Wall clock time and date at job start Tue Mar 31 2020 06:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 113.99705 * 2 1 4 4 H 1.08991 * 109.47680 * 29.99573 * 3 2 1 5 5 C 1.50708 * 109.46871 * 269.99433 * 3 2 1 6 6 C 1.38242 * 119.97061 * 145.00275 * 5 3 2 7 7 C 1.38205 * 120.02001 * 180.02562 * 6 5 3 8 8 C 1.38455 * 119.97502 * 0.02562 * 7 6 5 9 9 F 1.35106 * 120.02277 * 180.02562 * 8 7 6 10 10 C 1.38458 * 119.95220 * 359.97438 * 8 7 6 11 11 C 1.38198 * 119.97324 * 0.02562 * 10 8 7 12 12 C 1.53007 * 109.47096 * 150.00113 * 3 2 1 13 13 H 1.09001 * 109.46965 * 184.99986 * 12 3 2 14 14 C 1.52999 * 109.46523 * 304.99365 * 12 3 2 15 15 N 1.46492 * 109.47384 * 64.99736 * 12 3 2 16 16 C 1.34772 * 120.00003 * 155.00653 * 15 12 3 17 17 O 1.21689 * 119.99944 * 359.97438 * 16 15 12 18 18 C 1.46378 * 119.99972 * 179.97438 * 16 15 12 19 19 H 1.08001 * 120.00312 * 359.97438 * 18 16 15 20 20 C 1.40048 * 120.00078 * 179.97438 * 18 16 15 21 21 N 1.30683 * 119.99927 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00437 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46808 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46987 * 120.00172 * 22 20 18 25 25 H 1.48503 * 109.47555 * 240.00688 * 22 20 18 26 26 H 1.08999 * 109.47053 * 60.00641 * 1 2 3 27 27 H 1.08999 * 109.47173 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47962 * 300.00575 * 1 2 3 29 29 H 1.07994 * 119.98958 * 0.27574 * 6 5 3 30 30 H 1.08001 * 120.00504 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.01541 * 179.97438 * 10 8 7 32 32 H 1.07999 * 119.98646 * 179.97438 * 11 10 8 33 33 H 1.08996 * 109.47612 * 60.00321 * 14 12 3 34 34 H 1.09006 * 109.46855 * 180.02562 * 14 12 3 35 35 H 1.08999 * 109.47713 * 300.00027 * 14 12 3 36 36 H 0.97003 * 120.00219 * 334.99189 * 15 12 3 37 37 H 0.96995 * 120.00106 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 2.2145 1.7643 -1.4209 6 6 2.0568 3.0989 -1.7451 7 6 2.2435 3.5207 -3.0479 8 6 2.5880 2.6060 -4.0285 9 9 2.7713 3.0174 -5.3023 10 6 2.7457 1.2696 -3.7026 11 6 2.5585 0.8501 -2.3992 12 6 3.3588 1.2634 0.7213 13 1 3.7607 2.2736 0.7995 14 6 3.1694 0.6799 2.1229 15 7 4.2912 0.4241 -0.0353 16 6 5.6198 0.6164 0.0839 17 8 6.0449 1.4876 0.8195 18 6 6.5514 -0.2226 -0.6716 19 1 6.1742 -0.9960 -1.3242 20 6 7.9320 -0.0223 -0.5483 21 7 8.3886 0.9132 0.2417 22 14 9.1210 -1.0934 -1.5118 23 1 8.3568 -2.0716 -2.3270 24 1 9.9431 -0.2394 -2.4063 25 1 10.0082 -1.8205 -0.5686 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3635 0.5139 0.8899 29 1 1.7916 3.8128 -0.9794 30 1 2.1206 4.5635 -3.3009 31 1 3.0140 0.5552 -4.4667 32 1 2.6810 -0.1923 -2.1448 33 1 2.7675 -0.3302 2.0448 34 1 4.1302 0.6503 2.6370 35 1 2.4758 1.3044 2.6858 36 1 3.9523 -0.2703 -0.6218 37 1 9.3447 1.0517 0.3274 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274806992.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:58 Heat of formation + Delta-G solvation = -107.909704 kcal Electronic energy + Delta-G solvation = -22371.804038 eV Core-core repulsion = 18835.590024 eV Total energy + Delta-G solvation = -3536.214014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.74867 -39.75609 -37.67099 -36.91141 -34.00532 -32.33553 -31.14274 -30.77709 -29.60100 -26.94282 -26.03548 -25.22327 -22.89990 -21.92542 -20.77491 -19.25300 -17.59783 -17.34415 -16.65115 -16.33057 -15.54767 -15.47985 -15.36293 -14.99976 -14.61299 -14.01770 -13.87943 -13.38245 -13.35929 -13.13287 -12.96175 -12.51556 -12.30704 -12.16624 -11.67056 -11.55405 -11.47373 -11.11186 -10.92894 -10.89123 -10.70856 -10.49481 -10.35226 -10.13177 -9.62059 -8.93733 -8.81229 -8.40088 -7.55018 -7.41641 -6.13528 -4.57723 1.27016 1.40914 3.15877 3.24165 3.28433 3.68284 3.83837 4.14975 4.40306 4.63827 4.74779 4.85861 4.88315 5.02264 5.20399 5.33678 5.42219 5.44676 5.47335 5.59798 5.65605 5.80390 6.02000 6.02690 6.06792 6.21540 6.25098 6.28659 6.40684 6.58720 6.62417 6.92073 7.03820 7.25934 7.48683 8.01724 8.18708 8.40401 9.08460 9.62426 10.65870 10.85578 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013325 B = 0.006447 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.805253 B = 4341.797390 C = 5618.584485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.124 3.876 4 H 0.074 0.926 5 C -0.109 4.109 6 C -0.085 4.085 7 C -0.157 4.157 8 C 0.093 3.907 9 F -0.145 7.145 10 C -0.152 4.152 11 C -0.052 4.052 12 C 0.163 3.837 13 H 0.086 0.914 14 C -0.155 4.155 15 N -0.754 5.754 16 C 0.558 3.442 17 O -0.582 6.582 18 C -0.543 4.543 19 H 0.066 0.934 20 C 0.088 3.912 21 N -0.769 5.769 22 Si 0.904 3.096 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.038 0.962 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.134 0.866 32 H 0.137 0.863 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.382 0.618 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.837 0.713 -4.016 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.288 6.288 3 C 0.065 3.935 4 H 0.092 0.908 5 C -0.109 4.109 6 C -0.103 4.103 7 C -0.176 4.176 8 C 0.074 3.926 9 F -0.124 7.124 10 C -0.171 4.171 11 C -0.070 4.070 12 C 0.056 3.944 13 H 0.104 0.896 14 C -0.214 4.214 15 N -0.409 5.409 16 C 0.362 3.638 17 O -0.465 6.465 18 C -0.580 4.580 19 H 0.084 0.916 20 C -0.131 4.131 21 N -0.398 5.398 22 Si 0.729 3.271 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.214 0.786 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.238 1.307 -3.438 15.676 hybrid contribution 0.348 -0.496 -1.052 1.215 sum -14.890 0.811 -4.490 15.573 Atomic orbital electron populations 1.22771 0.81650 1.02494 0.99712 1.87964 1.19081 1.27021 1.94711 1.21443 0.95970 0.84835 0.91236 0.90804 1.20352 1.00527 0.93735 0.96307 1.20798 0.98841 0.95221 0.95460 1.20998 1.04056 0.99544 0.92966 1.17724 1.02507 0.93403 0.78967 1.91473 1.93032 1.91075 1.36799 1.21144 1.03501 0.94237 0.98236 1.20813 0.94829 1.00448 0.90955 1.20586 0.86054 0.97225 0.90553 0.89636 1.22106 1.01738 1.00864 0.96678 1.46119 1.06291 1.38779 1.49734 1.18175 0.79519 0.84035 0.82098 1.90588 1.76777 1.36577 1.42584 1.20903 0.90448 1.18799 1.27879 0.91570 1.25684 0.98834 0.94461 0.94113 1.70034 1.13810 1.26322 1.29631 0.86379 0.80423 0.80410 0.79925 1.18796 1.20245 1.20213 0.94304 0.89807 0.94172 0.85308 0.85077 0.84842 0.84566 0.92320 0.91771 0.93746 0.78552 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.81 101.05 1.09 1.39 16 2 O -0.37 -5.03 8.34 -35.23 -0.29 -5.32 16 3 C 0.12 1.76 2.16 -27.88 -0.06 1.70 16 4 H 0.07 0.88 7.69 -51.93 -0.40 0.48 16 5 C -0.11 -1.60 4.73 -104.61 -0.49 -2.09 16 6 C -0.09 -1.15 9.68 -39.59 -0.38 -1.53 16 7 C -0.16 -2.13 10.03 -39.51 -0.40 -2.53 16 8 C 0.09 1.38 7.30 -39.42 -0.29 1.09 16 9 F -0.15 -2.18 17.27 2.25 0.04 -2.14 16 10 C -0.15 -2.23 10.03 -39.51 -0.40 -2.63 16 11 C -0.05 -0.78 8.19 -39.59 -0.32 -1.11 16 12 C 0.16 3.03 2.47 -67.93 -0.17 2.86 16 13 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 14 C -0.16 -2.71 9.29 37.16 0.35 -2.37 16 15 N -0.75 -16.60 4.28 -55.22 -0.24 -16.84 16 16 C 0.56 15.70 7.71 -12.99 -0.10 15.60 16 17 O -0.58 -18.59 14.68 5.20 0.08 -18.51 16 18 C -0.54 -15.42 9.54 -35.63 -0.34 -15.76 16 19 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 20 C 0.09 2.49 5.50 -17.36 -0.10 2.40 16 21 N -0.77 -23.24 11.83 55.55 0.66 -22.59 16 22 Si 0.90 20.46 29.56 -169.99 -5.02 15.44 16 23 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.13 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.14 1.99 6.56 -52.49 -0.34 1.65 16 33 H 0.06 0.99 7.56 -51.93 -0.39 0.60 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.38 7.75 6.45 -40.82 -0.26 7.49 16 37 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -34.16 321.52 -6.26 -40.42 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.72 Total: 7.66 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.61 Total: -2.97 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.42 Total: -39.43 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.22 Total: -23.84 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.16 -6.26 -40.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274806992.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.486 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds