Wall clock time and date at job start Tue Mar 31 2020 06:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.50696 * 109.47106 * 240.00066 * 2 1 3 5 5 H 1.08006 * 120.00263 * 245.62402 * 4 2 1 6 6 C 1.37875 * 120.00299 * 65.61831 * 4 2 1 7 7 N 1.31511 * 120.00157 * 196.97108 * 6 4 2 8 8 Si 1.86798 * 119.99893 * 17.24348 * 6 4 2 9 9 H 1.48496 * 109.47439 * 179.72791 * 8 6 4 10 10 H 1.48507 * 109.47069 * 299.72536 * 8 6 4 11 11 H 1.48497 * 109.47361 * 59.72470 * 8 6 4 12 12 N 1.46504 * 109.47160 * 119.99809 * 2 1 3 13 13 C 1.46504 * 119.99520 * 60.00191 * 12 2 1 14 14 C 1.34773 * 119.99967 * 239.99712 * 12 2 1 15 15 O 1.21276 * 120.00208 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99611 * 179.97438 * 14 12 2 17 17 O 1.42900 * 109.46843 * 180.02562 * 16 14 12 18 18 C 1.35952 * 116.99994 * 179.97438 * 17 16 14 19 19 C 1.38703 * 120.02794 * 359.72627 * 18 17 16 20 20 C 1.38159 * 119.96976 * 179.79169 * 19 18 17 21 21 C 1.38459 * 120.02400 * 0.47826 * 20 19 18 22 22 F 1.35102 * 119.96539 * 179.72304 * 21 20 19 23 23 C 1.38448 * 120.06250 * 359.75298 * 21 20 19 24 24 C 1.38152 * 120.03223 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47120 * 305.88392 * 1 2 3 26 26 H 1.08996 * 109.47559 * 65.88235 * 1 2 3 27 27 H 1.08995 * 109.47228 * 185.88417 * 1 2 3 28 28 H 0.96996 * 120.00531 * 355.07916 * 7 6 4 29 29 H 1.08999 * 109.47383 * 90.00059 * 13 12 2 30 30 H 1.09000 * 109.46583 * 210.00076 * 13 12 2 31 31 H 1.08995 * 109.47202 * 329.99662 * 13 12 2 32 32 H 1.09003 * 109.47647 * 300.00130 * 16 14 12 33 33 H 1.09000 * 109.47342 * 60.00595 * 16 14 12 34 34 H 1.07999 * 120.01735 * 0.02562 * 19 18 17 35 35 H 1.07991 * 119.98889 * 180.20854 * 20 19 18 36 36 H 1.08003 * 119.98547 * 180.02562 * 23 21 20 37 37 H 1.07997 * 120.01463 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5763 -1.6384 -1.1340 6 6 1.7974 -0.1757 -2.4794 7 7 1.9263 -0.9269 -3.5511 8 14 1.3034 1.6177 -2.6498 9 1 1.1172 1.9456 -4.0860 10 1 0.0317 1.8524 -1.9196 11 1 2.3684 2.4809 -2.0790 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2950 -0.7458 3.3140 17 8 4.0886 0.1525 4.0921 18 6 4.6209 -0.3341 5.2445 19 6 4.3792 -1.6471 5.6206 20 6 4.9243 -2.1416 6.7899 21 6 5.7035 -1.3241 7.5910 22 9 6.2313 -1.8073 8.7369 23 6 5.9416 -0.0120 7.2191 24 6 5.4015 0.4837 6.0481 25 1 -0.3633 0.6023 0.8326 26 1 -0.3634 0.4199 -0.9379 27 1 -0.3633 -1.0222 0.1053 28 1 2.2553 -1.8357 -3.4698 29 1 2.4157 -2.7377 0.9717 30 1 1.6237 -2.2852 2.5002 31 1 0.6904 -2.3002 0.9847 32 1 2.4470 -1.0880 3.9073 33 1 3.9004 -1.6025 3.0178 34 1 3.7682 -2.2837 4.9979 35 1 4.7391 -3.1648 7.0813 36 1 6.5499 0.6245 7.8447 37 1 5.5870 1.5075 5.7585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259908508.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:12 Heat of formation + Delta-G solvation = -84.331152 kcal Electronic energy + Delta-G solvation = -21384.928058 eV Core-core repulsion = 17849.736487 eV Total energy + Delta-G solvation = -3535.191571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 3.67 seconds Orbital eigenvalues (eV) -49.03039 -40.46016 -39.14591 -37.24399 -35.55082 -32.97829 -31.58833 -30.77234 -29.74430 -27.75739 -26.42154 -24.79795 -23.45340 -22.53588 -21.07303 -18.71522 -18.52754 -17.61305 -17.56622 -16.89266 -16.41945 -16.15949 -15.71847 -15.45679 -14.91839 -14.56121 -14.17186 -13.88184 -13.61043 -13.25525 -13.05121 -12.94209 -12.82244 -12.42018 -12.29684 -12.18802 -11.73884 -11.58636 -11.39986 -11.13038 -11.02412 -10.52718 -10.03542 -9.80269 -9.47254 -9.27937 -9.11629 -8.39932 -8.32294 -7.91682 -6.55401 -4.20548 0.87763 0.97026 2.68234 3.01567 3.31619 3.34253 3.45984 3.58306 3.85545 4.06838 4.39255 4.40983 4.49341 4.71312 4.81082 4.91653 5.03301 5.07224 5.17325 5.30076 5.43367 5.59865 5.79858 5.83139 5.89012 5.97282 6.04708 6.27930 6.33801 6.42496 6.51029 6.86916 6.98770 7.15531 7.31465 7.73773 8.13122 8.26211 8.62107 8.82140 9.48179 10.82776 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.038775 B = 0.003301 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.935311 B = 8480.404684 C = 8770.136490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.235 3.765 3 H 0.057 0.943 4 C -0.613 4.613 5 H 0.061 0.939 6 C 0.037 3.963 7 N -0.900 5.900 8 Si 1.040 2.960 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.278 1.278 12 N -0.583 5.583 13 C 0.083 3.917 14 C 0.507 3.493 15 O -0.530 6.530 16 C 0.041 3.959 17 O -0.284 6.284 18 C 0.128 3.872 19 C -0.185 4.185 20 C -0.111 4.111 21 C 0.052 3.948 22 F -0.144 7.144 23 C -0.112 4.112 24 C -0.122 4.122 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.268 0.732 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 -3.258 19.935 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.651 4.651 5 H 0.079 0.921 6 C -0.169 4.169 7 N -0.533 5.533 8 Si 0.867 3.133 9 H -0.209 1.209 10 H -0.199 1.199 11 H -0.204 1.204 12 N -0.316 5.316 13 C -0.060 4.060 14 C 0.292 3.708 15 O -0.406 6.406 16 C -0.037 4.037 17 O -0.195 6.195 18 C 0.081 3.919 19 C -0.204 4.204 20 C -0.129 4.129 21 C 0.032 3.968 22 F -0.123 7.123 23 C -0.130 4.130 24 C -0.141 4.141 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.157 0.843 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.592 -1.323 18.635 18.861 hybrid contribution 0.517 -1.853 1.300 2.322 sum 3.110 -3.176 19.935 20.425 Atomic orbital electron populations 1.22528 0.98465 1.00404 1.00620 1.19252 0.90501 0.94795 0.82037 0.92577 1.22150 1.41400 1.10571 0.90969 0.92102 1.25689 0.94484 1.04955 0.91793 1.70878 1.41126 1.10010 1.31276 0.84123 0.77512 0.75370 0.76274 1.20874 1.19899 1.20357 1.47908 1.48934 1.11862 1.22914 1.21647 1.02358 0.82749 0.99281 1.19772 0.79993 0.87299 0.83779 1.90698 1.57139 1.16641 1.76152 1.22694 0.95486 0.92993 0.92538 1.86222 1.63409 1.38790 1.31113 1.19158 0.93768 0.92261 0.86680 1.21175 1.04963 0.95250 0.99024 1.20922 0.97386 1.00288 0.94352 1.17568 1.00624 0.93422 0.85160 1.91483 1.84982 1.88417 1.47372 1.20953 1.00825 0.94087 0.97175 1.20334 0.99059 1.00903 0.93794 0.95375 0.91371 0.93280 0.92194 0.92732 0.92877 0.90298 0.89291 0.89159 0.84338 0.84465 0.84047 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 8.96 37.16 0.33 -3.05 16 2 C 0.24 5.55 2.22 -69.08 -0.15 5.40 16 3 H 0.06 1.46 5.56 -51.93 -0.29 1.17 16 4 C -0.61 -16.52 8.68 -34.44 -0.30 -16.82 16 5 H 0.06 1.74 7.75 -52.48 -0.41 1.33 16 6 C 0.04 1.04 5.30 -17.82 -0.09 0.94 16 7 N -0.90 -26.72 13.70 55.43 0.76 -25.96 16 8 Si 1.04 24.96 26.29 -169.99 -4.47 20.49 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.27 -5.97 5.74 56.52 0.32 -5.64 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.58 -11.56 2.75 -175.26 -0.48 -12.04 16 13 C 0.08 1.25 9.43 59.85 0.56 1.81 16 14 C 0.51 9.92 7.75 -10.99 -0.09 9.83 16 15 O -0.53 -12.73 15.83 -14.35 -0.23 -12.95 16 16 C 0.04 0.58 3.77 36.00 0.14 0.71 16 17 O -0.28 -4.35 9.67 -39.50 -0.38 -4.73 16 18 C 0.13 1.58 6.69 -39.24 -0.26 1.32 16 19 C -0.19 -1.88 9.04 -39.44 -0.36 -2.23 16 20 C -0.11 -1.05 10.02 -39.53 -0.40 -1.44 16 21 C 0.05 0.53 7.30 -39.42 -0.29 0.24 16 22 F -0.14 -1.55 17.27 2.25 0.04 -1.51 16 23 C -0.11 -1.07 10.02 -39.54 -0.40 -1.47 16 24 C -0.12 -1.34 9.98 -39.44 -0.39 -1.73 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 1.49 4.85 -51.93 -0.25 1.24 16 27 H 0.05 0.94 6.45 -51.93 -0.33 0.61 16 28 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 29 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 30 H 0.05 0.56 6.44 -51.93 -0.33 0.23 16 31 H 0.08 1.20 6.33 -51.93 -0.33 0.87 16 32 H 0.09 0.95 6.91 -51.93 -0.36 0.59 16 33 H 0.09 1.06 7.64 -51.93 -0.40 0.66 16 34 H 0.14 1.12 6.30 -52.49 -0.33 0.79 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 311.93 15.07 4.70 4.70 Total: -1.00 -32.93 311.93 -6.12 -39.05 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.37 Total: -0.56 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: -1.69 Total: -6.49 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: 0.28 Total: -38.00 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.61 Total: -17.68 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -4.47 Total: 20.49 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.93 -6.12 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908508.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.278 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.67 seconds