1.02614 0.97391 1.20715 0.93939 0.80728 0.95244 0.89325 1.86739 1.77517 1.25222 1.48311 1.20687 1.00438 0.95613 0.95729 1.21003 0.97729 1.00822 0.90718 1.21332 1.01280 0.92717 1.01587 1.17996 1.00755 0.91120 0.84485 1.91476 1.86786 1.77432 1.57062 1.21326 1.02661 1.02149 0.91028 1.21092 0.96514 0.93290 0.99724 1.45830 1.71985 1.13012 1.09258 1.18511 0.77407 0.85968 0.83560 1.90552 1.56796 1.18681 1.85765 1.21489 1.47283 0.98195 0.94248 0.89556 1.26945 0.92889 0.95107 1.03736 1.70206 1.37070 1.10571 1.27521 0.85016 0.78072 0.79437 0.76019 1.16882 1.19609 1.19494 0.90161 0.91576 0.96474 0.88921 0.88007 0.76607 0.82854 0.82791 0.83189 0.83707 0.77501 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.48 71.98 0.68 -4.38 16 2 C 0.15 5.41 2.53 44.99 0.11 5.52 16 3 H 0.04 1.95 7.13 -2.39 -0.02 1.94 16 4 C -0.13 -3.15 4.41 30.59 0.14 -3.01 16 5 C 0.15 3.88 3.15 29.85 0.09 3.98 16 6 H 0.09 2.73 7.53 -2.38 -0.02 2.72 16 7 O -0.57 -16.30 12.59 -148.98 -1.88 -18.18 16 8 C -0.12 -2.51 5.00 -19.86 -0.10 -2.61 16 9 C -0.08 -1.41 9.32 22.26 0.21 -1.21 16 10 C -0.15 -2.49 10.03 22.31 0.22 -2.27 16 11 C 0.08 1.45 7.30 22.38 0.16 1.61 16 12 F -0.15 -3.07 17.27 44.97 0.78 -2.30 16 13 C -0.15 -2.77 10.03 22.31 0.22 -2.55 16 14 C -0.09 -1.69 9.68 22.26 0.22 -1.47 16 15 N -0.75 -32.16 4.44 -446.81 -1.99 -34.15 16 16 C 0.54 31.28 7.71 86.36 0.67 31.95 16 17 O -0.63 -42.58 14.68 -4.32 -0.06 -42.64 16 18 C -0.58 -32.65 9.54 24.83 0.24 -32.41 16 19 H 0.09 4.37 7.85 -2.91 -0.02 4.34 16 20 C 0.03 1.57 5.50 85.30 0.47 2.04 16 21 N -0.82 -51.25 11.83 21.84 0.26 -51.00 16 22 Si 0.99 41.40 29.56 68.60 2.03 43.43 16 23 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 25 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 26 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.38 7.14 7.39 -74.05 -0.55 6.59 16 32 H 0.15 1.76 6.62 -2.91 -0.02 1.74 16 33 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 36 H 0.39 14.30 8.58 -92.71 -0.80 13.51 16 37 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 Total: -1.00 -80.75 323.66 2.23 -78.51 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.24 Total: 31.13 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 3.33 Total: -4.82 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -1.73 Total: -85.14 kcal Atomic # 8 Polarization: -58.88 SS G_CDS: -1.94 Total: -60.82 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.30 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -80.75 2.23 -78.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184893516.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.921 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds