Wall clock time and date at job start Tue Mar 31 2020 06:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00199 * 2 1 4 4 H 1.09001 * 109.47064 * 13.43148 * 3 2 1 5 5 C 1.50702 * 109.46907 * 133.43002 * 3 2 1 6 6 C 1.38244 * 119.97321 * 39.72783 * 5 3 2 7 7 C 1.38201 * 120.02049 * 179.76913 * 6 5 3 8 8 C 1.38457 * 119.97398 * 0.50127 * 7 6 5 9 9 F 1.35109 * 120.02315 * 179.77105 * 8 7 6 10 10 C 1.38455 * 119.95134 * 359.75370 * 8 7 6 11 11 C 1.38197 * 119.97479 * 359.97438 * 10 8 7 12 12 C 1.53003 * 109.47415 * 253.43373 * 3 2 1 13 13 H 1.09000 * 109.47146 * 180.76399 * 12 3 2 14 14 C 1.53001 * 109.47355 * 60.75621 * 12 3 2 15 15 N 1.46504 * 109.46493 * 300.75855 * 12 3 2 16 16 C 1.34782 * 119.99441 * 204.99717 * 15 12 3 17 17 O 1.21687 * 120.00177 * 0.02562 * 16 15 12 18 18 C 1.46376 * 119.99622 * 180.02562 * 16 15 12 19 19 H 1.08001 * 119.99984 * 0.02562 * 18 16 15 20 20 C 1.40045 * 119.99918 * 180.02562 * 18 16 15 21 21 N 1.30676 * 120.00261 * 0.02562 * 20 18 16 22 22 Si 1.86798 * 120.00232 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47122 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46860 * 119.99900 * 22 20 18 25 25 H 1.48493 * 109.47644 * 240.00049 * 22 20 18 26 26 H 1.08997 * 109.47415 * 55.41793 * 1 2 3 27 27 H 1.08999 * 109.46919 * 175.41617 * 1 2 3 28 28 H 1.08999 * 109.46724 * 295.41578 * 1 2 3 29 29 H 1.07996 * 119.98560 * 0.02562 * 6 5 3 30 30 H 1.07998 * 120.01065 * 180.26118 * 7 6 5 31 31 H 1.08004 * 120.01404 * 179.97438 * 10 8 7 32 32 H 1.08002 * 119.98936 * 180.02562 * 11 10 8 33 33 H 1.08998 * 109.47261 * 305.36500 * 14 12 3 34 34 H 1.08998 * 109.46628 * 65.36023 * 14 12 3 35 35 H 1.08996 * 109.47146 * 185.35867 * 14 12 3 36 36 H 0.96994 * 120.00645 * 25.00312 * 15 12 3 37 37 H 0.96995 * 120.00259 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.2449 2.0439 0.2387 5 6 3.1069 1.3669 1.0318 6 6 3.9569 0.2899 1.2015 7 6 4.9659 0.3471 2.1441 8 6 5.1187 1.4796 2.9259 9 9 6.1019 1.5348 3.8510 10 6 4.2636 2.5556 2.7587 11 6 3.2588 2.4983 1.8116 12 6 2.5935 1.6041 -1.3826 13 1 3.0488 2.5944 -1.3787 14 6 1.4768 1.5602 -2.4276 15 7 3.6094 0.6008 -1.7111 16 6 4.5917 0.8976 -2.5849 17 8 4.6350 1.9990 -3.1006 18 6 5.6063 -0.1049 -2.9135 19 1 5.5676 -1.0825 -2.4561 20 6 6.6273 0.2036 -3.8211 21 7 6.6745 1.3866 -4.3742 22 14 7.9227 -1.0754 -4.2400 23 1 7.6475 -2.3242 -3.4851 24 1 7.8844 -1.3598 -5.6971 25 1 9.2654 -0.5594 -3.8714 26 1 -0.3634 0.5833 -0.8461 27 1 -0.3633 -1.0244 -0.0821 28 1 -0.3633 0.4411 0.9282 29 1 3.8349 -0.5948 0.5943 30 1 5.6324 -0.4927 2.2736 31 1 4.3817 3.4393 3.3683 32 1 2.5919 3.3377 1.6807 33 1 0.9592 0.6029 -2.3662 34 1 0.7701 2.3681 -2.2381 35 1 1.9055 1.6783 -3.4227 36 1 3.5750 -0.2769 -1.2998 37 1 7.3818 1.6004 -5.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274806997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:02 Heat of formation + Delta-G solvation = -106.964595 kcal Electronic energy + Delta-G solvation = -22340.466195 eV Core-core repulsion = 18804.293163 eV Total energy + Delta-G solvation = -3536.173031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -48.73520 -39.72107 -37.79336 -36.86892 -33.88900 -32.33699 -31.16725 -30.87088 -29.59357 -27.10029 -26.02541 -25.07789 -22.87101 -21.93568 -20.79381 -19.29818 -17.57097 -17.36512 -16.62903 -16.24834 -15.56517 -15.48372 -15.38820 -15.02505 -14.63677 -14.01470 -13.90799 -13.36342 -13.28162 -13.09608 -12.95927 -12.51431 -12.34354 -12.13388 -11.69286 -11.56773 -11.38516 -11.17386 -11.03479 -10.87371 -10.78450 -10.57051 -10.40276 -10.14049 -9.42442 -8.91604 -8.81862 -8.39044 -7.55496 -7.41690 -6.14082 -4.58453 1.28241 1.43453 3.15438 3.23799 3.28027 3.65687 3.86145 4.14907 4.41357 4.63106 4.80830 4.87975 4.88397 5.04403 5.20908 5.30802 5.42232 5.45744 5.47789 5.61174 5.68189 5.79311 5.93872 6.02789 6.07980 6.16703 6.22679 6.26942 6.43033 6.56006 6.61978 6.85223 7.05247 7.27022 7.48069 8.01684 8.18883 8.39928 9.07839 9.62434 10.65361 10.85117 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.006447 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.271295 B = 4342.363147 C = 5702.901834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.124 3.876 4 H 0.075 0.925 5 C -0.092 4.092 6 C -0.045 4.045 7 C -0.153 4.153 8 C 0.093 3.907 9 F -0.145 7.145 10 C -0.158 4.158 11 C -0.086 4.086 12 C 0.145 3.855 13 H 0.083 0.917 14 C -0.160 4.160 15 N -0.752 5.752 16 C 0.557 3.443 17 O -0.582 6.582 18 C -0.543 4.543 19 H 0.066 0.934 20 C 0.088 3.912 21 N -0.769 5.769 22 Si 0.904 3.096 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.277 1.277 26 H 0.046 0.954 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.129 0.871 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.382 0.618 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.941 -1.335 12.239 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C 0.066 3.934 4 H 0.093 0.907 5 C -0.092 4.092 6 C -0.063 4.063 7 C -0.172 4.172 8 C 0.074 3.926 9 F -0.124 7.124 10 C -0.177 4.177 11 C -0.104 4.104 12 C 0.038 3.962 13 H 0.101 0.899 14 C -0.219 4.219 15 N -0.408 5.408 16 C 0.361 3.639 17 O -0.465 6.465 18 C -0.581 4.581 19 H 0.085 0.915 20 C -0.131 4.131 21 N -0.398 5.398 22 Si 0.729 3.271 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.202 1.202 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.215 0.785 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.664 -0.551 11.762 15.233 hybrid contribution 0.675 -0.764 0.085 1.023 sum -8.989 -1.314 11.846 14.929 Atomic orbital electron populations 1.22869 0.81308 1.02684 0.99808 1.87896 1.19335 1.27050 1.94945 1.21331 0.92838 0.85444 0.93834 0.90667 1.19866 0.97913 0.94673 0.96749 1.20848 0.91943 0.98651 0.94902 1.21168 1.00541 0.97905 0.97589 1.17728 0.88349 0.96123 0.90371 1.91473 1.60149 1.96858 1.63900 1.20970 0.96920 0.98343 1.01489 1.20769 0.97722 0.97516 0.94369 1.20847 0.89736 0.95389 0.90263 0.89913 1.22224 0.98147 1.00312 1.01229 1.46087 1.29295 1.15117 1.50275 1.18188 0.79984 0.88197 0.77500 1.90587 1.76522 1.24608 1.54798 1.20905 1.10517 0.99488 1.27151 0.91541 1.25683 0.97670 0.95250 0.94496 1.70031 1.28844 1.19501 1.21410 0.86378 0.80656 0.81471 0.78625 1.18782 1.20238 1.20232 0.93555 0.89811 0.94440 0.84510 0.84774 0.85041 0.85300 0.92752 0.93651 0.91468 0.78500 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.23 101.05 1.03 1.34 16 2 O -0.37 -5.16 8.64 -35.23 -0.30 -5.47 16 3 C 0.12 1.78 2.26 -27.88 -0.06 1.72 16 4 H 0.08 0.89 7.51 -51.93 -0.39 0.50 16 5 C -0.09 -1.37 4.89 -104.62 -0.51 -1.89 16 6 C -0.05 -0.71 8.38 -39.59 -0.33 -1.04 16 7 C -0.15 -2.30 10.03 -39.51 -0.40 -2.70 16 8 C 0.09 1.40 7.30 -39.42 -0.29 1.11 16 9 F -0.15 -2.18 17.27 2.25 0.04 -2.15 16 10 C -0.16 -2.14 10.03 -39.52 -0.40 -2.54 16 11 C -0.09 -1.15 9.67 -39.59 -0.38 -1.53 16 12 C 0.14 2.68 2.39 -67.93 -0.16 2.51 16 13 H 0.08 1.74 7.58 -51.93 -0.39 1.35 16 14 C -0.16 -2.73 8.74 37.16 0.32 -2.40 16 15 N -0.75 -16.48 4.19 -55.21 -0.23 -16.71 16 16 C 0.56 15.63 7.71 -12.98 -0.10 15.53 16 17 O -0.58 -18.57 14.68 5.20 0.08 -18.50 16 18 C -0.54 -15.36 9.54 -35.63 -0.34 -15.70 16 19 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 20 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 21 N -0.77 -23.19 11.83 55.55 0.66 -22.54 16 22 Si 0.90 20.39 29.56 -169.99 -5.02 15.37 16 23 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H 0.05 0.45 6.56 -51.93 -0.34 0.11 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.14 2.12 6.36 -52.49 -0.33 1.79 16 30 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.13 1.38 8.04 -52.49 -0.42 0.95 16 33 H 0.05 0.85 6.32 -51.93 -0.33 0.52 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.38 7.73 6.38 -40.82 -0.26 7.47 16 37 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 LS Contribution 317.71 15.07 4.79 4.79 Total: -1.00 -34.18 317.71 -6.26 -40.44 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -4.55 Total: 7.96 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.71 Total: -3.19 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.43 Total: -39.25 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.23 Total: -23.96 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.18 -6.26 -40.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274806997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.526 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds