Wall clock time and date at job start Tue Mar 31 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 C 1.38478 * 119.82457 * 90.00143 * 15 14 12 17 17 C 1.37833 * 120.22582 * 179.97438 * 16 15 14 18 18 C 1.39720 * 119.87282 * 0.02562 * 17 16 15 19 19 C 1.47565 * 120.17252 * 179.97438 * 18 17 16 20 20 O 1.21493 * 119.99569 * 179.97438 * 19 18 17 21 21 O 1.34723 * 120.00239 * 359.97438 * 19 18 17 22 22 C 1.39886 * 119.65455 * 359.97438 * 18 17 16 23 23 F 1.35102 * 120.11347 * 180.02562 * 22 18 17 24 24 C 1.38197 * 119.82344 * 269.72317 * 15 14 12 25 25 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 27 27 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 30 30 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 31 31 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 32 32 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 33 33 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 34 34 H 1.08001 * 119.88549 * 359.97434 * 16 15 14 35 35 H 1.07996 * 120.06575 * 180.02562 * 17 16 15 36 36 H 0.96694 * 117.00557 * 180.02562 * 21 19 18 37 37 H 1.08001 * 119.94146 * 0.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 6 0.9331 -1.8274 -4.0463 17 6 1.2072 -2.6222 -5.1385 18 6 2.4227 -2.4826 -5.8133 19 6 2.7232 -3.3304 -6.9830 20 8 3.7809 -3.2060 -7.5677 21 8 1.8248 -4.2424 -7.4027 22 6 3.3532 -1.5349 -5.3742 23 9 4.5311 -1.3917 -6.0201 24 6 3.0606 -0.7409 -4.2800 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1611 3.4845 29 1 3.8029 -1.3532 -0.3068 30 1 3.8209 -1.3107 -2.0864 31 1 3.9187 0.2052 -1.1592 32 1 0.4722 0.1326 -2.3564 33 1 2.0519 0.9348 -2.5279 34 1 -0.0061 -1.9354 -3.5242 35 1 0.4839 -3.3515 -5.4721 36 1 2.0665 -4.7748 -8.1728 37 1 3.7754 -0.0056 -3.9412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235107322.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:45 Heat of formation + Delta-G solvation = -121.229817 kcal Electronic energy + Delta-G solvation = -21673.422871 eV Core-core repulsion = 18136.631253 eV Total energy + Delta-G solvation = -3536.791618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -50.05892 -41.37640 -40.21850 -38.31766 -37.11035 -34.98427 -33.04172 -31.73901 -30.90066 -28.90880 -26.86219 -25.63687 -24.03798 -23.75938 -22.19393 -21.16640 -19.22739 -18.66799 -18.33600 -17.82664 -17.29395 -17.15189 -16.95697 -16.30525 -15.89128 -15.81522 -15.62180 -15.38622 -14.82144 -14.35270 -14.15300 -14.04305 -13.55985 -13.32250 -13.07405 -12.91588 -12.79012 -12.64181 -12.57464 -12.41242 -12.34409 -12.04752 -11.92851 -11.80678 -11.54242 -10.87657 -10.50445 -10.14788 -9.82895 -8.96363 -8.09346 -6.20345 -0.55642 0.12060 1.38738 1.45278 1.45829 1.53314 1.93097 2.42486 2.51570 2.99131 3.19690 3.41850 3.60400 3.72253 3.96423 4.13666 4.21251 4.42465 4.53831 4.63955 4.72432 4.76158 4.90907 4.95037 4.99979 5.06436 5.09503 5.11218 5.28958 5.46663 5.50593 5.54907 5.69513 5.74635 5.82524 6.29885 6.35962 6.70410 6.90953 6.93335 7.48722 8.96094 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.031477 B = 0.003592 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.324386 B = 7794.222448 C = 7931.098579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.216 3.784 3 H -0.034 1.034 4 C -0.520 4.520 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.286 1.286 10 H -0.272 1.272 11 H -0.274 1.274 12 N -0.533 5.533 13 C 0.036 3.964 14 C 0.077 3.923 15 C 0.000 4.000 16 C -0.120 4.120 17 C -0.017 4.017 18 C -0.187 4.187 19 C 0.535 3.465 20 O -0.545 6.545 21 O -0.496 6.496 22 C 0.145 3.855 23 F -0.133 7.133 24 C -0.164 4.164 25 H 0.036 0.964 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.261 0.739 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.010 0.990 32 H 0.099 0.901 33 H 0.038 0.962 34 H 0.158 0.842 35 H 0.177 0.823 36 H 0.436 0.564 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.534 -6.594 -16.815 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.109 3.891 3 H -0.016 1.016 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.781 3.219 9 H -0.211 1.211 10 H -0.197 1.197 11 H -0.200 1.200 12 N -0.257 5.257 13 C -0.112 4.112 14 C -0.050 4.050 15 C -0.001 4.001 16 C -0.139 4.139 17 C -0.035 4.035 18 C -0.189 4.189 19 C 0.381 3.619 20 O -0.437 6.437 21 O -0.310 6.310 22 C 0.125 3.875 23 F -0.111 7.111 24 C -0.183 4.183 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.028 0.972 32 H 0.117 0.883 33 H 0.056 0.944 34 H 0.176 0.824 35 H 0.194 0.806 36 H 0.298 0.702 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.592 -6.685 -16.509 17.882 hybrid contribution 1.314 0.470 0.451 1.467 sum -0.278 -6.215 -16.057 17.220 Atomic orbital electron populations 1.21691 0.96740 0.99662 1.00066 1.19084 0.93054 0.90230 0.86689 1.01616 1.21406 1.31130 1.12320 0.90962 0.92323 1.25636 0.95398 0.95720 1.01693 1.69999 1.37725 1.24076 1.24065 0.85656 0.78609 0.78807 0.78821 1.21120 1.19678 1.19987 1.62121 1.10101 1.52102 1.01391 1.22268 0.88105 0.99072 1.01762 1.21284 1.02466 0.93694 0.87558 1.20019 0.92256 0.94472 0.93315 1.21383 1.01095 0.94822 0.96576 1.21597 0.93537 0.96516 0.91802 1.19205 0.98480 1.01476 0.99722 1.20565 0.80705 0.78115 0.82548 1.90938 1.26727 1.68776 1.57265 1.84486 1.46899 1.48108 1.51462 1.17806 0.81404 0.96047 0.92248 1.91544 1.44655 1.94586 1.80321 1.21079 0.99323 1.02165 0.95765 0.94523 0.92318 0.94307 0.92967 0.92271 0.91196 0.97154 0.88256 0.94356 0.82406 0.80601 0.70202 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.54 8.76 71.98 0.63 -4.91 16 2 C 0.22 10.31 2.06 44.17 0.09 10.40 16 3 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 4 C -0.52 -27.45 7.93 25.60 0.20 -27.25 16 5 H 0.06 3.09 6.39 -2.91 -0.02 3.07 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -51.26 11.32 21.45 0.24 -51.02 16 8 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 9 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 N -0.53 -20.76 4.61 -906.04 -4.18 -24.95 16 13 C 0.04 1.35 8.90 127.69 1.14 2.48 16 14 C 0.08 2.39 4.93 85.56 0.42 2.81 16 15 C 0.00 0.01 4.89 -19.82 -0.10 -0.09 16 16 C -0.12 -2.56 9.67 22.23 0.22 -2.34 16 17 C -0.02 -0.31 9.62 22.53 0.22 -0.10 16 18 C -0.19 -4.40 5.88 -20.06 -0.12 -4.52 16 19 C 0.54 12.30 8.27 70.28 0.58 12.88 16 20 O -0.54 -16.40 16.13 19.86 0.32 -16.08 16 21 O -0.50 -6.93 12.68 -56.33 -0.71 -7.65 16 22 C 0.14 3.91 7.29 22.69 0.17 4.07 16 23 F -0.13 -4.09 15.55 44.97 0.70 -3.39 16 24 C -0.16 -4.24 7.86 22.28 0.18 -4.06 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 27 H 0.04 1.46 6.20 -2.38 -0.01 1.45 16 28 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.06 2.40 6.23 -2.39 -0.01 2.39 16 30 H 0.07 2.24 5.90 -2.39 -0.01 2.22 16 31 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 32 H 0.10 2.92 5.77 -2.38 -0.01 2.90 16 33 H 0.04 1.19 8.06 -2.39 -0.02 1.17 16 34 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.18 2.22 7.61 -2.91 -0.02 2.20 16 36 H 0.44 2.07 9.11 -74.06 -0.67 1.40 16 37 H 0.14 3.57 7.99 -2.91 -0.02 3.55 16 Total: -1.00 -65.57 312.65 2.90 -62.67 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.44 Total: 5.20 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.07 Total: -9.41 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -3.94 Total: -75.96 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.39 Total: -23.73 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.70 Total: -3.39 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -65.57 2.90 -62.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235107322.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.564 kcal (2) G-P(sol) polarization free energy of solvation -65.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds