Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46542 * 2 1 4 4 N 1.46893 * 109.47367 * 120.00108 * 2 1 3 5 5 C 1.46899 * 111.00540 * 275.00110 * 4 2 1 6 6 C 1.52992 * 109.47305 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47038 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99643 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00162 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00183 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00220 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47029 * 59.99955 * 11 9 7 13 13 H 1.48497 * 109.47505 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47232 * 300.00014 * 11 9 7 15 15 C 1.50701 * 109.47023 * 240.00546 * 2 1 3 16 16 C 1.38235 * 119.99808 * 99.99679 * 15 2 1 17 17 C 1.38243 * 119.99602 * 179.97438 * 16 15 2 18 18 C 1.38232 * 120.00069 * 0.09581 * 17 16 15 19 19 S 1.76204 * 119.99908 * 179.97438 * 18 17 16 20 20 C 1.81399 * 102.99807 * 269.91087 * 19 18 17 21 21 O 1.42097 * 102.99886 * 156.05655 * 19 18 17 22 22 C 1.38234 * 119.99866 * 359.86117 * 18 17 16 23 23 C 1.38230 * 119.99865 * 279.97425 * 15 2 1 24 24 H 1.08997 * 109.46859 * 299.99305 * 1 2 3 25 25 H 1.08999 * 109.47404 * 59.99936 * 1 2 3 26 26 H 1.09000 * 109.46480 * 179.97438 * 1 2 3 27 27 H 1.00901 * 111.00265 * 38.95605 * 4 2 1 28 28 H 1.09003 * 109.46735 * 300.00297 * 5 4 2 29 29 H 1.09006 * 109.46661 * 59.99712 * 5 4 2 30 30 H 1.08995 * 109.47253 * 300.00087 * 6 5 4 31 31 H 1.09000 * 109.47451 * 60.00726 * 6 5 4 32 32 H 0.96990 * 120.00137 * 180.02562 * 10 9 7 33 33 H 1.08000 * 120.00616 * 359.70324 * 16 15 2 34 34 H 1.08001 * 119.99556 * 179.97438 * 17 16 15 35 35 H 1.08994 * 109.47731 * 59.99888 * 20 19 18 36 36 H 1.09003 * 109.47021 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.47166 * 299.99904 * 20 19 18 38 38 H 1.08000 * 119.99729 * 180.02562 * 22 18 17 39 39 H 1.08001 * 120.00371 * 0.02562 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3469 6 6 2.5952 -0.5333 3.5743 7 6 2.6590 0.4052 4.7517 8 1 2.3639 1.4376 4.6359 9 6 3.0952 -0.0539 5.9765 10 7 3.4550 -1.3110 6.1174 11 14 3.1736 1.1093 7.4360 12 1 1.8169 1.6445 7.7159 13 1 3.6713 0.3758 8.6274 14 1 4.0944 2.2322 7.1252 15 6 2.0323 -0.7103 -1.2305 16 6 2.4586 0.0197 -2.3243 17 6 2.9199 -0.6319 -3.4529 18 6 2.9530 -2.0134 -3.4884 19 16 3.5403 -2.8439 -4.9272 20 6 2.0351 -3.0611 -5.9159 21 8 3.9599 -4.1034 -4.4203 22 6 2.5275 -2.7433 -2.3942 23 6 2.0672 -2.0917 -1.2653 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.4497 -1.4979 1.4100 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 1.9185 -1.3567 3.8028 31 1 3.5905 -0.9273 3.3690 32 1 3.7615 -1.6340 6.9791 33 1 2.4273 1.0989 -2.2988 34 1 3.2526 -0.0616 -4.3076 35 1 1.6047 -2.0855 -6.1417 36 1 2.2819 -3.5737 -6.8457 37 1 1.3140 -3.6550 -5.3543 38 1 2.5537 -3.8226 -2.4218 39 1 1.7341 -2.6620 -0.4108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271776015.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = -24.044208 kcal Electronic energy + Delta-G solvation = -18950.813156 eV Core-core repulsion = 15984.448999 eV Total energy + Delta-G solvation = -2966.364157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -39.50451 -36.61696 -35.87420 -33.46741 -31.77777 -30.97537 -29.64087 -28.96726 -27.83695 -24.45652 -23.50040 -22.66383 -20.60694 -20.46328 -18.24071 -16.81920 -16.36649 -15.69531 -15.40647 -15.00858 -14.81704 -14.42652 -14.27840 -14.09079 -13.80106 -13.49500 -13.30946 -12.98889 -12.69390 -12.50095 -12.40568 -12.09081 -12.03125 -11.59176 -11.23550 -11.14080 -10.94421 -10.83516 -10.58096 -10.33682 -10.05934 -9.44948 -9.20353 -9.01644 -8.93715 -8.52080 -8.36506 -7.88282 -6.00570 -4.03713 0.85637 1.39396 1.74432 2.52553 3.32437 3.37056 3.39016 3.56806 3.80742 4.40338 4.56985 4.83687 4.89930 4.90321 4.93665 4.99664 5.21238 5.31469 5.35192 5.41516 5.49994 5.67166 5.71723 5.82268 5.83214 6.01070 6.09593 6.20894 6.26992 6.31262 6.42873 6.61581 6.93398 6.93942 7.42858 7.69005 7.78093 7.89984 8.06071 8.41203 9.03331 9.60113 11.10825 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.002840 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.048471 B = 9857.480792 C =10285.888779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.112 3.888 3 H 0.087 0.913 4 N -0.683 5.683 5 C 0.067 3.933 6 C 0.025 3.975 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.276 1.276 15 C -0.019 4.019 16 C -0.137 4.137 17 C -0.046 4.046 18 C -0.471 4.471 19 S 1.330 4.670 20 C -0.499 4.499 21 O -0.859 6.859 22 C -0.054 4.054 23 C -0.112 4.112 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.337 0.663 28 H 0.059 0.941 29 H 0.017 0.983 30 H 0.013 0.987 31 H 0.025 0.975 32 H 0.261 0.739 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.615 2.549 -26.060 26.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.001 3.999 3 H 0.105 0.895 4 N -0.314 5.314 5 C -0.061 4.061 6 C -0.012 4.012 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.144 4.144 10 N -0.532 5.532 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.020 4.020 16 C -0.157 4.157 17 C -0.066 4.066 18 C -0.568 4.568 19 S 1.527 4.473 20 C -0.656 4.656 21 O -0.855 6.855 22 C -0.073 4.073 23 C -0.131 4.131 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.141 0.859 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.966 2.191 -26.292 26.456 hybrid contribution -2.596 -0.426 2.392 3.555 sum -4.562 1.765 -23.900 24.395 Atomic orbital electron populations 1.22473 0.96397 1.02298 1.02309 1.20576 0.92577 0.97637 0.89090 0.89503 1.60703 1.56358 1.10225 1.04087 1.22200 0.98283 0.95224 0.90386 1.19059 0.97040 0.95285 0.89811 1.21122 1.44217 0.96334 0.94521 0.92805 1.25008 0.95342 0.95116 0.98891 1.69961 1.44259 1.14382 1.24595 0.86640 0.78370 0.80913 0.81950 1.20301 1.21254 1.20190 1.20158 0.93693 0.93861 0.94310 1.21118 1.00961 0.99936 0.93640 1.20717 0.95782 0.92193 0.97860 1.27444 1.13794 1.02231 1.13343 1.69329 0.91141 0.96096 0.90718 1.27785 1.18634 1.08023 1.11130 1.93116 1.72021 1.42658 1.77710 1.21076 0.93787 0.99819 0.92615 1.21063 1.00055 0.94302 0.97717 0.91770 0.92339 0.92431 0.84457 0.92262 0.96431 0.96863 0.95641 0.92890 0.85632 0.84923 0.87220 0.87896 0.90131 0.85921 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.16 9.14 37.16 0.34 -1.82 16 2 C 0.11 1.57 2.79 -68.87 -0.19 1.38 16 3 H 0.09 1.20 7.66 -51.93 -0.40 0.81 16 4 N -0.68 -12.05 5.70 -107.95 -0.62 -12.66 16 5 C 0.07 1.39 5.42 -3.83 -0.02 1.37 16 6 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 11 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 15 C -0.02 -0.26 4.96 -104.63 -0.52 -0.78 16 16 C -0.14 -1.50 9.67 -39.58 -0.38 -1.88 16 17 C -0.05 -0.41 9.75 -39.58 -0.39 -0.80 16 18 C -0.47 -5.06 5.61 -39.58 -0.22 -5.28 16 19 S 1.33 10.40 14.19 -107.50 -1.53 8.87 16 20 C -0.50 -3.20 10.70 101.05 1.08 -2.12 16 21 O -0.86 -12.85 16.90 -35.23 -0.60 -13.44 16 22 C -0.05 -0.74 9.44 -39.58 -0.37 -1.11 16 23 C -0.11 -1.59 9.32 -39.59 -0.37 -1.96 16 24 H 0.06 0.83 7.45 -51.93 -0.39 0.44 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.34 5.78 7.82 -39.29 -0.31 5.48 16 28 H 0.06 1.23 8.06 -51.93 -0.42 0.82 16 29 H 0.02 0.35 7.44 -51.93 -0.39 -0.03 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.13 1.10 8.04 -52.49 -0.42 0.68 16 34 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.12 1.78 7.46 -52.49 -0.39 1.39 16 39 H 0.13 1.78 7.25 -52.49 -0.38 1.40 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -36.87 339.80 -9.51 -46.38 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -6.01 Total: 1.56 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: -1.60 Total: -26.11 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.12 Total: -39.13 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.60 Total: -13.44 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 10.40 SS G_CDS: -1.53 Total: 8.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.87 -9.51 -46.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271776015.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.337 kcal (2) G-P(sol) polarization free energy of solvation -36.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds