Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47538 * 2 1 4 4 H 1.08995 * 109.46381 * 303.00520 * 3 2 1 5 5 O 1.42900 * 109.46843 * 63.00346 * 3 2 1 6 6 C 1.35953 * 116.99976 * 259.45198 * 5 3 2 7 7 C 1.38664 * 120.06118 * 5.63010 * 6 5 3 8 8 C 1.38185 * 119.96666 * 179.72182 * 7 6 5 9 9 C 1.38262 * 120.09450 * 0.55524 * 8 7 6 10 10 C 1.38260 * 120.12809 * 359.72342 * 9 8 7 11 11 C 1.38330 * 120.02509 * 359.97438 * 10 9 8 12 12 F 1.35105 * 120.04523 * 180.02562 * 11 10 9 13 13 C 1.50693 * 109.47216 * 183.00520 * 3 2 1 14 14 O 1.21288 * 119.99955 * 253.65240 * 13 3 2 15 15 N 1.34783 * 120.00012 * 73.65120 * 13 3 2 16 16 C 1.46497 * 119.99984 * 5.05479 * 15 13 3 17 17 C 1.37098 * 119.99838 * 185.05119 * 15 13 3 18 18 H 1.07998 * 120.00238 * 29.02996 * 17 15 13 19 19 C 1.38951 * 119.99730 * 209.03986 * 17 15 13 20 20 N 1.31407 * 120.00262 * 7.56225 * 19 17 15 21 21 Si 1.86801 * 119.99950 * 187.55936 * 19 17 15 22 22 H 1.48503 * 109.46668 * 89.99693 * 21 19 17 23 23 H 1.48500 * 109.47337 * 209.99824 * 21 19 17 24 24 H 1.48505 * 109.47174 * 330.00300 * 21 19 17 25 25 H 1.09002 * 109.46735 * 59.99872 * 1 2 3 26 26 H 1.09004 * 109.47202 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47092 * 300.00287 * 1 2 3 28 28 H 1.09003 * 109.47092 * 239.99713 * 2 1 3 29 29 H 1.08997 * 109.47176 * 119.99956 * 2 1 3 30 30 H 1.07995 * 120.01578 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.95374 * 180.28123 * 8 7 6 32 32 H 1.08004 * 119.93549 * 179.74585 * 9 8 7 33 33 H 1.08002 * 119.98574 * 179.97438 * 10 9 8 34 34 H 1.08996 * 109.47697 * 93.03580 * 16 15 13 35 35 H 1.09001 * 109.46599 * 213.03525 * 16 15 13 36 36 H 1.08998 * 109.46831 * 333.03043 * 16 15 13 37 37 H 0.96998 * 120.00186 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6334 1.9715 -0.8618 5 8 1.6223 2.0954 1.2005 6 6 0.5428 2.9171 1.1126 7 6 -0.1711 3.0017 -0.0732 8 6 -1.2715 3.8331 -0.1587 9 6 -1.6551 4.5898 0.9331 10 6 -0.9427 4.5130 2.1155 11 6 0.1559 3.6776 2.2087 12 9 0.8520 3.6018 3.3642 13 6 3.5452 1.4431 -0.0745 14 8 4.2008 1.7213 0.9073 15 7 4.1628 1.1344 -1.2320 16 6 3.3737 0.9068 -2.4452 17 6 5.5294 1.0335 -1.2742 18 1 6.0762 0.7340 -0.3923 19 6 6.2109 1.3168 -2.4514 20 7 5.5661 1.8228 -3.4785 21 14 8.0439 0.9783 -2.5741 22 1 8.2597 -0.4034 -3.0736 23 1 8.6644 1.9469 -3.5133 24 1 8.6647 1.1223 -1.2327 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.1304 2.4149 -0.9283 31 1 -1.8300 3.8954 -1.0810 32 1 -2.5131 5.2420 0.8622 33 1 -1.2442 5.1054 2.9668 34 1 3.2903 1.8385 -3.0046 35 1 3.8654 0.1551 -3.0626 36 1 2.3784 0.5572 -2.1709 37 1 6.0418 2.0202 -4.3005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267357941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = -76.997116 kcal Electronic energy + Delta-G solvation = -22502.662100 eV Core-core repulsion = 18967.788556 eV Total energy + Delta-G solvation = -3534.873544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.56321 -40.33961 -38.51809 -37.05652 -34.68337 -33.53479 -31.53283 -30.66496 -29.86303 -27.51178 -26.15280 -24.31904 -23.31128 -22.39124 -21.34136 -19.26207 -18.51807 -16.97719 -16.78072 -16.46911 -16.01567 -15.75764 -15.12353 -14.88690 -14.76549 -14.49751 -14.07210 -13.91315 -13.51368 -13.18442 -12.81175 -12.70934 -12.27431 -12.03796 -11.78252 -11.64968 -11.51067 -11.50165 -11.31563 -11.14601 -10.97607 -10.60298 -10.42376 -10.35988 -10.29329 -9.06785 -8.92169 -8.47160 -7.97897 -7.69436 -6.35271 -3.98785 1.13406 1.30210 3.12828 3.14094 3.23912 3.31755 3.60697 3.73952 4.11412 4.33153 4.67690 4.76163 4.86794 4.97985 5.00384 5.19330 5.19992 5.22905 5.32711 5.47609 5.55676 5.77503 5.84155 5.95292 5.99147 6.06572 6.15548 6.19113 6.20395 6.37007 6.43328 6.70357 6.73340 7.11926 7.49330 7.51609 8.09590 8.43141 9.12511 9.31378 9.88053 10.68443 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025100 B = 0.004673 C = 0.004519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.258548 B = 5989.886327 C = 6195.145007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.140 4.140 3 C 0.072 3.928 4 H 0.091 0.909 5 O -0.272 6.272 6 C 0.111 3.889 7 C -0.190 4.190 8 C -0.089 4.089 9 C -0.140 4.140 10 C -0.118 4.118 11 C 0.063 3.937 12 F -0.132 7.132 13 C 0.448 3.552 14 O -0.563 6.563 15 N -0.441 5.441 16 C 0.101 3.899 17 C -0.305 4.305 18 H 0.096 0.904 19 C 0.034 3.966 20 N -0.883 5.883 21 Si 0.928 3.072 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.268 1.268 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.143 0.857 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.581 0.935 1.663 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.012 3.988 4 H 0.109 0.891 5 O -0.184 6.184 6 C 0.063 3.937 7 C -0.208 4.208 8 C -0.107 4.107 9 C -0.158 4.158 10 C -0.137 4.137 11 C 0.043 3.957 12 F -0.110 7.110 13 C 0.234 3.766 14 O -0.445 6.445 15 N -0.162 5.162 16 C -0.043 4.043 17 C -0.433 4.433 18 H 0.114 0.886 19 C -0.169 4.169 20 N -0.522 5.522 21 Si 0.755 3.245 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.160 0.840 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.023 1.067 2.157 15.214 hybrid contribution 0.924 -0.115 -0.384 1.007 sum -14.099 0.952 1.773 14.242 Atomic orbital electron populations 1.21917 0.95260 1.02034 1.01894 1.22028 0.96318 0.95038 1.04367 1.22539 0.95935 0.93813 0.86514 0.89142 1.86294 1.41908 1.56016 1.34144 1.19217 0.88985 0.91752 0.93702 1.21354 0.98162 1.03906 0.97394 1.20981 0.95832 0.95088 0.98776 1.20849 1.01027 1.01418 0.92547 1.20973 0.94258 0.98693 0.99789 1.17036 0.95268 1.01303 0.82080 1.91513 1.78141 1.95326 1.46045 1.19746 0.87240 0.83870 0.85725 1.90569 1.66033 1.51648 1.36239 1.43422 1.06532 1.59592 1.06612 1.21709 0.91922 1.02457 0.88176 1.19608 0.80593 1.44245 0.98852 0.88595 1.25416 1.00320 0.95444 0.95768 1.69930 1.36790 1.41503 1.04006 0.85888 0.82083 0.78021 0.78519 1.20295 1.20832 1.19259 0.92493 0.92200 0.92467 0.89156 0.90348 0.83970 0.85216 0.85175 0.84386 0.91835 0.91428 0.95133 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.52 37.16 0.32 -1.59 16 2 C -0.14 -2.21 5.28 -26.73 -0.14 -2.35 16 3 C 0.07 1.39 1.69 -27.88 -0.05 1.34 16 4 H 0.09 1.57 4.53 -51.93 -0.24 1.33 16 5 O -0.27 -5.57 8.95 -39.12 -0.35 -5.92 16 6 C 0.11 1.88 5.63 -39.18 -0.22 1.66 16 7 C -0.19 -2.58 7.48 -39.44 -0.30 -2.87 16 8 C -0.09 -0.96 10.04 -39.59 -0.40 -1.36 16 9 C -0.14 -1.44 10.04 -39.56 -0.40 -1.84 16 10 C -0.12 -1.43 10.02 -39.54 -0.40 -1.83 16 11 C 0.06 1.01 7.31 -39.30 -0.29 0.73 16 12 F -0.13 -2.38 17.11 2.25 0.04 -2.34 16 13 C 0.45 11.29 6.93 -10.99 -0.08 11.21 16 14 O -0.56 -16.70 16.36 -13.98 -0.23 -16.93 16 15 N -0.44 -11.21 3.00 -122.20 -0.37 -11.58 16 16 C 0.10 2.15 8.14 59.85 0.49 2.63 16 17 C -0.31 -8.50 9.12 -14.93 -0.14 -8.63 16 18 H 0.10 2.80 7.57 -52.49 -0.40 2.40 16 19 C 0.03 0.90 5.19 -17.47 -0.09 0.80 16 20 N -0.88 -23.29 10.81 55.50 0.60 -22.69 16 21 Si 0.93 20.71 29.56 -169.99 -5.02 15.69 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H 0.06 0.61 6.74 -51.93 -0.35 0.26 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.76 6.66 -51.93 -0.35 0.41 16 28 H 0.09 1.37 6.15 -51.93 -0.32 1.05 16 29 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.14 1.79 4.41 -52.49 -0.23 1.56 16 31 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 34 H 0.06 1.42 7.36 -51.93 -0.38 1.04 16 35 H 0.07 1.49 7.47 -51.93 -0.39 1.10 16 36 H 0.03 0.52 4.52 -51.93 -0.23 0.28 16 37 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 306.71 15.07 4.62 4.62 Total: -1.00 -32.88 306.71 -6.52 -39.40 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.13 Total: 1.84 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -1.68 Total: -2.10 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.23 Total: -34.26 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.58 Total: -22.84 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.88 -6.52 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267357941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.596 kcal (2) G-P(sol) polarization free energy of solvation -32.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds