Wall clock time and date at job start Tue Mar 31 2020 06:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 C 1.38478 * 119.82457 * 90.00143 * 15 14 12 17 17 C 1.37833 * 120.22582 * 179.97438 * 16 15 14 18 18 C 1.39720 * 119.87282 * 0.02562 * 17 16 15 19 19 C 1.47565 * 120.17252 * 179.97438 * 18 17 16 20 20 O 1.21493 * 119.99569 * 179.97438 * 19 18 17 21 21 O 1.34723 * 120.00239 * 359.97438 * 19 18 17 22 22 C 1.39886 * 119.65455 * 359.97438 * 18 17 16 23 23 F 1.35102 * 120.11347 * 180.02562 * 22 18 17 24 24 C 1.38197 * 119.82344 * 269.72317 * 15 14 12 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 30 30 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 31 31 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 32 32 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 33 33 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 34 34 H 1.08001 * 119.88549 * 359.97434 * 16 15 14 35 35 H 1.07996 * 120.06575 * 180.02562 * 17 16 15 36 36 H 0.96694 * 117.00557 * 180.02562 * 21 19 18 37 37 H 1.08001 * 119.94146 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 6 0.9331 -1.8274 -4.0463 17 6 1.2072 -2.6222 -5.1385 18 6 2.4227 -2.4826 -5.8133 19 6 2.7232 -3.3304 -6.9830 20 8 3.7809 -3.2060 -7.5677 21 8 1.8248 -4.2424 -7.4027 22 6 3.3532 -1.5349 -5.3742 23 9 4.5311 -1.3917 -6.0201 24 6 3.0606 -0.7409 -4.2800 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 3.8029 -1.3532 -0.3068 30 1 3.8209 -1.3107 -2.0864 31 1 3.9187 0.2052 -1.1592 32 1 0.4722 0.1326 -2.3564 33 1 2.0519 0.9348 -2.5279 34 1 -0.0061 -1.9354 -3.5242 35 1 0.4839 -3.3515 -5.4721 36 1 2.0665 -4.7748 -8.1728 37 1 3.7754 -0.0056 -3.9412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235107322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:48 Heat of formation + Delta-G solvation = -101.667930 kcal Electronic energy + Delta-G solvation = -21672.574604 eV Core-core repulsion = 18136.631253 eV Total energy + Delta-G solvation = -3535.943351 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -48.95182 -40.42275 -39.11995 -36.82537 -36.23023 -33.23726 -31.68940 -30.72717 -29.15824 -27.54345 -25.09425 -24.21296 -22.94381 -22.54776 -21.07802 -19.50876 -18.32305 -17.63825 -16.83621 -16.46427 -16.11675 -16.09604 -15.33908 -15.19772 -14.74207 -14.37127 -14.16342 -14.06583 -13.51813 -13.21183 -12.82372 -12.47088 -12.23891 -11.92279 -11.88662 -11.73311 -11.45474 -11.16610 -11.02697 -10.81690 -10.73963 -10.58808 -10.23255 -10.12578 -9.92534 -9.14945 -8.97611 -8.79198 -8.47311 -7.33560 -6.07562 -4.12403 0.46010 1.10776 2.36937 2.76681 3.28869 3.33473 3.36242 3.50503 4.01796 4.36174 4.50922 4.74880 4.86095 5.04841 5.13683 5.19061 5.25822 5.59463 5.67039 5.86163 5.96809 5.99507 6.05804 6.10574 6.24945 6.28265 6.50612 6.67177 6.70738 6.75357 6.94822 7.04069 7.40166 7.59526 7.68743 7.75655 8.07356 8.21907 8.47540 8.93200 9.52955 10.99215 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.003592 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.324386 B = 7794.222448 C = 7931.098579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.529 5.529 13 C 0.031 3.969 14 C 0.074 3.926 15 C 0.011 3.989 16 C -0.125 4.125 17 C -0.033 4.033 18 C -0.182 4.182 19 C 0.529 3.471 20 O -0.508 6.508 21 O -0.511 6.511 22 C 0.164 3.836 23 F -0.119 7.119 24 C -0.165 4.165 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.009 0.991 28 H 0.262 0.738 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.014 0.986 32 H 0.093 0.907 33 H 0.039 0.961 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.414 0.586 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -5.101 -15.833 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.254 5.254 13 C -0.117 4.117 14 C -0.054 4.054 15 C 0.010 3.990 16 C -0.144 4.144 17 C -0.052 4.052 18 C -0.184 4.184 19 C 0.373 3.627 20 O -0.397 6.397 21 O -0.323 6.323 22 C 0.144 3.856 23 F -0.097 7.097 24 C -0.184 4.184 25 H 0.055 0.945 26 H 0.105 0.895 27 H 0.028 0.972 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.111 0.889 33 H 0.057 0.943 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.272 0.728 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.712 -5.165 -15.497 16.350 hybrid contribution 1.081 0.049 0.255 1.111 sum 0.369 -5.117 -15.242 16.082 Atomic orbital electron populations 1.21885 0.97606 0.99799 1.00006 1.19293 0.92412 0.92086 0.85509 0.98191 1.21092 1.31301 1.12414 0.89631 0.91838 1.24922 0.95128 0.95041 0.99032 1.69873 1.36769 1.22940 1.23645 0.86569 0.79111 0.79775 0.82014 1.21336 1.20172 1.20326 1.62228 1.09641 1.52239 1.01247 1.22327 0.88520 0.99330 1.01551 1.21303 1.02315 0.93388 0.88380 1.20228 0.91438 0.93630 0.93671 1.21168 1.00999 0.95727 0.96508 1.21333 0.93994 0.96830 0.93002 1.18976 0.98180 1.01832 0.99436 1.20631 0.80981 0.78016 0.83034 1.90943 1.25099 1.67569 1.56136 1.84544 1.48381 1.48947 1.50466 1.17624 0.81302 0.94995 0.91708 1.91580 1.43795 1.94374 1.79986 1.21097 0.99294 1.02194 0.95858 0.94490 0.89500 0.97231 0.92849 0.90327 0.93574 0.96753 0.88852 0.94313 0.84029 0.83681 0.72784 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.76 37.16 0.33 -2.73 16 2 C 0.21 5.04 2.06 -68.87 -0.14 4.90 16 3 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 4 C -0.51 -13.26 7.93 -34.44 -0.27 -13.53 16 5 H 0.06 1.66 6.39 -52.49 -0.34 1.33 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.53 -10.48 4.61 -237.73 -1.10 -11.58 16 13 C 0.03 0.58 8.90 60.06 0.53 1.12 16 14 C 0.07 1.19 4.93 -4.97 -0.02 1.16 16 15 C 0.01 0.16 4.89 -104.55 -0.51 -0.35 16 16 C -0.13 -1.53 9.67 -39.64 -0.38 -1.91 16 17 C -0.03 -0.37 9.62 -39.18 -0.38 -0.75 16 18 C -0.18 -2.35 5.88 -104.92 -0.62 -2.97 16 19 C 0.53 6.66 8.27 34.53 0.29 6.94 16 20 O -0.51 -7.92 16.13 -19.26 -0.31 -8.23 16 21 O -0.51 -4.46 12.68 -40.55 -0.51 -4.97 16 22 C 0.16 2.30 7.29 -38.94 -0.28 2.02 16 23 F -0.12 -1.85 15.55 2.25 0.04 -1.81 16 24 C -0.17 -2.23 7.86 -39.57 -0.31 -2.54 16 25 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 27 H 0.01 0.18 6.20 -51.93 -0.32 -0.15 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.08 1.59 6.23 -51.93 -0.32 1.27 16 30 H 0.05 0.76 5.90 -51.93 -0.31 0.45 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.09 1.46 5.77 -51.93 -0.30 1.17 16 33 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 34 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 35 H 0.15 1.27 7.61 -52.49 -0.40 0.87 16 36 H 0.41 1.68 9.11 45.56 0.42 2.10 16 37 H 0.14 1.80 7.99 -52.49 -0.42 1.39 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -30.37 312.65 -6.99 -37.36 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.55 Total: -0.10 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.87 Total: -7.14 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.47 Total: -35.55 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.82 Total: -13.20 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.37 -6.99 -37.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235107322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.310 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds