Wall clock time and date at job start Tue Mar 31 2020 05:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47291 * 2 1 4 4 C 1.53001 * 109.46820 * 240.00091 * 2 1 3 5 5 O 1.42900 * 109.47202 * 120.00480 * 2 1 3 6 6 C 1.35914 * 117.00008 * 55.22273 * 5 2 1 7 7 C 1.38506 * 120.08639 * 5.20907 * 6 5 2 8 8 C 1.38458 * 120.00544 * 179.97438 * 7 6 5 9 9 F 1.35097 * 119.90895 * 179.97438 * 8 7 6 10 10 C 1.38662 * 120.17578 * 359.97438 * 8 7 6 11 11 C 1.38053 * 120.17067 * 359.74827 * 10 8 7 12 12 C 1.38971 * 119.98916 * 0.50575 * 11 10 8 13 13 N 1.39566 * 120.08254 * 179.76635 * 12 11 10 14 14 C 1.34771 * 119.99942 * 34.93859 * 13 12 11 15 15 O 1.21789 * 120.00051 * 355.11583 * 14 13 12 16 16 C 1.41739 * 120.00298 * 175.12018 * 14 13 12 17 17 H 1.08001 * 119.99285 * 359.97438 * 16 14 13 18 18 C 1.40136 * 120.00511 * 179.72164 * 16 14 13 19 19 N 1.30628 * 119.99667 * 0.27300 * 18 16 14 20 20 Si 1.86793 * 120.00283 * 180.27257 * 18 16 14 21 21 H 1.48500 * 109.47244 * 90.00029 * 20 18 16 22 22 H 1.48497 * 109.47507 * 209.99829 * 20 18 16 23 23 H 1.48501 * 109.47407 * 330.00253 * 20 18 16 24 24 H 1.09002 * 109.46886 * 305.37391 * 1 2 3 25 25 H 1.09000 * 109.47128 * 65.37107 * 1 2 3 26 26 H 1.08997 * 109.46872 * 185.37270 * 1 2 3 27 27 H 1.08996 * 109.46916 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47102 * 300.00772 * 3 2 1 29 29 H 1.09004 * 109.46605 * 60.00090 * 3 2 1 30 30 H 1.08997 * 109.47469 * 304.75997 * 4 2 1 31 31 H 1.08998 * 109.47120 * 64.76256 * 4 2 1 32 32 H 1.09000 * 109.47114 * 184.75893 * 4 2 1 33 33 H 1.08000 * 119.99169 * 359.95451 * 7 6 5 34 34 H 1.07998 * 119.90911 * 180.02562 * 10 8 7 35 35 H 1.08001 * 120.00039 * 180.24971 * 11 10 8 36 36 H 0.97001 * 120.00075 * 214.92812 * 13 12 11 37 37 H 0.96998 * 120.00151 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5608 -1.9412 1.3725 7 6 0.7716 -2.5631 0.4192 8 6 0.3191 -3.8545 0.6303 9 9 -0.4510 -4.4590 -0.3006 10 6 0.6542 -4.5289 1.7946 11 6 1.4452 -3.9180 2.7470 12 6 1.8988 -2.6201 2.5447 13 7 2.6945 -1.9990 3.5085 14 6 3.5820 -2.7234 4.2185 15 8 3.6279 -3.9328 4.0831 16 6 4.4619 -2.0777 5.1229 17 1 4.4214 -1.0051 5.2426 18 6 5.3807 -2.8315 5.8654 19 7 5.4299 -4.1287 5.7202 20 14 6.5351 -1.9813 7.0628 21 1 5.8936 -1.9061 8.4000 22 1 7.8000 -2.7526 7.1634 23 1 6.8293 -0.6091 6.5772 24 1 -0.3633 0.5949 0.8380 25 1 -0.3633 0.4283 -0.9342 26 1 -0.3633 -1.0231 0.0962 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6087 -1.7213 -1.2930 31 1 1.7479 -0.1605 -2.1372 32 1 3.1266 -0.7957 -1.2077 33 1 0.5090 -2.0404 -0.4887 34 1 0.2992 -5.5362 1.9546 35 1 1.7079 -4.4473 3.6510 36 1 2.6089 -1.0459 3.6673 37 1 6.0656 -4.6506 6.2344 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274844651.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:20 Heat of formation + Delta-G solvation = -97.250781 kcal Electronic energy + Delta-G solvation = -22377.371641 eV Core-core repulsion = 18841.619832 eV Total energy + Delta-G solvation = -3535.751809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -49.83637 -41.89690 -40.04141 -38.17290 -35.49074 -34.87573 -34.25474 -31.77711 -30.20625 -28.35634 -28.21633 -28.10175 -24.43493 -23.64868 -21.80116 -21.40341 -19.61931 -18.73172 -18.25539 -17.77061 -17.36241 -16.74634 -16.64375 -16.19770 -15.97655 -15.68694 -15.53336 -14.92775 -14.69536 -14.47031 -14.21962 -13.89262 -13.68022 -13.25326 -13.12314 -13.03336 -12.81353 -12.77500 -12.76322 -12.68032 -12.54424 -12.12199 -12.01824 -11.55430 -11.27504 -11.04721 -10.70883 -9.89076 -9.48987 -8.55763 -8.37253 -7.00368 0.19805 0.31398 1.40067 1.40324 1.56888 2.16105 2.21818 2.32993 2.64867 2.94781 3.29943 3.62063 3.74434 3.78689 3.83781 3.98961 4.04366 4.13757 4.49410 4.59625 4.63629 4.72991 4.77787 4.85542 4.89579 4.92754 5.01840 5.17214 5.21079 5.26392 5.30527 5.32341 5.37252 5.74737 5.89130 6.14120 6.18782 6.57752 6.74571 7.38952 8.38578 8.57018 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018735 B = 0.005314 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.130561 B = 5268.160014 C = 6488.987564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.094 3.906 3 C -0.134 4.134 4 C -0.195 4.195 5 O -0.315 6.315 6 C 0.119 3.881 7 C -0.230 4.230 8 C 0.088 3.912 9 F -0.139 7.139 10 C -0.168 4.168 11 C -0.092 4.092 12 C 0.121 3.879 13 N -0.686 5.686 14 C 0.531 3.469 15 O -0.613 6.613 16 C -0.564 4.564 17 H 0.087 0.913 18 C 0.034 3.966 19 N -0.800 5.800 20 Si 1.000 3.000 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.250 1.250 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.055 0.945 33 H 0.193 0.807 34 H 0.147 0.853 35 H 0.124 0.876 36 H 0.404 0.596 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.561 10.229 -11.382 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.057 3.943 3 C -0.191 4.191 4 C -0.252 4.252 5 O -0.229 6.229 6 C 0.070 3.930 7 C -0.249 4.249 8 C 0.067 3.933 9 F -0.118 7.118 10 C -0.187 4.187 11 C -0.113 4.113 12 C 0.023 3.977 13 N -0.330 5.330 14 C 0.341 3.659 15 O -0.500 6.500 16 C -0.599 4.599 17 H 0.106 0.894 18 C -0.185 4.185 19 N -0.428 5.428 20 Si 0.819 3.181 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.173 1.173 24 H 0.084 0.916 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.124 0.876 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.209 0.791 34 H 0.165 0.835 35 H 0.142 0.858 36 H 0.239 0.761 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.278 9.350 -11.311 16.848 hybrid contribution 0.358 0.098 0.516 0.635 sum -7.920 9.448 -10.795 16.386 Atomic orbital electron populations 1.22920 0.93747 1.04436 1.04725 1.22216 0.94999 0.93743 0.83371 1.21820 1.01873 0.91259 1.04176 1.22836 1.02156 1.02130 0.98091 1.86169 1.67115 1.23283 1.46367 1.18369 0.97128 0.85990 0.91483 1.21881 1.04661 0.95388 1.02976 1.17314 0.96082 0.91979 0.87885 1.91450 1.72952 1.83299 1.64121 1.21034 1.02075 1.01850 0.93773 1.20993 0.95577 0.94220 1.00513 1.17668 0.96524 0.94210 0.89315 1.43480 1.39019 1.12094 1.38408 1.17392 0.80456 0.86686 0.81370 1.90584 1.73558 1.15705 1.70195 1.20541 1.19248 0.96145 1.23961 0.89447 1.26994 0.98340 0.95038 0.98106 1.70153 1.30452 1.08263 1.33957 0.84974 0.76532 0.79082 0.77491 1.18324 1.19538 1.17294 0.91594 0.88092 0.90608 0.92304 0.87586 0.91674 0.91055 0.87919 0.92589 0.79092 0.83533 0.85807 0.76131 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.72 8.06 71.98 0.58 -3.14 16 2 C 0.09 2.08 1.11 -10.79 -0.01 2.07 16 3 C -0.13 -2.37 8.84 71.98 0.64 -1.73 16 4 C -0.20 -3.92 8.26 71.98 0.59 -3.32 16 5 O -0.31 -10.23 9.35 -92.58 -0.87 -11.09 16 6 C 0.12 4.29 6.17 22.67 0.14 4.43 16 7 C -0.23 -7.08 6.14 22.39 0.14 -6.94 16 8 C 0.09 2.89 7.30 22.42 0.16 3.05 16 9 F -0.14 -4.18 17.26 44.97 0.78 -3.41 16 10 C -0.17 -6.15 10.02 22.33 0.22 -5.93 16 11 C -0.09 -4.09 8.69 22.40 0.19 -3.90 16 12 C 0.12 5.36 6.32 38.42 0.24 5.60 16 13 N -0.69 -33.02 5.16 -311.01 -1.60 -34.63 16 14 C 0.53 30.93 7.42 85.11 0.63 31.56 16 15 O -0.61 -40.04 12.29 -4.63 -0.06 -40.10 16 16 C -0.56 -31.60 9.31 23.60 0.22 -31.38 16 17 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 18 C 0.03 1.82 5.50 85.33 0.47 2.29 16 19 N -0.80 -47.58 11.73 21.85 0.26 -47.32 16 20 Si 1.00 39.75 29.56 68.60 2.03 41.78 16 21 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.59 4.24 -2.39 -0.01 1.58 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.07 1.54 4.57 -2.39 -0.01 1.53 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.19 4.62 3.07 -2.91 -0.01 4.61 16 34 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 35 H 0.12 6.40 6.20 -2.91 -0.02 6.39 16 36 H 0.40 17.31 8.53 -92.71 -0.79 16.52 16 37 H 0.28 14.93 8.29 -92.71 -0.77 14.16 16 Total: -1.00 -72.15 307.59 5.09 -67.07 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.33 Total: 35.04 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 4.22 Total: -7.34 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -1.35 Total: -81.95 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.92 Total: -51.19 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.78 Total: -3.41 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Total: -72.15 5.09 -67.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274844651.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.184 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds