Wall clock time and date at job start Tue Mar 31 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46542 * 2 1 4 4 N 1.46893 * 109.47367 * 120.00108 * 2 1 3 5 5 C 1.46899 * 111.00540 * 275.00110 * 4 2 1 6 6 C 1.52992 * 109.47305 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47038 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99643 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00162 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00183 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00220 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47272 * 89.99888 * 11 9 7 13 13 H 1.48498 * 109.47567 * 209.99689 * 11 9 7 14 14 H 1.48501 * 109.47177 * 330.00188 * 11 9 7 15 15 C 1.50701 * 109.47023 * 240.00546 * 2 1 3 16 16 C 1.38235 * 119.99808 * 99.99679 * 15 2 1 17 17 C 1.38243 * 119.99602 * 179.97438 * 16 15 2 18 18 C 1.38232 * 120.00069 * 0.09581 * 17 16 15 19 19 S 1.76203 * 119.99887 * 179.97438 * 18 17 16 20 20 C 1.81402 * 102.99899 * 269.86464 * 19 18 17 21 21 O 1.42101 * 103.00078 * 23.71308 * 19 18 17 22 22 C 1.38234 * 119.99842 * 359.83724 * 18 17 16 23 23 C 1.38230 * 119.99865 * 279.97425 * 15 2 1 24 24 H 1.09000 * 109.46480 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46859 * 299.99305 * 1 2 3 26 26 H 1.08999 * 109.47404 * 59.99936 * 1 2 3 27 27 H 1.00901 * 111.00265 * 38.95605 * 4 2 1 28 28 H 1.09003 * 109.46735 * 300.00297 * 5 4 2 29 29 H 1.09006 * 109.46661 * 59.99712 * 5 4 2 30 30 H 1.08995 * 109.47253 * 300.00087 * 6 5 4 31 31 H 1.09000 * 109.47451 * 60.00726 * 6 5 4 32 32 H 0.96990 * 120.00137 * 180.02562 * 10 9 7 33 33 H 1.08000 * 120.00616 * 359.70324 * 16 15 2 34 34 H 1.08001 * 119.99556 * 179.97438 * 17 16 15 35 35 H 1.09011 * 109.47292 * 59.99693 * 20 19 18 36 36 H 1.09000 * 109.47498 * 179.97438 * 20 19 18 37 37 H 1.09007 * 109.46947 * 300.00426 * 20 19 18 38 38 H 1.08008 * 119.99453 * 180.11401 * 22 18 17 39 39 H 1.08001 * 120.00350 * 359.97438 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3469 6 6 2.5952 -0.5333 3.5743 7 6 2.6590 0.4052 4.7517 8 1 2.3639 1.4376 4.6359 9 6 3.0952 -0.0539 5.9765 10 7 3.4550 -1.3110 6.1174 11 14 3.1736 1.1093 7.4360 12 1 1.8796 1.0783 8.1638 13 1 4.2652 0.6851 8.3490 14 1 3.4383 2.4893 6.9556 15 6 2.0323 -0.7103 -1.2305 16 6 2.4586 0.0197 -2.3243 17 6 2.9199 -0.6319 -3.4529 18 6 2.9530 -2.0134 -3.4884 19 16 3.5403 -2.8439 -4.9272 20 6 2.0348 -3.0623 -5.9153 21 8 4.3727 -1.8696 -5.5413 22 6 2.5280 -2.7433 -2.3941 23 6 2.0672 -2.0917 -1.2653 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.4497 -1.4979 1.4100 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 1.9185 -1.3567 3.8028 31 1 3.5905 -0.9273 3.3690 32 1 3.7615 -1.6340 6.9791 33 1 2.4273 1.0989 -2.2988 34 1 3.2526 -0.0616 -4.3076 35 1 1.6037 -2.0869 -6.1412 36 1 2.2817 -3.5742 -6.8454 37 1 1.3143 -3.6566 -5.3532 38 1 2.5556 -3.8226 -2.4212 39 1 1.7349 -2.6620 -0.4105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271776017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:23 Heat of formation + Delta-G solvation = -24.362786 kcal Electronic energy + Delta-G solvation = -18934.280599 eV Core-core repulsion = 15967.902627 eV Total energy + Delta-G solvation = -2966.377972 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.50868 -36.62660 -35.88411 -33.47569 -31.79017 -30.97588 -29.64187 -28.96882 -27.84375 -24.46415 -23.48574 -22.69856 -20.61061 -20.45674 -18.25039 -16.83868 -16.38171 -15.70638 -15.40301 -15.01043 -14.81371 -14.43425 -14.29928 -14.06576 -13.81152 -13.50065 -13.29521 -12.99252 -12.74784 -12.51014 -12.40899 -12.09647 -11.99961 -11.64957 -11.17631 -11.14788 -10.97438 -10.86822 -10.56288 -10.34310 -10.07261 -9.45926 -9.20122 -9.02165 -8.94021 -8.51913 -8.37599 -7.89447 -6.01935 -4.04609 0.85200 1.39221 1.73760 2.52298 3.30448 3.36950 3.40233 3.56074 3.79825 4.39834 4.57681 4.80495 4.88484 4.91593 4.95811 4.99361 5.22097 5.31127 5.34196 5.39177 5.50970 5.66935 5.72040 5.81873 5.82567 6.00853 6.08734 6.22656 6.24358 6.31086 6.41896 6.61551 6.92777 6.93378 7.41168 7.68145 7.77446 7.89533 8.04819 8.40520 9.02490 9.59333 11.09496 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035629 B = 0.002779 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.682382 B =10074.481981 C =10327.967056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 H 0.085 0.915 4 N -0.682 5.682 5 C 0.066 3.934 6 C 0.026 3.974 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.893 3.107 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.019 4.019 16 C -0.135 4.135 17 C -0.054 4.054 18 C -0.471 4.471 19 S 1.331 4.669 20 C -0.499 4.499 21 O -0.862 6.862 22 C -0.046 4.046 23 C -0.115 4.115 24 H 0.058 0.942 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.337 0.663 28 H 0.058 0.942 29 H 0.017 0.983 30 H 0.014 0.986 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.342 -6.682 -21.449 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.001 3.999 3 H 0.103 0.897 4 N -0.312 5.312 5 C -0.062 4.062 6 C -0.011 4.011 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.019 4.019 16 C -0.155 4.155 17 C -0.074 4.074 18 C -0.568 4.568 19 S 1.529 4.471 20 C -0.655 4.655 21 O -0.858 6.858 22 C -0.065 4.065 23 C -0.134 4.134 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.156 0.844 28 H 0.077 0.923 29 H 0.036 0.964 30 H 0.032 0.968 31 H 0.044 0.956 32 H 0.070 0.930 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.152 0.848 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.679 -6.980 -21.712 23.101 hybrid contribution -2.004 2.800 0.788 3.532 sum -5.683 -4.180 -20.924 22.082 Atomic orbital electron populations 1.22468 0.96336 1.02349 1.02280 1.20570 0.92610 0.97658 0.89094 0.89698 1.60702 1.56283 1.10223 1.04004 1.22206 0.98302 0.95256 0.90401 1.19059 0.97043 0.95277 0.89769 1.21164 1.44055 0.96382 0.94512 0.92794 1.24998 0.95334 0.95123 0.98878 1.69965 1.44401 1.14373 1.24460 0.86588 0.77666 0.81184 0.82517 1.20702 1.21157 1.19905 1.20144 0.93641 0.94158 0.94006 1.21094 1.00874 0.99904 0.93579 1.20984 0.94729 0.93684 0.97953 1.27433 1.13873 1.01735 1.13745 1.69403 0.83051 1.10088 0.84596 1.27785 1.18749 1.07080 1.11933 1.93094 1.55226 1.62655 1.74784 1.20815 0.94487 0.99457 0.91723 1.21093 1.00175 0.94153 0.97972 0.92254 0.91780 0.92461 0.84438 0.92328 0.96428 0.96801 0.95608 0.92958 0.86100 0.86016 0.90199 0.87882 0.87142 0.84804 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 9.14 37.16 0.34 -1.79 16 2 C 0.11 1.57 2.79 -68.87 -0.19 1.38 16 3 H 0.08 1.24 7.66 -51.93 -0.40 0.84 16 4 N -0.68 -11.58 5.70 -107.95 -0.62 -12.20 16 5 C 0.07 1.36 5.42 -3.83 -0.02 1.33 16 6 C 0.03 0.67 5.23 -27.88 -0.15 0.52 16 7 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 11 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 15 C -0.02 -0.25 4.96 -104.63 -0.52 -0.77 16 16 C -0.13 -1.77 9.67 -39.58 -0.38 -2.16 16 17 C -0.05 -0.71 9.44 -39.58 -0.37 -1.08 16 18 C -0.47 -5.06 5.61 -39.59 -0.22 -5.28 16 19 S 1.33 10.41 14.19 -107.50 -1.53 8.89 16 20 C -0.50 -3.19 10.70 101.05 1.08 -2.11 16 21 O -0.86 -12.57 16.90 -35.23 -0.60 -13.17 16 22 C -0.05 -0.44 9.75 -39.58 -0.39 -0.83 16 23 C -0.11 -1.38 9.32 -39.59 -0.37 -1.75 16 24 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 25 H 0.06 0.82 7.45 -51.93 -0.39 0.43 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.34 5.39 7.82 -39.29 -0.31 5.09 16 28 H 0.06 1.23 8.06 -51.93 -0.42 0.81 16 29 H 0.02 0.35 7.44 -51.93 -0.39 -0.04 16 30 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.12 1.43 8.04 -52.49 -0.42 1.00 16 34 H 0.12 1.64 7.45 -52.49 -0.39 1.25 16 35 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 37 H 0.11 0.48 8.14 -51.92 -0.42 0.05 16 38 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 1.46 7.25 -52.49 -0.38 1.08 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -36.16 339.80 -9.51 -45.67 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.01 Total: 1.10 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.60 Total: -26.00 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.12 Total: -38.20 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.60 Total: -13.17 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 10.41 SS G_CDS: -1.53 Total: 8.89 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.16 -9.51 -45.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271776017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.312 kcal (2) G-P(sol) polarization free energy of solvation -36.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds