Wall clock time and date at job start Tue Mar 31 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46542 * 2 1 4 4 N 1.46893 * 109.47367 * 120.00108 * 2 1 3 5 5 C 1.46899 * 111.00540 * 275.00110 * 4 2 1 6 6 C 1.52992 * 109.47305 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47038 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99643 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00162 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00183 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00220 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47272 * 89.99888 * 11 9 7 13 13 H 1.48498 * 109.47567 * 209.99689 * 11 9 7 14 14 H 1.48501 * 109.47177 * 330.00188 * 11 9 7 15 15 C 1.50701 * 109.47023 * 240.00546 * 2 1 3 16 16 C 1.38235 * 119.99808 * 99.99679 * 15 2 1 17 17 C 1.38243 * 119.99602 * 179.97438 * 16 15 2 18 18 C 1.38232 * 120.00069 * 0.09581 * 17 16 15 19 19 S 1.76203 * 119.99887 * 179.97438 * 18 17 16 20 20 C 1.81402 * 102.99899 * 269.86464 * 19 18 17 21 21 O 1.42101 * 103.00078 * 23.71308 * 19 18 17 22 22 C 1.38234 * 119.99842 * 359.83724 * 18 17 16 23 23 C 1.38230 * 119.99865 * 279.97425 * 15 2 1 24 24 H 1.09000 * 109.46480 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46859 * 299.99305 * 1 2 3 26 26 H 1.08999 * 109.47404 * 59.99936 * 1 2 3 27 27 H 1.00901 * 111.00265 * 38.95605 * 4 2 1 28 28 H 1.09003 * 109.46735 * 300.00297 * 5 4 2 29 29 H 1.09006 * 109.46661 * 59.99712 * 5 4 2 30 30 H 1.08995 * 109.47253 * 300.00087 * 6 5 4 31 31 H 1.09000 * 109.47451 * 60.00726 * 6 5 4 32 32 H 0.96990 * 120.00137 * 180.02562 * 10 9 7 33 33 H 1.08000 * 120.00616 * 359.70324 * 16 15 2 34 34 H 1.08001 * 119.99556 * 179.97438 * 17 16 15 35 35 H 1.09011 * 109.47292 * 59.99693 * 20 19 18 36 36 H 1.09000 * 109.47498 * 179.97438 * 20 19 18 37 37 H 1.09007 * 109.46947 * 300.00426 * 20 19 18 38 38 H 1.08008 * 119.99453 * 180.11401 * 22 18 17 39 39 H 1.08001 * 120.00350 * 359.97438 * 23 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 2.0826 0.2225 2.3469 6 6 2.5952 -0.5333 3.5743 7 6 2.6590 0.4052 4.7517 8 1 2.3639 1.4376 4.6359 9 6 3.0952 -0.0539 5.9765 10 7 3.4550 -1.3110 6.1174 11 14 3.1736 1.1093 7.4360 12 1 1.8796 1.0783 8.1638 13 1 4.2652 0.6851 8.3490 14 1 3.4383 2.4893 6.9556 15 6 2.0323 -0.7103 -1.2305 16 6 2.4586 0.0197 -2.3243 17 6 2.9199 -0.6319 -3.4529 18 6 2.9530 -2.0134 -3.4884 19 16 3.5403 -2.8439 -4.9272 20 6 2.0348 -3.0623 -5.9153 21 8 4.3727 -1.8696 -5.5413 22 6 2.5280 -2.7433 -2.3941 23 6 2.0672 -2.0917 -1.2653 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.4497 -1.4979 1.4100 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5525 30 1 1.9185 -1.3567 3.8028 31 1 3.5905 -0.9273 3.3690 32 1 3.7615 -1.6340 6.9791 33 1 2.4273 1.0989 -2.2988 34 1 3.2526 -0.0616 -4.3076 35 1 1.6037 -2.0869 -6.1412 36 1 2.2817 -3.5742 -6.8454 37 1 1.3143 -3.6566 -5.3532 38 1 2.5556 -3.8226 -2.4212 39 1 1.7349 -2.6620 -0.4105 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271776017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:23 Heat of formation + Delta-G solvation = -49.679154 kcal Electronic energy + Delta-G solvation = -18935.378399 eV Core-core repulsion = 15967.902627 eV Total energy + Delta-G solvation = -2967.475772 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.48315 -37.91911 -36.84302 -35.38738 -33.36283 -31.90236 -30.88505 -29.60941 -29.28996 -26.18362 -24.66511 -23.72492 -22.38049 -21.55212 -19.05038 -18.51396 -17.71075 -16.81838 -16.58479 -16.30056 -16.07991 -15.75861 -15.37020 -15.22223 -14.66306 -14.51410 -14.28259 -14.15098 -14.13021 -13.78296 -13.47624 -13.33791 -13.05693 -12.86153 -12.83154 -12.65979 -12.45673 -12.15259 -11.99099 -11.87595 -11.43199 -11.29436 -11.17448 -10.56312 -9.99247 -9.86239 -9.35056 -9.23227 -8.20447 -6.31519 -0.01256 0.46592 1.01658 1.40108 1.41462 1.52431 1.83780 2.40092 2.68151 3.03108 3.13109 3.30205 3.79260 3.89829 4.07813 4.16559 4.26341 4.35105 4.49555 4.51061 4.51805 4.59302 4.65451 4.74445 4.86765 4.92138 5.05774 5.09980 5.13824 5.19308 5.32895 5.36889 5.44339 5.61446 5.69490 5.80551 6.03302 6.13918 6.26114 6.53877 6.85636 7.37614 8.91605 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.035629 B = 0.002779 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.682382 B =10074.481981 C =10327.967056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 H 0.075 0.925 4 N -0.686 5.686 5 C 0.086 3.914 6 C 0.034 3.966 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.930 5.930 11 Si 0.965 3.035 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.266 1.266 15 C -0.036 4.036 16 C -0.148 4.148 17 C -0.079 4.079 18 C -0.476 4.476 19 S 1.397 4.603 20 C -0.495 4.495 21 O -0.931 6.931 22 C -0.034 4.034 23 C -0.127 4.127 24 H 0.069 0.931 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.344 0.656 28 H 0.051 0.949 29 H 0.024 0.976 30 H -0.004 1.004 31 H -0.007 1.007 32 H 0.264 0.736 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.186 0.814 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -7.690 -21.935 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.004 3.996 3 H 0.093 0.907 4 N -0.317 5.317 5 C -0.043 4.043 6 C -0.004 4.004 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.570 5.570 11 Si 0.789 3.211 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.190 1.190 15 C -0.036 4.036 16 C -0.168 4.168 17 C -0.098 4.098 18 C -0.572 4.572 19 S 1.595 4.405 20 C -0.653 4.653 21 O -0.927 6.927 22 C -0.053 4.053 23 C -0.147 4.147 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.014 0.986 31 H 0.012 0.988 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.079 0.921 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.203 0.797 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.744 -7.971 -22.198 24.058 hybrid contribution -1.711 3.009 0.822 3.557 sum -6.455 -4.962 -21.376 22.874 Atomic orbital electron populations 1.22377 0.94602 1.03133 1.02515 1.20542 0.94002 0.96962 0.88065 0.90655 1.60563 1.57418 1.10048 1.03655 1.21782 0.98036 0.94760 0.89712 1.18894 0.94955 0.94852 0.91674 1.21609 1.44114 0.96998 0.95679 0.92354 1.25938 0.94758 0.96834 1.02079 1.70092 1.45150 1.16305 1.25414 0.85456 0.78034 0.79035 0.78563 1.19595 1.20713 1.19016 1.20093 0.94981 0.95015 0.93548 1.21159 1.01473 1.00253 0.93898 1.21042 0.96015 0.95067 0.97645 1.27848 1.12889 1.01035 1.15415 1.68571 0.82196 1.07025 0.82659 1.27745 1.17852 1.06813 1.12893 1.92972 1.59022 1.64442 1.76250 1.21355 0.92072 1.01913 0.89969 1.21365 1.00431 0.93691 0.99163 0.91200 0.92591 0.91081 0.83728 0.93034 0.95772 0.98573 0.98846 0.92701 0.85938 0.87459 0.92115 0.86008 0.84050 0.79719 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 9.14 71.98 0.66 -3.21 16 2 C 0.11 3.18 2.79 44.17 0.12 3.31 16 3 H 0.08 2.22 7.66 -2.38 -0.02 2.20 16 4 N -0.69 -23.28 5.70 -495.46 -2.83 -26.10 16 5 C 0.09 3.55 5.42 86.30 0.47 4.02 16 6 C 0.03 1.78 5.23 29.85 0.16 1.93 16 7 C -0.55 -31.08 9.11 25.60 0.23 -30.85 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.00 0.12 5.46 84.65 0.46 0.58 16 10 N -0.93 -56.38 13.29 21.45 0.28 -56.10 16 11 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 15 C -0.04 -0.93 4.96 -19.87 -0.10 -1.03 16 16 C -0.15 -3.95 9.67 22.27 0.22 -3.74 16 17 C -0.08 -2.07 9.44 22.27 0.21 -1.86 16 18 C -0.48 -9.47 5.61 22.27 0.12 -9.35 16 19 S 1.40 19.21 14.19 -56.49 -0.80 18.41 16 20 C -0.50 -4.82 10.70 113.37 1.21 -3.61 16 21 O -0.93 -27.06 16.90 -148.98 -2.52 -29.57 16 22 C -0.03 -0.57 9.75 22.27 0.22 -0.35 16 23 C -0.13 -2.83 9.32 22.27 0.21 -2.62 16 24 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 25 H 0.06 1.38 7.45 -2.39 -0.02 1.36 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.34 10.86 7.82 -89.69 -0.70 10.16 16 28 H 0.05 2.19 8.06 -2.39 -0.02 2.17 16 29 H 0.02 0.96 7.44 -2.38 -0.02 0.94 16 30 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 32 H 0.26 15.01 8.31 -92.72 -0.77 14.24 16 33 H 0.12 3.03 8.04 -2.91 -0.02 3.01 16 34 H 0.11 3.06 7.45 -2.91 -0.02 3.04 16 35 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.14 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.19 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.14 2.80 7.25 -2.91 -0.02 2.78 16 Total: -1.00 -80.20 339.80 0.68 -79.52 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.33 Total: 14.39 kcal Atomic # 6 Polarization: -50.96 SS G_CDS: 4.19 Total: -46.77 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -2.54 Total: -82.20 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -2.52 Total: -29.57 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 19.21 SS G_CDS: -0.80 Total: 18.41 kcal Total: -80.20 0.68 -79.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271776017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.839 kcal (2) G-P(sol) polarization free energy of solvation -80.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds