Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.53001 * 109.46820 * 240.00091 * 2 1 3 5 5 O 1.42900 * 109.47202 * 120.00480 * 2 1 3 6 6 C 1.35914 * 117.00008 * 55.22273 * 5 2 1 7 7 C 1.38506 * 120.08639 * 5.20907 * 6 5 2 8 8 C 1.38458 * 120.00544 * 179.97438 * 7 6 5 9 9 F 1.35097 * 119.90895 * 179.97438 * 8 7 6 10 10 C 1.38662 * 120.17578 * 359.97438 * 8 7 6 11 11 C 1.38053 * 120.17067 * 359.74827 * 10 8 7 12 12 C 1.38971 * 119.98916 * 0.50575 * 11 10 8 13 13 N 1.39566 * 120.08254 * 179.76635 * 12 11 10 14 14 C 1.34771 * 119.99942 * 34.93859 * 13 12 11 15 15 O 1.21789 * 120.00051 * 355.11583 * 14 13 12 16 16 C 1.41739 * 120.00298 * 175.12018 * 14 13 12 17 17 H 1.08001 * 119.99285 * 359.97438 * 16 14 13 18 18 C 1.40136 * 120.00511 * 179.72164 * 16 14 13 19 19 N 1.30628 * 119.99667 * 0.27300 * 18 16 14 20 20 Si 1.86793 * 120.00283 * 180.27257 * 18 16 14 21 21 H 1.48500 * 109.47244 * 90.00029 * 20 18 16 22 22 H 1.48497 * 109.47507 * 209.99829 * 20 18 16 23 23 H 1.48501 * 109.47407 * 330.00253 * 20 18 16 24 24 H 1.09002 * 109.46886 * 305.37391 * 1 2 3 25 25 H 1.09000 * 109.47128 * 65.37107 * 1 2 3 26 26 H 1.08997 * 109.46872 * 185.37270 * 1 2 3 27 27 H 1.08996 * 109.46916 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47102 * 300.00772 * 3 2 1 29 29 H 1.09004 * 109.46605 * 60.00090 * 3 2 1 30 30 H 1.08997 * 109.47469 * 304.75997 * 4 2 1 31 31 H 1.08998 * 109.47120 * 64.76256 * 4 2 1 32 32 H 1.09000 * 109.47114 * 184.75893 * 4 2 1 33 33 H 1.08000 * 119.99169 * 359.95451 * 7 6 5 34 34 H 1.07998 * 119.90911 * 180.02562 * 10 8 7 35 35 H 1.08001 * 120.00039 * 180.24971 * 11 10 8 36 36 H 0.97001 * 120.00075 * 214.92812 * 13 12 11 37 37 H 0.96998 * 120.00151 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5608 -1.9412 1.3725 7 6 0.7716 -2.5631 0.4192 8 6 0.3191 -3.8545 0.6303 9 9 -0.4510 -4.4590 -0.3006 10 6 0.6542 -4.5289 1.7946 11 6 1.4452 -3.9180 2.7470 12 6 1.8988 -2.6201 2.5447 13 7 2.6945 -1.9990 3.5085 14 6 3.5820 -2.7234 4.2185 15 8 3.6279 -3.9328 4.0831 16 6 4.4619 -2.0777 5.1229 17 1 4.4214 -1.0051 5.2426 18 6 5.3807 -2.8315 5.8654 19 7 5.4299 -4.1287 5.7202 20 14 6.5351 -1.9813 7.0628 21 1 5.8936 -1.9061 8.4000 22 1 7.8000 -2.7526 7.1634 23 1 6.8293 -0.6091 6.5772 24 1 -0.3633 0.5949 0.8380 25 1 -0.3633 0.4283 -0.9342 26 1 -0.3633 -1.0231 0.0962 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6087 -1.7213 -1.2930 31 1 1.7479 -0.1605 -2.1372 32 1 3.1266 -0.7957 -1.2077 33 1 0.5090 -2.0404 -0.4887 34 1 0.2992 -5.5362 1.9546 35 1 1.7079 -4.4473 3.6510 36 1 2.6089 -1.0459 3.6673 37 1 6.0656 -4.6506 6.2344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274844651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -76.859867 kcal Electronic energy + Delta-G solvation = -22376.487424 eV Core-core repulsion = 18841.619832 eV Total energy + Delta-G solvation = -3534.867592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.44709 -40.56576 -38.34308 -36.52338 -34.09060 -33.21545 -32.30266 -30.38036 -28.47321 -27.47599 -27.25534 -26.22299 -22.98600 -22.05442 -20.27821 -19.95030 -17.82659 -17.33746 -16.76832 -16.15031 -15.59213 -15.37471 -15.16378 -15.02848 -14.58649 -14.31219 -13.96136 -13.55113 -13.13899 -12.92819 -12.74092 -12.61693 -12.33870 -12.06340 -11.95331 -11.89076 -11.55706 -11.35754 -11.30314 -11.07074 -10.99041 -10.61891 -10.43657 -10.32260 -10.15725 -9.22590 -8.82851 -8.14484 -7.67476 -6.87843 -6.36702 -4.88697 1.71293 1.78736 3.05779 3.13379 3.16963 3.36354 3.97807 4.06919 4.44046 4.59368 4.70374 4.74806 4.77619 4.88160 5.11280 5.38285 5.42782 5.44808 5.47768 5.62116 5.68897 5.71000 5.71498 5.82523 5.98738 6.14723 6.16126 6.18157 6.35103 6.48084 6.78894 6.88688 7.23004 7.27982 7.63401 7.88473 8.05048 8.23024 8.81400 9.31046 10.38891 10.59307 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.005314 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.130561 B = 5268.160014 C = 6488.987564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.109 3.891 3 C -0.137 4.137 4 C -0.197 4.197 5 O -0.298 6.298 6 C 0.104 3.896 7 C -0.244 4.244 8 C 0.076 3.924 9 F -0.151 7.151 10 C -0.165 4.165 11 C -0.074 4.074 12 C 0.161 3.839 13 N -0.691 5.691 14 C 0.545 3.455 15 O -0.570 6.570 16 C -0.536 4.536 17 H 0.070 0.930 18 C 0.088 3.912 19 N -0.748 5.748 20 Si 0.912 3.088 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.263 1.263 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.160 0.840 34 H 0.129 0.871 35 H 0.160 0.840 36 H 0.395 0.605 37 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.026 7.975 -9.792 14.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.071 3.929 3 C -0.194 4.194 4 C -0.254 4.254 5 O -0.212 6.212 6 C 0.056 3.944 7 C -0.263 4.263 8 C 0.055 3.945 9 F -0.130 7.130 10 C -0.185 4.185 11 C -0.095 4.095 12 C 0.061 3.939 13 N -0.334 5.334 14 C 0.355 3.645 15 O -0.454 6.454 16 C -0.571 4.571 17 H 0.088 0.912 18 C -0.135 4.135 19 N -0.375 5.375 20 Si 0.736 3.264 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.177 0.823 34 H 0.147 0.853 35 H 0.177 0.823 36 H 0.229 0.771 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.695 7.062 -9.677 14.238 hybrid contribution 0.316 0.758 0.197 0.844 sum -7.379 7.819 -9.480 14.334 Atomic orbital electron populations 1.22958 0.95264 1.05077 1.02948 1.21714 0.93663 0.92958 0.84596 1.21765 1.02378 0.92608 1.02627 1.22844 1.03113 1.02264 0.97165 1.86164 1.66766 1.24150 1.44111 1.18499 0.98042 0.85344 0.92534 1.21539 1.06360 0.95885 1.02522 1.17315 0.96874 0.91873 0.88405 1.91416 1.73400 1.83430 1.64741 1.20958 1.02606 1.00998 0.93923 1.21272 0.93825 0.93792 1.00646 1.17430 0.94987 0.93454 0.88034 1.43949 1.39240 1.12052 1.38205 1.17051 0.79718 0.86897 0.80876 1.90624 1.72113 1.13983 1.68687 1.20027 1.18634 0.95078 1.23368 0.91154 1.25754 0.96800 0.94492 0.96407 1.70006 1.29113 1.06051 1.32368 0.86287 0.79418 0.80147 0.80502 1.19497 1.20260 1.18688 0.91505 0.91308 0.89312 0.91405 0.90837 0.91521 0.90129 0.91360 0.91209 0.82335 0.85339 0.82283 0.77113 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.26 8.06 37.16 0.30 -1.96 16 2 C 0.11 1.35 1.11 -90.62 -0.10 1.25 16 3 C -0.14 -1.40 8.84 37.16 0.33 -1.07 16 4 C -0.20 -2.28 8.26 37.16 0.31 -1.98 16 5 O -0.30 -4.97 9.35 -19.47 -0.18 -5.15 16 6 C 0.10 1.90 6.17 -38.97 -0.24 1.66 16 7 C -0.24 -3.96 6.14 -39.40 -0.24 -4.20 16 8 C 0.08 1.30 7.30 -39.34 -0.29 1.01 16 9 F -0.15 -2.46 17.26 2.25 0.04 -2.42 16 10 C -0.17 -3.00 10.02 -39.49 -0.40 -3.39 16 11 C -0.07 -1.57 8.69 -39.38 -0.34 -1.91 16 12 C 0.16 3.43 6.32 -83.55 -0.53 2.90 16 13 N -0.69 -15.89 5.16 -12.30 -0.06 -15.95 16 14 C 0.55 15.08 7.42 -14.93 -0.11 14.97 16 15 O -0.57 -17.49 12.29 5.11 0.06 -17.43 16 16 C -0.54 -14.58 9.31 -37.53 -0.35 -14.93 16 17 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 18 C 0.09 2.36 5.50 -17.35 -0.10 2.27 16 19 N -0.75 -21.41 11.73 55.55 0.65 -20.76 16 20 Si 0.91 19.30 29.56 -169.99 -5.02 14.28 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 1.08 4.24 -51.93 -0.22 0.86 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.00 4.57 -51.93 -0.24 0.76 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.16 2.17 3.07 -52.49 -0.16 2.01 16 34 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.16 3.76 6.20 -52.49 -0.33 3.44 16 36 H 0.40 8.15 8.53 -40.82 -0.35 7.80 16 37 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 307.59 15.07 4.64 4.64 Total: -1.00 -31.49 307.59 -5.86 -37.35 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -4.22 Total: 10.84 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.76 Total: -5.39 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.59 Total: -36.71 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.12 Total: -22.58 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.04 Total: -2.42 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.49 -5.86 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274844651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.511 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds