Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.53005 * 109.46991 * 184.99870 * 4 2 1 6 6 H 1.08996 * 109.46875 * 304.99826 * 5 4 2 7 7 O 1.42901 * 109.47207 * 64.99805 * 5 4 2 8 8 C 1.50702 * 109.46806 * 184.99728 * 5 4 2 9 9 C 1.38247 * 119.97333 * 279.72385 * 8 5 4 10 10 C 1.38202 * 120.02050 * 179.76934 * 9 8 5 11 11 C 1.38456 * 119.97553 * 0.50884 * 10 9 8 12 12 F 1.35105 * 120.02592 * 179.76847 * 11 10 9 13 13 C 1.38451 * 119.94912 * 359.74618 * 11 10 9 14 14 C 1.38199 * 119.97644 * 359.97438 * 13 11 10 15 15 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 16 16 C 1.34784 * 120.00075 * 85.00024 * 15 2 1 17 17 O 1.21686 * 119.99536 * 0.02562 * 16 15 2 18 18 C 1.46370 * 120.00233 * 180.02562 * 16 15 2 19 19 H 1.07991 * 120.00335 * 0.02562 * 18 16 15 20 20 C 1.40051 * 119.99693 * 180.02562 * 18 16 15 21 21 N 1.30664 * 120.00240 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99781 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47270 * 59.99844 * 22 20 18 24 24 H 1.48496 * 109.47045 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46917 * 299.99549 * 22 20 18 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 30 30 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 31 31 H 0.96703 * 113.99612 * 59.99833 * 7 5 4 32 32 H 1.08000 * 119.98952 * 0.02562 * 9 8 5 33 33 H 1.08001 * 120.00635 * 180.25723 * 10 9 8 34 34 H 1.08001 * 120.01388 * 179.97438 * 13 11 10 35 35 H 1.08008 * 119.98963 * 180.02562 * 14 13 11 36 36 H 0.96996 * 120.00792 * 265.00493 * 15 2 1 37 37 H 0.97005 * 120.00326 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6134 1.3137 6 1 3.9954 -0.9923 0.3868 7 8 3.9386 0.7548 1.4880 8 6 4.0773 -1.4260 2.4748 9 6 4.0262 -0.9087 3.7558 10 6 4.4915 -1.6549 4.8219 11 6 5.0186 -2.9168 4.6053 12 9 5.4781 -3.6453 5.6462 13 6 5.0741 -3.4316 3.3213 14 6 4.6030 -2.6859 2.2574 15 7 2.0183 -0.6907 -1.1961 16 6 2.1471 -0.0184 -2.3572 17 8 1.8581 1.1624 -2.4117 18 6 2.6344 -0.7086 -3.5524 19 1 2.8905 -1.7566 -3.5041 20 6 2.7687 -0.0098 -4.7587 21 7 2.4584 1.2582 -4.8172 22 14 3.3900 -0.8907 -6.2842 23 1 2.4725 -2.0096 -6.6179 24 1 3.4402 0.0635 -7.4209 25 1 4.7508 -1.4265 -6.0267 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6055 -0.2618 2.1370 30 1 1.7516 -1.7716 1.2057 31 1 3.5896 1.1581 2.2947 32 1 3.6187 0.0773 3.9240 33 1 4.4477 -1.2523 5.8231 34 1 5.4855 -4.4156 3.1511 35 1 4.6458 -3.0875 1.2557 36 1 2.2490 -1.6318 -1.1526 37 1 2.5510 1.7421 -5.6528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184893532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = -148.604665 kcal Electronic energy + Delta-G solvation = -21495.962214 eV Core-core repulsion = 17957.983534 eV Total energy + Delta-G solvation = -3537.978680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.90193 -40.75569 -39.51028 -37.94706 -35.98077 -34.50123 -32.63736 -32.06700 -31.59298 -28.99147 -28.13527 -25.06333 -24.02189 -22.82454 -22.08269 -21.09823 -19.26728 -18.81038 -17.87383 -17.58960 -17.35748 -16.60615 -16.47215 -16.39201 -15.91756 -15.52124 -15.36684 -14.72146 -14.48002 -14.34416 -14.20318 -14.01242 -13.76831 -13.47751 -13.29987 -12.95883 -12.72238 -12.67108 -12.58391 -12.48775 -12.20631 -12.03233 -11.90024 -11.62640 -10.98073 -10.88463 -10.07522 -9.76514 -9.60063 -9.32770 -8.23906 -6.80061 0.09934 0.26687 1.40869 1.44610 1.55634 2.26932 2.53945 2.55747 3.20946 3.26382 3.47987 3.60833 3.70216 3.76187 3.94495 4.08559 4.17034 4.26094 4.34063 4.44771 4.61897 4.68187 4.85872 4.90996 4.94351 4.98510 5.07970 5.14478 5.24790 5.28318 5.35436 5.42708 5.55897 5.89717 5.94834 6.31603 6.42179 6.86628 6.91825 7.65851 8.57745 8.75376 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.003736 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.984598 B = 7492.522252 C = 8171.299340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 H 0.044 0.956 4 C -0.133 4.133 5 C 0.153 3.847 6 H 0.088 0.912 7 O -0.570 6.570 8 C -0.124 4.124 9 C -0.084 4.084 10 C -0.151 4.151 11 C 0.076 3.924 12 F -0.149 7.149 13 C -0.154 4.154 14 C -0.088 4.088 15 N -0.747 5.747 16 C 0.542 3.458 17 O -0.631 6.631 18 C -0.577 4.577 19 H 0.086 0.914 20 C 0.028 3.972 21 N -0.824 5.824 22 Si 0.995 3.005 23 H -0.254 1.254 24 H -0.277 1.277 25 H -0.255 1.255 26 H 0.016 0.984 27 H 0.080 0.920 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.384 0.616 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.391 0.609 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.818 -9.745 18.154 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.045 3.955 3 H 0.062 0.938 4 C -0.171 4.171 5 C 0.094 3.906 6 H 0.106 0.894 7 O -0.378 6.378 8 C -0.125 4.125 9 C -0.102 4.102 10 C -0.169 4.169 11 C 0.057 3.943 12 F -0.128 7.128 13 C -0.172 4.172 14 C -0.106 4.106 15 N -0.401 5.401 16 C 0.346 3.654 17 O -0.518 6.518 18 C -0.614 4.614 19 H 0.104 0.896 20 C -0.186 4.186 21 N -0.454 5.454 22 Si 0.814 3.186 23 H -0.178 1.178 24 H -0.202 1.202 25 H -0.179 1.179 26 H 0.035 0.965 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.234 0.766 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.162 0.838 36 H 0.225 0.775 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.904 -8.856 17.534 19.857 hybrid contribution 0.090 -0.494 -0.157 0.526 sum 2.994 -9.350 17.377 19.959 Atomic orbital electron populations 1.22104 0.96169 1.01876 1.00860 1.20586 0.93283 0.96404 0.85265 0.93780 1.22460 0.94665 1.02580 0.97415 1.20718 0.93955 0.80732 0.95218 0.89390 1.86739 1.77548 1.25205 1.48292 1.20682 1.00204 0.95919 0.95685 1.21013 0.97957 1.00594 0.90611 1.21336 1.00845 0.93115 1.01611 1.17994 1.00434 0.91560 0.84318 1.91479 1.86878 1.77280 1.57114 1.21322 1.02813 1.02216 0.90865 1.21105 0.96233 0.93498 0.99789 1.45831 1.71999 1.13010 1.09263 1.18495 0.77404 0.85966 0.83546 1.90550 1.56826 1.18657 1.85765 1.21438 1.47452 0.98195 0.94309 0.89550 1.26942 0.92867 0.95100 1.03718 1.70192 1.36968 1.10557 1.27649 0.85122 0.79706 0.78366 0.75390 1.17814 1.20155 1.17894 0.96473 0.90140 0.91595 0.87938 0.88978 0.76614 0.82764 0.82744 0.83226 0.83813 0.77516 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.48 71.98 0.68 -4.38 16 2 C 0.15 5.41 2.53 44.99 0.11 5.53 16 3 H 0.04 1.96 7.13 -2.39 -0.02 1.94 16 4 C -0.13 -3.15 4.41 30.60 0.13 -3.02 16 5 C 0.15 3.89 3.15 29.85 0.09 3.98 16 6 H 0.09 2.72 7.48 -2.39 -0.02 2.70 16 7 O -0.57 -16.35 12.64 -148.98 -1.88 -18.23 16 8 C -0.12 -2.52 4.97 -19.86 -0.10 -2.62 16 9 C -0.08 -1.38 9.32 22.26 0.21 -1.17 16 10 C -0.15 -2.47 10.03 22.31 0.22 -2.24 16 11 C 0.08 1.46 7.30 22.37 0.16 1.62 16 12 F -0.15 -3.07 17.27 44.97 0.78 -2.29 16 13 C -0.15 -2.80 10.03 22.31 0.22 -2.57 16 14 C -0.09 -1.70 9.67 22.26 0.22 -1.49 16 15 N -0.75 -32.23 4.44 -446.82 -1.99 -34.22 16 16 C 0.54 31.34 7.71 86.36 0.67 32.01 16 17 O -0.63 -42.61 14.68 -4.30 -0.06 -42.68 16 18 C -0.58 -32.79 9.54 24.83 0.24 -32.56 16 19 H 0.09 4.36 7.85 -2.92 -0.02 4.33 16 20 C 0.03 1.61 5.50 85.31 0.47 2.07 16 21 N -0.82 -51.33 11.83 21.84 0.26 -51.07 16 22 Si 0.99 41.38 29.56 68.60 2.03 43.40 16 23 H -0.25 -9.89 7.11 99.48 0.71 -9.19 16 24 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 29 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.38 7.16 7.49 -74.06 -0.55 6.61 16 32 H 0.15 1.71 6.77 -2.91 -0.02 1.69 16 33 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.14 2.48 8.04 -2.91 -0.02 2.46 16 36 H 0.39 14.35 8.58 -92.71 -0.80 13.55 16 37 H 0.27 15.45 8.29 -92.70 -0.77 14.68 16 Total: -1.00 -80.78 323.84 2.22 -78.56 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: -0.24 Total: 31.37 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 3.33 Total: -4.85 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -1.73 Total: -85.28 kcal Atomic # 8 Polarization: -58.96 SS G_CDS: -1.95 Total: -60.91 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.78 Total: -2.29 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -80.78 2.22 -78.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184893532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.044 kcal (2) G-P(sol) polarization free energy of solvation -80.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds