Wall clock time and date at job start Tue Mar 31 2020 06:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 5 5 C 1.46901 * 110.99870 * 85.00132 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.46807 * 179.97438 * 6 5 4 8 8 H 1.07995 * 120.00107 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99714 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99834 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 120.00034 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47154 * 89.99933 * 11 9 7 13 13 H 1.48501 * 109.47128 * 209.99734 * 11 9 7 14 14 H 1.48501 * 109.47273 * 329.99905 * 11 9 7 15 15 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 16 16 C 1.38238 * 119.99746 * 79.73055 * 15 2 1 17 17 C 1.38232 * 119.99740 * 179.76538 * 16 15 2 18 18 C 1.38239 * 119.99792 * 0.50575 * 17 16 15 19 19 S 1.76205 * 119.99757 * 179.72440 * 18 17 16 20 20 C 1.81406 * 102.99997 * 270.02036 * 19 18 17 21 21 O 1.42100 * 103.00173 * 23.87404 * 19 18 17 22 22 C 1.38225 * 120.00154 * 359.74513 * 18 17 16 23 23 C 1.38232 * 120.00358 * 359.97438 * 22 18 17 24 24 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 25 25 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 26 26 H 1.09000 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.00901 * 110.99869 * 321.04843 * 4 2 1 28 28 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 29 29 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 30 30 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 31 31 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 32 32 H 0.96997 * 120.00332 * 179.97438 * 10 9 7 33 33 H 1.07997 * 119.99876 * 359.97438 * 16 15 2 34 34 H 1.07997 * 119.99895 * 180.22306 * 17 16 15 35 35 H 1.08994 * 109.46815 * 60.00135 * 20 19 18 36 36 H 1.08993 * 109.46838 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.46890 * 300.00059 * 20 19 18 38 38 H 1.08006 * 120.00185 * 179.97438 * 22 18 17 39 39 H 1.08001 * 120.00568 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0825 0.2226 -2.3469 6 6 2.5951 -0.5332 -3.5745 7 6 2.6589 0.4055 -4.7518 8 1 2.3631 1.4377 -4.6361 9 6 3.0950 -0.0535 -5.9766 10 7 3.1502 0.7655 -7.0040 11 14 3.6060 -1.8390 -6.1769 12 1 2.4264 -2.6502 -6.5715 13 1 4.6503 -1.9401 -7.2279 14 1 4.1477 -2.3462 -4.8905 15 6 2.0324 -0.7104 1.2305 16 6 2.0615 -2.0920 1.2674 17 6 2.5268 -2.7436 2.3942 18 6 2.9532 -2.0137 3.4881 19 16 3.5395 -2.8444 4.9272 20 6 2.0337 -3.0606 5.9155 21 8 3.9586 -4.1042 4.4206 22 6 2.9191 -0.6323 3.4531 23 6 2.4593 0.0194 2.3241 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4495 -1.4979 -1.4101 28 1 1.0871 0.6163 -2.5526 29 1 2.7589 1.0462 -2.1182 30 1 3.5904 -0.9271 -3.3691 31 1 1.9183 -1.3564 -3.8030 32 1 3.4574 0.4427 -7.8656 33 1 1.7239 -2.6622 0.4146 34 1 2.5530 -3.8229 2.4217 35 1 1.3126 -3.6542 5.3537 36 1 2.2801 -3.5724 6.8457 37 1 1.6039 -2.0847 6.1410 38 1 3.2519 -0.0621 4.3078 39 1 2.4323 1.0987 2.2969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271776014.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:09 Heat of formation + Delta-G solvation = -20.792023 kcal Electronic energy + Delta-G solvation = -19013.609430 eV Core-core repulsion = 16047.386298 eV Total energy + Delta-G solvation = -2966.223132 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.57329 -36.72847 -35.92204 -33.49379 -31.88841 -31.04273 -29.86365 -29.03872 -28.17807 -24.52170 -23.51315 -22.65921 -20.64892 -20.34922 -18.29566 -16.86448 -16.81437 -15.74068 -15.53613 -15.05384 -14.89695 -14.38847 -14.35460 -13.96933 -13.80800 -13.57720 -13.36701 -13.10270 -12.88467 -12.59686 -12.47697 -12.33556 -12.12355 -11.69295 -11.42865 -11.31688 -11.03445 -10.91846 -10.41170 -10.13151 -9.90323 -9.78861 -9.25530 -9.09562 -9.00210 -8.57084 -8.54847 -8.01552 -6.05865 -4.04425 0.79790 1.33279 1.69488 2.47823 3.31537 3.39491 3.45881 3.51029 3.75483 4.43263 4.45506 4.76869 4.81230 4.86223 4.88149 4.95258 5.14623 5.25139 5.28887 5.34877 5.43977 5.63351 5.65477 5.75770 5.77031 5.94919 6.03239 6.13413 6.16506 6.18917 6.33023 6.53732 6.72854 6.87162 7.09815 7.33914 7.55580 7.69236 7.84862 8.50999 8.97818 9.56617 11.07409 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.027614 B = 0.003132 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.727696 B = 8936.655126 C = 9556.652562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.112 3.888 3 H 0.089 0.911 4 N -0.686 5.686 5 C 0.074 3.926 6 C -0.010 4.010 7 C -0.522 4.522 8 H 0.071 0.929 9 C 0.067 3.933 10 N -0.904 5.904 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.263 1.263 15 C -0.020 4.020 16 C -0.113 4.113 17 C -0.054 4.054 18 C -0.470 4.470 19 S 1.330 4.670 20 C -0.499 4.499 21 O -0.860 6.860 22 C -0.045 4.045 23 C -0.136 4.136 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.336 0.664 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.008 0.992 32 H 0.263 0.737 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.954 -2.173 28.456 28.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.002 3.998 3 H 0.107 0.893 4 N -0.317 5.317 5 C -0.053 4.053 6 C -0.048 4.048 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.134 4.134 10 N -0.542 5.542 11 Si 0.708 3.292 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.188 1.188 15 C -0.021 4.021 16 C -0.133 4.133 17 C -0.073 4.073 18 C -0.568 4.568 19 S 1.528 4.472 20 C -0.655 4.655 21 O -0.855 6.855 22 C -0.065 4.065 23 C -0.156 4.156 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.154 0.846 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.142 0.858 34 H 0.141 0.859 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.128 0.872 38 H 0.151 0.849 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.323 -2.386 28.631 28.761 hybrid contribution -2.407 -1.872 -1.810 3.546 sum -3.730 -4.258 26.821 27.412 Atomic orbital electron populations 1.22473 0.96251 1.02305 1.02493 1.20570 0.92683 0.97711 0.88835 0.89298 1.60716 1.56442 1.10286 1.04223 1.22001 0.98889 0.95028 0.89427 1.19548 0.96595 0.96032 0.92610 1.21051 1.44383 0.97760 0.92816 0.91096 1.25000 0.94953 0.97634 0.95791 1.69908 1.47710 1.35400 1.01224 0.86759 0.78641 0.85577 0.78233 1.20411 1.21376 1.18759 1.20147 0.93771 0.93835 0.94320 1.21044 1.00198 0.94285 0.97742 1.21069 0.93805 0.99798 0.92645 1.27460 1.13723 1.02248 1.13339 1.69352 0.91151 0.96069 0.90668 1.27780 1.18594 1.08053 1.11121 1.93114 1.72054 1.42646 1.77712 1.20726 0.95671 0.92192 0.97885 1.21127 1.00857 1.00003 0.93584 0.92207 0.91662 0.92451 0.84586 0.95769 0.91605 0.95630 0.97349 0.92698 0.85787 0.85949 0.90137 0.87871 0.87198 0.84867 0.85547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.14 37.16 0.34 -1.72 16 2 C 0.11 1.50 2.79 -68.86 -0.19 1.31 16 3 H 0.09 1.18 7.66 -51.93 -0.40 0.78 16 4 N -0.69 -11.33 5.71 -107.94 -0.62 -11.95 16 5 C 0.07 1.47 5.42 -3.82 -0.02 1.45 16 6 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 7 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 10 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 11 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 15 C -0.02 -0.25 4.95 -104.62 -0.52 -0.77 16 16 C -0.11 -1.52 9.32 -39.58 -0.37 -1.89 16 17 C -0.05 -0.71 9.44 -39.58 -0.37 -1.08 16 18 C -0.47 -4.80 5.61 -39.59 -0.22 -5.03 16 19 S 1.33 9.79 14.19 -107.50 -1.53 8.27 16 20 C -0.50 -3.01 10.70 101.05 1.08 -1.93 16 21 O -0.86 -12.42 16.90 -35.23 -0.60 -13.01 16 22 C -0.05 -0.39 9.75 -39.59 -0.39 -0.77 16 23 C -0.14 -1.41 9.67 -39.58 -0.38 -1.80 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.81 7.45 -51.93 -0.39 0.42 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.34 5.28 7.82 -39.29 -0.31 4.97 16 28 H 0.02 0.47 7.44 -51.93 -0.39 0.08 16 29 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 30 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 31 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.12 1.64 7.26 -52.49 -0.38 1.26 16 34 H 0.12 1.70 7.46 -52.49 -0.39 1.31 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.11 0.42 8.14 -51.92 -0.42 -0.01 16 38 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 39 H 0.13 1.05 8.04 -52.49 -0.42 0.63 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -37.31 336.21 -9.14 -46.45 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.98 Total: 0.98 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.59 Total: -25.99 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.16 Total: -39.26 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.60 Total: -13.01 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Atomic # 16 Polarization: 9.79 SS G_CDS: -1.53 Total: 8.27 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.31 -9.14 -46.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271776014.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.656 kcal (2) G-P(sol) polarization free energy of solvation -37.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds