Wall clock time and date at job start Tue Mar 31 2020 06:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46542 * 2 1 4 4 N 1.46893 * 109.47367 * 120.00108 * 2 1 3 5 5 C 1.46899 * 111.00540 * 275.00110 * 4 2 1 6 6 C 1.52992 * 109.47305 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47038 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99643 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00162 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00183 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00220 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47029 * 59.99955 * 11 9 7 13 13 H 1.48497 * 109.47505 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47232 * 300.00014 * 11 9 7 15 15 C 1.50701 * 109.47023 * 240.00546 * 2 1 3 16 16 C 1.38235 * 119.99808 * 99.99679 * 15 2 1 17 17 C 1.38243 * 119.99602 * 179.97438 * 16 15 2 18 18 C 1.38232 * 120.00069 * 0.09581 * 17 16 15 19 19 S 1.76204 * 119.99908 * 179.97438 * 18 17 16 20 20 C 1.81399 * 102.99807 * 269.91087 * 19 18 17 21 21 O 1.42097 * 102.99886 * 156.05655 * 19 18 17 22 22 C 1.38234 * 119.99866 * 359.86117 * 18 17 16 23 23 C 1.38230 * 119.99865 * 279.97425 * 15 2 1 24 24 H 1.08997 * 109.46859 * 299.99305 * 1 2 3 25 25 H 1.08999 * 109.47404 * 59.99936 * 1 2 3 26 26 H 1.09000 * 109.46480 * 179.97438 * 1 2 3 27 27 H 1.00901 * 111.00265 * 38.95605 * 4 2 1 28 28 H 1.09003 * 109.46735 * 300.00297 * 5 4 2 29 29 H 1.09006 * 109.46661 * 59.99712 * 5 4 2 30 30 H 1.08995 * 109.47253 * 300.00087 * 6 5 4 31 31 H 1.09000 * 109.47451 * 60.00726 * 6 5 4 32 32 H 0.96990 * 120.00137 * 180.02562 * 10 9 7 33 33 H 1.08000 * 120.00616 * 359.70324 * 16 15 2 34 34 H 1.08001 * 119.99556 * 179.97438 * 17 16 15 35 35 H 1.08994 * 109.47731 * 59.99888 * 20 19 18 36 36 H 1.09003 * 109.47021 * 180.02562 * 20 19 18 37 37 H 1.09004 * 109.47166 * 299.99904 * 20 19 18 38 38 H 1.08000 * 119.99729 * 180.02562 * 22 18 17 39 39 H 1.08001 * 120.00371 * 0.02562 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3469 6 6 2.5952 -0.5333 3.5743 7 6 2.6590 0.4052 4.7517 8 1 2.3639 1.4376 4.6359 9 6 3.0952 -0.0539 5.9765 10 7 3.4550 -1.3110 6.1174 11 14 3.1736 1.1093 7.4360 12 1 1.8169 1.6445 7.7159 13 1 3.6713 0.3758 8.6274 14 1 4.0944 2.2322 7.1252 15 6 2.0323 -0.7103 -1.2305 16 6 2.4586 0.0197 -2.3243 17 6 2.9199 -0.6319 -3.4529 18 6 2.9530 -2.0134 -3.4884 19 16 3.5403 -2.8439 -4.9272 20 6 2.0351 -3.0611 -5.9159 21 8 3.9599 -4.1034 -4.4203 22 6 2.5275 -2.7433 -2.3942 23 6 2.0672 -2.0917 -1.2653 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 1.4497 -1.4979 1.4100 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 1.9185 -1.3567 3.8028 31 1 3.5905 -0.9273 3.3690 32 1 3.7615 -1.6340 6.9791 33 1 2.4273 1.0989 -2.2988 34 1 3.2526 -0.0616 -4.3076 35 1 1.6047 -2.0855 -6.1417 36 1 2.2819 -3.5737 -6.8457 37 1 1.3140 -3.6550 -5.3543 38 1 2.5537 -3.8226 -2.4218 39 1 1.7341 -2.6620 -0.4108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271776015.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:11 Heat of formation + Delta-G solvation = -50.604605 kcal Electronic energy + Delta-G solvation = -18951.964902 eV Core-core repulsion = 15984.448999 eV Total energy + Delta-G solvation = -2967.515902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47421 -37.92144 -36.85655 -35.40880 -33.37635 -31.88833 -30.90056 -29.61640 -29.30519 -26.20169 -24.66721 -23.72059 -22.39937 -21.53698 -19.04374 -18.54047 -17.68931 -16.83049 -16.59208 -16.31139 -16.09231 -15.76867 -15.34452 -15.26424 -14.62961 -14.52688 -14.28985 -14.16939 -14.13259 -13.78374 -13.46957 -13.35023 -13.06500 -12.90266 -12.83456 -12.61253 -12.46053 -12.17230 -12.00877 -11.87154 -11.45534 -11.32725 -11.17828 -10.58994 -9.98651 -9.85276 -9.36413 -9.24994 -8.22479 -6.34886 -0.00779 0.48377 1.02719 1.38735 1.42490 1.50468 1.83929 2.38669 2.68627 3.04256 3.10928 3.31666 3.79368 3.87112 4.08870 4.20831 4.26976 4.34827 4.48197 4.51240 4.52467 4.57475 4.63947 4.78500 4.85627 4.91676 5.03319 5.09826 5.16206 5.19140 5.32863 5.35822 5.42050 5.60868 5.65136 5.77890 6.04459 6.11847 6.25899 6.44406 6.82783 7.34880 8.89708 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.002840 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.048471 B = 9857.480792 C =10285.888779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 H 0.095 0.905 4 N -0.695 5.695 5 C 0.088 3.912 6 C 0.031 3.969 7 C -0.544 4.544 8 H 0.064 0.936 9 C -0.002 4.002 10 N -0.935 5.935 11 Si 0.970 3.030 12 H -0.265 1.265 13 H -0.284 1.284 14 H -0.265 1.265 15 C -0.038 4.038 16 C -0.138 4.138 17 C -0.031 4.031 18 C -0.477 4.477 19 S 1.400 4.600 20 C -0.495 4.495 21 O -0.935 6.935 22 C -0.084 4.084 23 C -0.135 4.135 24 H 0.056 0.944 25 H 0.082 0.918 26 H 0.051 0.949 27 H 0.336 0.664 28 H 0.061 0.939 29 H 0.025 0.975 30 H -0.013 1.013 31 H -0.011 1.011 32 H 0.264 0.736 33 H 0.156 0.844 34 H 0.194 0.806 35 H 0.144 0.856 36 H 0.121 0.879 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 5.725 -28.379 29.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.004 3.996 3 H 0.113 0.887 4 N -0.325 5.325 5 C -0.041 4.041 6 C -0.006 4.006 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.200 4.200 10 N -0.575 5.575 11 Si 0.794 3.206 12 H -0.189 1.189 13 H -0.210 1.210 14 H -0.189 1.189 15 C -0.038 4.038 16 C -0.157 4.157 17 C -0.049 4.049 18 C -0.573 4.573 19 S 1.599 4.401 20 C -0.653 4.653 21 O -0.931 6.931 22 C -0.103 4.103 23 C -0.154 4.154 24 H 0.075 0.925 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.006 0.994 31 H 0.007 0.993 32 H 0.072 0.928 33 H 0.173 0.827 34 H 0.211 0.789 35 H 0.163 0.837 36 H 0.140 0.860 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.341 5.381 -28.612 29.207 hybrid contribution -2.508 -1.451 2.946 4.132 sum -4.849 3.930 -25.666 26.414 Atomic orbital electron populations 1.22386 0.95002 1.02259 1.03077 1.20639 0.93771 0.97553 0.87615 0.88696 1.60598 1.57525 1.10062 1.04327 1.21784 0.98250 0.94715 0.89337 1.18917 0.94611 0.94845 0.92254 1.21591 1.44121 0.97091 0.95469 0.91759 1.26040 0.94692 0.96886 1.02385 1.70118 1.45207 1.16626 1.25514 0.85434 0.79057 0.78571 0.77577 1.18939 1.20978 1.18932 1.20166 0.95215 0.93344 0.95103 1.21556 0.99666 1.01425 0.93071 1.21390 0.93170 0.91386 0.98959 1.27858 1.12626 1.03528 1.13266 1.68369 0.90682 0.93013 0.88050 1.27750 1.16688 1.09993 1.10909 1.92987 1.75093 1.46186 1.78809 1.21036 0.96027 0.99051 0.94190 1.20998 1.01667 0.95145 0.97623 0.92510 0.89885 0.92942 0.84632 0.92028 0.95637 0.99434 0.99252 0.92766 0.82677 0.78921 0.83724 0.86023 0.92419 0.88375 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 9.14 71.98 0.66 -3.30 16 2 C 0.11 3.13 2.79 44.17 0.12 3.25 16 3 H 0.09 2.44 7.66 -2.38 -0.02 2.43 16 4 N -0.69 -25.25 5.70 -495.46 -2.83 -28.08 16 5 C 0.09 3.69 5.42 86.30 0.47 4.16 16 6 C 0.03 1.71 5.23 29.85 0.16 1.86 16 7 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 10 N -0.93 -58.55 13.29 21.45 0.28 -58.27 16 11 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 15 C -0.04 -0.97 4.96 -19.87 -0.10 -1.07 16 16 C -0.14 -2.55 9.67 22.27 0.22 -2.34 16 17 C -0.03 -0.42 9.75 22.27 0.22 -0.20 16 18 C -0.48 -9.50 5.61 22.27 0.12 -9.38 16 19 S 1.40 19.38 14.19 -56.49 -0.80 18.58 16 20 C -0.50 -4.87 10.70 113.37 1.21 -3.65 16 21 O -0.93 -28.53 16.90 -148.98 -2.52 -31.05 16 22 C -0.08 -2.42 9.44 22.27 0.21 -2.21 16 23 C -0.13 -4.03 9.32 22.27 0.21 -3.83 16 24 H 0.06 1.41 7.45 -2.39 -0.02 1.39 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 27 H 0.34 12.27 7.82 -89.69 -0.70 11.57 16 28 H 0.06 2.55 8.06 -2.39 -0.02 2.53 16 29 H 0.03 1.03 7.44 -2.38 -0.02 1.01 16 30 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H 0.26 15.52 8.31 -92.72 -0.77 14.75 16 33 H 0.16 1.95 8.04 -2.91 -0.02 1.92 16 34 H 0.19 0.31 8.06 -2.91 -0.02 0.28 16 35 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 3.19 7.46 -2.91 -0.02 3.17 16 39 H 0.11 3.40 7.25 -2.91 -0.02 3.38 16 Total: -1.00 -84.99 339.80 0.68 -84.31 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.33 Total: 15.40 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 4.19 Total: -47.63 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.54 Total: -86.34 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -2.52 Total: -31.05 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 19.38 SS G_CDS: -0.80 Total: 18.58 kcal Total: -84.99 0.68 -84.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271776015.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.702 kcal (2) G-P(sol) polarization free energy of solvation -84.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds