Wall clock time and date at job start Tue Mar 31 2020 06:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 H 1.08996 * 109.46875 * 304.99826 * 5 4 2 7 7 O 1.42901 * 109.47207 * 64.99805 * 5 4 2 8 8 C 1.50702 * 109.46806 * 184.99728 * 5 4 2 9 9 C 1.38247 * 119.97333 * 279.72385 * 8 5 4 10 10 C 1.38202 * 120.02050 * 179.76934 * 9 8 5 11 11 C 1.38456 * 119.97553 * 0.50884 * 10 9 8 12 12 F 1.35105 * 120.02592 * 179.76847 * 11 10 9 13 13 C 1.38451 * 119.94912 * 359.74618 * 11 10 9 14 14 C 1.38199 * 119.97644 * 359.97438 * 13 11 10 15 15 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 16 16 C 1.34784 * 120.00075 * 85.00024 * 15 2 1 17 17 O 1.21686 * 119.99536 * 0.02562 * 16 15 2 18 18 C 1.46370 * 120.00233 * 180.02562 * 16 15 2 19 19 H 1.07991 * 120.00335 * 0.02562 * 18 16 15 20 20 C 1.40051 * 119.99693 * 180.02562 * 18 16 15 21 21 N 1.30664 * 120.00240 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99781 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47270 * 59.99844 * 22 20 18 24 24 H 1.48496 * 109.47045 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46917 * 299.99549 * 22 20 18 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 31 31 H 0.96703 * 113.99612 * 59.99833 * 7 5 4 32 32 H 1.08000 * 119.98952 * 0.02562 * 9 8 5 33 33 H 1.08001 * 120.00635 * 180.25723 * 10 9 8 34 34 H 1.08001 * 120.01388 * 179.97438 * 13 11 10 35 35 H 1.08008 * 119.98963 * 180.02562 * 14 13 11 36 36 H 0.96996 * 120.00792 * 265.00493 * 15 2 1 37 37 H 0.97005 * 120.00326 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 1 3.9954 -0.9923 0.3868 7 8 3.9386 0.7548 1.4880 8 6 4.0773 -1.4260 2.4748 9 6 4.0262 -0.9087 3.7558 10 6 4.4915 -1.6549 4.8219 11 6 5.0186 -2.9168 4.6053 12 9 5.4781 -3.6453 5.6462 13 6 5.0741 -3.4316 3.3213 14 6 4.6030 -2.6859 2.2574 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3572 17 8 1.8581 1.1624 -2.4117 18 6 2.6344 -0.7086 -3.5524 19 1 2.8905 -1.7566 -3.5041 20 6 2.7687 -0.0098 -4.7587 21 7 2.4584 1.2582 -4.8172 22 14 3.3900 -0.8907 -6.2842 23 1 2.4725 -2.0096 -6.6179 24 1 3.4402 0.0635 -7.4209 25 1 4.7508 -1.4265 -6.0267 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6055 -0.2618 2.1370 30 1 1.7516 -1.7716 1.2057 31 1 3.5896 1.1581 2.2947 32 1 3.6187 0.0773 3.9240 33 1 4.4477 -1.2523 5.8231 34 1 5.4855 -4.4156 3.1511 35 1 4.6458 -3.0875 1.2557 36 1 2.2490 -1.6318 -1.1526 37 1 2.5510 1.7421 -5.6528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184893532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:10 Heat of formation + Delta-G solvation = -122.729698 kcal Electronic energy + Delta-G solvation = -21494.840191 eV Core-core repulsion = 17957.983534 eV Total energy + Delta-G solvation = -3536.856657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.08665 -39.82410 -37.87446 -36.61914 -34.31851 -32.38140 -31.58672 -31.25033 -29.99402 -27.87457 -26.05086 -24.01563 -23.24598 -21.38467 -20.94264 -19.32154 -18.06161 -17.36414 -16.77930 -16.60893 -15.78809 -15.47391 -15.37538 -14.91464 -14.53357 -14.42989 -13.99397 -13.74501 -13.20892 -13.11023 -12.98107 -12.55243 -12.42720 -12.29980 -11.69082 -11.56298 -11.31948 -11.29967 -11.09173 -10.93500 -10.87608 -10.42196 -10.28113 -10.17548 -9.88102 -9.33668 -8.81853 -8.73335 -7.55633 -7.45143 -6.14167 -4.60077 0.90452 1.00495 3.17551 3.22529 3.24123 3.34085 4.03676 4.13095 4.44462 4.47033 4.54453 4.63605 4.65281 4.85421 5.02101 5.08472 5.23497 5.36242 5.46098 5.64704 5.77286 5.78791 5.88061 5.88975 6.00618 6.02449 6.08056 6.22010 6.26823 6.41982 6.65911 6.76837 6.89202 7.46434 7.71815 7.97304 8.16453 8.36779 9.06419 9.59335 10.65131 10.84873 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.003736 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.984598 B = 7492.522252 C = 8171.299340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.084 0.916 4 C -0.150 4.150 5 C 0.148 3.852 6 H 0.117 0.883 7 O -0.543 6.543 8 C -0.117 4.117 9 C -0.086 4.086 10 C -0.151 4.151 11 C 0.090 3.910 12 F -0.143 7.143 13 C -0.151 4.151 14 C -0.080 4.080 15 N -0.761 5.761 16 C 0.558 3.442 17 O -0.578 6.578 18 C -0.548 4.548 19 H 0.065 0.935 20 C 0.088 3.912 21 N -0.768 5.768 22 Si 0.906 3.094 23 H -0.269 1.269 24 H -0.281 1.281 25 H -0.268 1.268 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.366 0.634 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.376 0.624 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -7.784 17.005 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.102 0.898 4 C -0.188 4.188 5 C 0.089 3.911 6 H 0.135 0.865 7 O -0.347 6.347 8 C -0.118 4.118 9 C -0.104 4.104 10 C -0.170 4.170 11 C 0.070 3.930 12 F -0.122 7.122 13 C -0.169 4.169 14 C -0.098 4.098 15 N -0.416 5.416 16 C 0.361 3.639 17 O -0.460 6.460 18 C -0.585 4.585 19 H 0.083 0.917 20 C -0.131 4.131 21 N -0.397 5.397 22 Si 0.730 3.270 23 H -0.194 1.194 24 H -0.206 1.206 25 H -0.193 1.193 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.212 0.788 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.155 0.845 36 H 0.207 0.793 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.638 -6.844 16.319 17.891 hybrid contribution 0.178 -1.120 0.085 1.137 sum 2.816 -7.964 16.404 18.451 Atomic orbital electron populations 1.22188 0.97198 1.00841 1.01490 1.20434 0.92485 0.97967 0.84389 0.89820 1.22583 0.94824 1.02025 0.99365 1.20928 0.93986 0.80944 0.95286 0.86542 1.86785 1.76968 1.24261 1.46679 1.20884 0.99054 0.95873 0.95943 1.20764 0.98524 0.99696 0.91399 1.21087 1.01718 0.93624 1.00580 1.17734 1.00005 0.90981 0.84231 1.91492 1.86738 1.77068 1.56888 1.21159 1.03059 1.01560 0.91156 1.20967 0.96172 0.93475 0.99209 1.46195 1.73245 1.12467 1.09735 1.18150 0.77732 0.86364 0.81614 1.90596 1.54609 1.16389 1.84438 1.20851 1.47134 0.97006 0.93509 0.91658 1.25683 0.93362 0.94437 0.99634 1.70006 1.35261 1.08155 1.26261 0.86475 0.79856 0.79716 0.80913 1.19379 1.20614 1.19333 0.91831 0.93528 0.93574 0.91118 0.90875 0.78756 0.85135 0.84800 0.84669 0.84465 0.79310 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.48 37.16 0.35 -2.35 16 2 C 0.15 2.77 2.53 -67.93 -0.17 2.60 16 3 H 0.08 1.79 7.13 -51.93 -0.37 1.42 16 4 C -0.15 -1.93 4.41 -26.73 -0.12 -2.05 16 5 C 0.15 1.96 3.15 -27.88 -0.09 1.87 16 6 H 0.12 1.79 7.48 -51.93 -0.39 1.40 16 7 O -0.54 -7.92 12.64 -35.23 -0.45 -8.36 16 8 C -0.12 -1.30 4.97 -104.62 -0.52 -1.82 16 9 C -0.09 -0.83 9.32 -39.59 -0.37 -1.20 16 10 C -0.15 -1.45 10.03 -39.51 -0.40 -1.85 16 11 C 0.09 0.95 7.30 -39.42 -0.29 0.67 16 12 F -0.14 -1.60 17.27 2.25 0.04 -1.56 16 13 C -0.15 -1.51 10.03 -39.52 -0.40 -1.91 16 14 C -0.08 -0.84 9.67 -39.59 -0.38 -1.23 16 15 N -0.76 -16.20 4.44 -55.22 -0.25 -16.44 16 16 C 0.56 15.56 7.71 -12.99 -0.10 15.46 16 17 O -0.58 -18.53 14.68 5.20 0.08 -18.45 16 18 C -0.55 -15.34 9.54 -35.63 -0.34 -15.68 16 19 H 0.07 1.66 7.85 -52.49 -0.41 1.25 16 20 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 21 N -0.77 -23.12 11.83 55.55 0.66 -22.46 16 22 Si 0.91 20.15 29.56 -169.99 -5.02 15.13 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.37 3.69 7.49 45.56 0.34 4.03 16 32 H 0.13 0.96 6.77 -52.49 -0.36 0.60 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.27 8.04 -52.48 -0.42 0.85 16 36 H 0.38 6.96 8.58 -40.82 -0.35 6.61 16 37 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -35.23 323.84 -7.03 -42.25 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -4.05 Total: 10.12 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.91 Total: -5.10 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.41 Total: -38.91 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.37 Total: -26.81 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.23 -7.03 -42.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184893532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.476 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds