Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47025 * 2 1 4 4 C 1.50697 * 109.46489 * 239.99780 * 2 1 3 5 5 H 1.08006 * 119.99750 * 245.45267 * 4 2 1 6 6 C 1.37875 * 120.00459 * 65.45970 * 4 2 1 7 7 N 1.31512 * 119.99385 * 9.61675 * 6 4 2 8 8 Si 1.86798 * 120.00082 * 189.61224 * 6 4 2 9 9 H 1.48507 * 109.47047 * 84.99616 * 8 6 4 10 10 H 1.48499 * 109.47220 * 204.99341 * 8 6 4 11 11 H 1.48491 * 109.47516 * 324.99674 * 8 6 4 12 12 N 1.46495 * 109.46957 * 120.00108 * 2 1 3 13 13 C 1.46504 * 120.00437 * 59.99288 * 12 2 1 14 14 C 1.34775 * 120.00047 * 239.99822 * 12 2 1 15 15 O 1.21289 * 120.00062 * 359.97438 * 14 12 2 16 16 C 1.50701 * 120.00437 * 179.97438 * 14 12 2 17 17 O 1.42901 * 109.47108 * 179.97438 * 16 14 12 18 18 C 1.35963 * 116.99757 * 179.97438 * 17 16 14 19 19 C 1.38662 * 120.06214 * 0.02562 * 18 17 16 20 20 C 1.38180 * 119.96853 * 179.97438 * 19 18 17 21 21 C 1.38260 * 120.09380 * 0.02562 * 20 19 18 22 22 C 1.38262 * 120.12698 * 359.97438 * 21 20 19 23 23 C 1.38328 * 120.03060 * 359.70845 * 22 21 20 24 24 F 1.35101 * 120.05156 * 180.27504 * 23 22 21 25 25 H 1.09010 * 109.46668 * 303.29049 * 1 2 3 26 26 H 1.08998 * 109.47013 * 63.28149 * 1 2 3 27 27 H 1.08994 * 109.47186 * 183.29190 * 1 2 3 28 28 H 0.97012 * 119.99695 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47059 * 270.00049 * 13 12 2 30 30 H 1.09003 * 109.46469 * 30.00149 * 13 12 2 31 31 H 1.09007 * 109.46953 * 149.99990 * 13 12 2 32 32 H 1.09000 * 109.47047 * 59.99846 * 16 14 12 33 33 H 1.09002 * 109.47199 * 299.99487 * 16 14 12 34 34 H 1.08001 * 120.01558 * 359.95213 * 19 18 17 35 35 H 1.07995 * 119.95038 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.93748 * 179.97438 * 21 20 19 37 37 H 1.07998 * 119.98364 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.5786 -1.6371 -1.1338 6 6 1.7944 -0.1776 -2.4796 7 7 1.3002 1.0358 -2.5935 8 14 2.1743 -1.1790 -4.0101 9 1 1.0212 -2.0610 -4.3233 10 1 2.4213 -0.2629 -5.1524 11 1 3.3820 -2.0093 -3.7713 12 7 2.0183 -0.6906 1.1961 13 6 1.6643 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0866 1.1254 1.8912 16 6 3.2951 -0.7459 3.3141 17 8 4.0896 0.1522 4.0915 18 6 4.6221 -0.3345 5.2440 19 6 4.3852 -1.6486 5.6180 20 6 4.9277 -2.1413 6.7894 21 6 5.7063 -1.3258 7.5897 22 6 5.9450 -0.0149 7.2205 23 6 5.4098 0.4818 6.0456 24 9 5.6474 1.7610 5.6817 25 1 -0.3633 0.5641 0.8591 26 1 -0.3633 0.4620 -0.9179 27 1 -0.3633 -1.0259 0.0590 28 1 1.1326 1.4107 -3.4724 29 1 0.7375 -2.1442 1.9995 30 1 1.5293 -2.5968 0.4709 31 1 2.4628 -2.5819 1.9865 32 1 3.9004 -1.6025 3.0178 33 1 2.4470 -1.0879 3.9074 34 1 3.7766 -2.2865 4.9942 35 1 4.7434 -3.1649 7.0802 36 1 6.1288 -1.7135 8.5050 37 1 6.5538 0.6199 7.8471 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259902893.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = -84.991577 kcal Electronic energy + Delta-G solvation = -21604.543921 eV Core-core repulsion = 18069.323711 eV Total energy + Delta-G solvation = -3535.220210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -48.76153 -40.27947 -38.95569 -37.34753 -35.34141 -32.92772 -30.91926 -30.60632 -29.73405 -27.63600 -26.19503 -25.21989 -23.15745 -22.60845 -21.15099 -18.71378 -18.50099 -17.15920 -16.87583 -16.55431 -16.37394 -15.92101 -15.41101 -15.33036 -15.04782 -14.55560 -14.31933 -14.11564 -13.53288 -12.95958 -12.75175 -12.60609 -12.52377 -12.21195 -11.89356 -11.80469 -11.63988 -11.31725 -11.20866 -11.03450 -10.93435 -10.77301 -10.33494 -10.21902 -9.29418 -9.15923 -9.01152 -8.43992 -8.33737 -7.72032 -6.12280 -4.17776 0.91542 1.06967 2.74269 3.18915 3.25003 3.32389 3.34104 3.38055 3.93826 4.15858 4.36990 4.51987 4.59848 4.83742 4.97524 5.00756 5.07187 5.12009 5.20294 5.29026 5.57412 5.76339 5.83715 5.88637 5.95854 6.14518 6.23057 6.43735 6.62561 6.69986 6.92292 7.13098 7.29638 7.47963 7.63054 7.87747 8.10401 8.39682 8.78247 8.93748 9.47176 10.95232 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030650 B = 0.003576 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.311802 B = 7828.115518 C = 8073.940831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.257 3.743 3 H 0.071 0.929 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.589 5.589 13 C 0.078 3.922 14 C 0.505 3.495 15 O -0.525 6.525 16 C 0.041 3.959 17 O -0.279 6.279 18 C 0.103 3.897 19 C -0.187 4.187 20 C -0.089 4.089 21 C -0.136 4.136 22 C -0.117 4.117 23 C 0.069 3.931 24 F -0.129 7.129 25 H 0.016 0.984 26 H 0.077 0.923 27 H 0.032 0.968 28 H 0.265 0.735 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -9.366 18.368 21.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.157 3.843 3 H 0.089 0.911 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.322 5.322 13 C -0.066 4.066 14 C 0.290 3.710 15 O -0.401 6.401 16 C -0.037 4.037 17 O -0.191 6.191 18 C 0.056 3.944 19 C -0.206 4.206 20 C -0.108 4.108 21 C -0.154 4.154 22 C -0.136 4.136 23 C 0.049 3.951 24 F -0.108 7.108 25 H 0.036 0.964 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.634 -8.340 17.980 20.355 hybrid contribution 0.080 -0.705 -0.967 1.199 sum 4.714 -9.045 17.014 19.837 Atomic orbital electron populations 1.22018 0.98354 0.98943 1.00584 1.19007 0.90516 0.95194 0.79539 0.91073 1.21243 1.36891 1.08680 0.90316 0.92128 1.24906 0.95062 0.94616 0.99000 1.69977 1.44086 1.13667 1.24216 0.86543 0.78667 0.79987 0.82411 1.20450 1.21152 1.19958 1.48171 1.49011 1.11651 1.23381 1.21688 0.98816 0.83225 1.02842 1.19733 0.80251 0.87376 0.83686 1.90729 1.56917 1.16577 1.75847 1.22757 0.95364 0.92934 0.92692 1.86280 1.63361 1.38738 1.30699 1.19194 0.94954 0.92765 0.87500 1.21232 1.05273 0.94044 1.00024 1.21005 0.96191 1.00046 0.93527 1.20903 1.00619 0.93051 1.00832 1.21024 1.00722 0.97020 0.94845 1.17046 1.02283 0.80042 0.95689 1.91536 1.92905 1.34744 1.91572 0.96439 0.90423 0.94847 0.92564 0.93508 0.89596 0.92997 0.89234 0.89366 0.84364 0.85064 0.84968 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.12 37.16 0.34 -2.90 16 2 C 0.26 6.50 2.50 -69.08 -0.17 6.32 16 3 H 0.07 2.13 6.84 -51.93 -0.36 1.78 16 4 C -0.53 -14.19 8.01 -34.44 -0.28 -14.47 16 5 H 0.06 1.57 7.16 -52.48 -0.38 1.19 16 6 C 0.07 1.84 5.17 -17.82 -0.09 1.75 16 7 N -0.88 -25.21 12.16 55.43 0.67 -24.53 16 8 Si 0.90 20.76 29.55 -169.99 -5.02 15.74 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.59 -12.25 2.75 -175.26 -0.48 -12.74 16 13 C 0.08 1.19 9.16 59.85 0.55 1.74 16 14 C 0.51 10.67 7.75 -10.99 -0.09 10.59 16 15 O -0.52 -13.81 15.83 -14.36 -0.23 -14.04 16 16 C 0.04 0.63 3.77 36.01 0.14 0.76 16 17 O -0.28 -4.92 9.54 -39.54 -0.38 -5.29 16 18 C 0.10 1.46 6.69 -39.18 -0.26 1.20 16 19 C -0.19 -1.96 9.04 -39.45 -0.36 -2.32 16 20 C -0.09 -0.74 10.04 -39.59 -0.40 -1.14 16 21 C -0.14 -1.11 10.04 -39.56 -0.40 -1.50 16 22 C -0.12 -1.18 10.02 -39.54 -0.40 -1.57 16 23 C 0.07 0.96 7.31 -39.30 -0.29 0.67 16 24 F -0.13 -2.09 17.11 2.25 0.04 -2.05 16 25 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 26 H 0.08 1.96 6.84 -51.93 -0.36 1.61 16 27 H 0.03 0.69 7.56 -51.93 -0.39 0.29 16 28 H 0.26 7.17 8.31 -40.81 -0.34 6.83 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.40 6.92 -51.93 -0.36 1.04 16 31 H 0.05 0.60 6.44 -51.93 -0.33 0.27 16 32 H 0.09 1.12 6.92 -51.93 -0.36 0.76 16 33 H 0.09 1.06 7.63 -51.93 -0.40 0.66 16 34 H 0.14 1.16 6.30 -52.49 -0.33 0.83 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -33.61 318.27 -6.81 -40.41 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.51 Total: -1.42 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.70 Total: -0.87 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.19 Total: -37.27 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.60 Total: -19.33 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.61 -6.81 -40.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902893.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.578 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds