Wall clock time and date at job start Tue Mar 31 2020 06:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38725 * 120.03144 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.97069 * 179.97438 * 4 3 2 6 6 C 1.38474 * 120.02959 * 359.97244 * 5 4 3 7 7 F 1.35093 * 119.97291 * 180.02562 * 6 5 4 8 8 C 1.38434 * 120.05985 * 0.02669 * 6 5 4 9 9 C 1.38169 * 120.03134 * 359.74311 * 8 6 5 10 10 C 1.50706 * 120.01835 * 180.25590 * 9 8 6 11 11 C 1.50705 * 109.46833 * 265.22924 * 10 9 8 12 12 O 1.21281 * 120.00114 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99563 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99650 * 180.02562 * 13 11 10 15 15 H 1.08993 * 109.47264 * 324.99964 * 14 13 11 16 16 C 1.52998 * 109.46836 * 85.00227 * 14 13 11 17 17 C 1.50705 * 109.46713 * 205.00051 * 14 13 11 18 18 H 1.07997 * 119.99875 * 359.97438 * 17 14 13 19 19 C 1.37880 * 119.99387 * 180.02562 * 17 14 13 20 20 N 1.31511 * 120.00187 * 359.97438 * 19 17 14 21 21 Si 1.86795 * 119.99391 * 179.97438 * 19 17 14 22 22 H 1.48497 * 109.47750 * 59.99970 * 21 19 17 23 23 H 1.48502 * 109.47018 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47467 * 299.99741 * 21 19 17 25 25 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 26 26 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 27 27 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 28 28 H 1.07999 * 120.01566 * 359.97438 * 4 3 2 29 29 H 1.07997 * 119.98618 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.98831 * 179.97438 * 8 6 5 31 31 H 1.08997 * 109.46654 * 25.22980 * 10 9 8 32 32 H 1.09002 * 109.46776 * 145.23276 * 10 9 8 33 33 H 0.97001 * 120.00144 * 0.02562 * 13 11 10 34 34 H 1.09001 * 109.47690 * 59.99930 * 16 14 13 35 35 H 1.09002 * 109.46744 * 179.97438 * 16 14 13 36 36 H 1.09000 * 109.47413 * 299.99609 * 16 14 13 37 37 H 0.97001 * 119.99351 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9197 3.6052 0.0011 6 6 3.3026 3.6769 0.0016 7 9 3.9160 4.8806 0.0027 8 6 4.0572 2.5163 0.0011 9 6 3.4312 1.2846 0.0054 10 6 4.2529 0.0212 0.0107 11 6 4.4286 -0.4696 -1.4033 12 8 3.9347 0.1456 -2.3246 13 7 5.1345 -1.5922 -1.6441 14 6 5.3058 -2.0690 -3.0187 15 1 4.4037 -1.8561 -3.5922 16 6 6.4981 -1.3569 -3.6607 17 6 5.5548 -3.5553 -3.0074 18 1 5.5831 -4.0909 -2.0701 19 6 5.7475 -4.2309 -4.1938 20 7 5.7135 -3.5785 -5.3351 21 14 6.0569 -6.0730 -4.1797 22 1 4.8999 -6.7647 -3.5568 23 1 6.2316 -6.5563 -5.5730 24 1 7.2860 -6.3627 -3.3982 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2128 2.3195 0.0005 29 1 1.3323 4.5114 0.0019 30 1 5.1356 2.5736 0.0012 31 1 5.2300 0.2253 0.4485 32 1 3.7429 -0.7414 0.5993 33 1 5.5292 -2.0844 -0.9073 34 1 7.4003 -1.5698 -3.0872 35 1 6.6258 -1.7121 -4.6833 36 1 6.3180 -0.2820 -3.6688 37 1 5.8495 -4.0539 -6.1697 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185736325.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:03 Heat of formation + Delta-G solvation = -123.152832 kcal Electronic energy + Delta-G solvation = -21710.377703 eV Core-core repulsion = 18173.502698 eV Total energy + Delta-G solvation = -3536.875006 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 4.82 seconds Orbital eigenvalues (eV) -49.81356 -41.41786 -40.19447 -38.19209 -36.66918 -34.32417 -33.89352 -31.17163 -30.71450 -28.69777 -27.86912 -27.31425 -23.85176 -23.25016 -22.41505 -21.08745 -19.17951 -18.79275 -18.09829 -17.97332 -17.49333 -17.06614 -16.69595 -16.34083 -15.97930 -15.87667 -15.63765 -15.38243 -14.73357 -14.49479 -14.20898 -14.07021 -13.74840 -13.66225 -13.20152 -13.00103 -12.92857 -12.78449 -12.72569 -12.54412 -12.24597 -12.14343 -11.85083 -11.78198 -11.10009 -10.76861 -10.56120 -10.00330 -9.69571 -9.03959 -8.15745 -6.33525 0.12689 0.22327 1.45913 1.48219 1.56013 1.90918 2.31143 2.36641 2.48043 2.87883 3.14532 3.28650 3.58454 3.73153 4.03633 4.13765 4.22865 4.36986 4.41098 4.43618 4.48569 4.72536 4.73600 4.76436 4.89174 4.94592 5.10132 5.11499 5.11918 5.30682 5.45763 5.63936 5.71874 5.73262 5.94129 6.12091 6.38780 6.74790 7.03116 7.34652 7.63434 8.90404 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.024761 B = 0.004010 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.538429 B = 6980.361780 C = 7656.656312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.121 3.879 4 C -0.181 4.181 5 C -0.111 4.111 6 C 0.040 3.960 7 F -0.148 7.148 8 C -0.112 4.112 9 C -0.085 4.085 10 C -0.085 4.085 11 C 0.503 3.497 12 O -0.597 6.597 13 N -0.707 5.707 14 C 0.272 3.728 15 H -0.006 1.006 16 C -0.133 4.133 17 C -0.547 4.547 18 H 0.074 0.926 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.973 3.027 22 H -0.270 1.270 23 H -0.287 1.287 24 H -0.263 1.263 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.112 0.888 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.406 0.594 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.010 0.990 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 9.322 15.679 19.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.075 3.925 4 C -0.199 4.199 5 C -0.129 4.129 6 C 0.021 3.979 7 F -0.127 7.127 8 C -0.130 4.130 9 C -0.087 4.087 10 C -0.124 4.124 11 C 0.290 3.710 12 O -0.478 6.478 13 N -0.357 5.357 14 C 0.168 3.832 15 H 0.012 0.988 16 C -0.191 4.191 17 C -0.585 4.585 18 H 0.092 0.908 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.798 3.202 22 H -0.195 1.195 23 H -0.213 1.213 24 H -0.188 1.188 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.130 0.870 28 H 0.183 0.817 29 H 0.181 0.819 30 H 0.167 0.833 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.241 0.759 34 H 0.060 0.940 35 H 0.083 0.917 36 H 0.029 0.971 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.272 9.552 14.824 19.479 hybrid contribution 0.274 -0.660 -0.387 0.813 sum -7.998 8.892 14.437 18.747 Atomic orbital electron populations 1.23376 0.76354 1.05525 1.02480 1.86095 1.23591 1.26557 1.88217 1.19074 0.91942 0.85398 0.96078 1.21336 1.01667 0.90491 1.06437 1.21186 0.92200 0.99702 0.99862 1.17663 0.91667 0.80218 1.08369 1.91455 1.83560 1.43080 1.94585 1.20984 1.01351 0.90169 1.00534 1.18661 0.91043 0.94540 1.04428 1.20533 1.02843 0.95865 0.93178 1.21149 0.77463 0.80495 0.91850 1.90634 1.50885 1.58170 1.48149 1.46255 1.53155 1.25731 1.10510 1.18291 0.93156 0.93031 0.78728 0.98832 1.21889 0.98639 0.95933 1.02687 1.21537 1.50519 0.92494 0.93927 0.90758 1.25823 0.94433 1.03581 0.94814 1.70060 1.49592 1.37821 0.98282 0.85381 0.79100 0.78656 0.77094 1.19516 1.21262 1.18785 0.90088 0.92352 0.86965 0.81653 0.81906 0.83328 0.85032 0.86062 0.75908 0.93966 0.91664 0.97109 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.33 -9.14 9.63 -92.94 -0.90 -10.03 16 3 C 0.12 3.37 6.66 22.49 0.15 3.52 16 4 C -0.18 -3.99 9.04 22.36 0.20 -3.79 16 5 C -0.11 -2.43 10.02 22.30 0.22 -2.20 16 6 C 0.04 1.05 7.30 22.37 0.16 1.21 16 7 F -0.15 -3.93 17.27 44.97 0.78 -3.15 16 8 C -0.11 -3.06 9.66 22.30 0.22 -2.85 16 9 C -0.09 -2.49 4.39 -19.77 -0.09 -2.58 16 10 C -0.08 -2.38 5.55 29.11 0.16 -2.22 16 11 C 0.50 20.42 7.79 87.66 0.68 21.11 16 12 O -0.60 -30.21 15.70 -3.03 -0.05 -30.25 16 13 N -0.71 -29.69 5.07 -446.09 -2.26 -31.96 16 14 C 0.27 14.38 2.56 44.25 0.11 14.49 16 15 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 16 C -0.13 -6.88 9.26 71.98 0.67 -6.21 16 17 C -0.55 -29.20 8.73 25.60 0.22 -28.98 16 18 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 19 C 0.01 0.72 5.30 84.66 0.45 1.17 16 20 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 21 Si 0.97 42.09 29.54 68.60 2.03 44.11 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 23 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 25 H 0.08 0.96 7.66 -2.39 -0.02 0.94 16 26 H 0.06 0.99 7.66 -2.38 -0.02 0.97 16 27 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.17 2.51 6.30 -2.91 -0.02 2.50 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 31 H 0.13 2.77 8.05 -2.39 -0.02 2.75 16 32 H 0.12 2.99 7.69 -2.39 -0.02 2.97 16 33 H 0.41 14.03 8.54 -92.71 -0.79 13.23 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 36 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.87 322.03 4.42 -68.45 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.31 Total: 21.95 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 4.28 Total: -5.93 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -2.02 Total: -85.14 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.94 Total: -40.29 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.78 Total: -3.15 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Total: -72.87 4.42 -68.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185736325.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.706 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.82 seconds