Wall clock time and date at job start Tue Mar 31 2020 06:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99516 * 2 1 4 4 H 1.09002 * 109.47382 * 30.00095 * 3 2 1 5 5 C 1.50699 * 109.47184 * 270.00097 * 3 2 1 6 6 C 1.38222 * 120.01191 * 334.73007 * 5 3 2 7 7 C 1.38221 * 120.02726 * 179.72480 * 6 5 3 8 8 C 1.38277 * 120.04871 * 0.54971 * 7 6 5 9 9 C 1.38170 * 120.02464 * 359.72230 * 8 7 6 10 10 C 1.38432 * 120.01593 * 155.00263 * 5 3 2 11 11 F 1.35102 * 120.02277 * 0.02562 * 10 5 3 12 12 C 1.53000 * 109.46726 * 150.00349 * 3 2 1 13 13 H 1.09001 * 109.46952 * 174.99897 * 12 3 2 14 14 C 1.52997 * 109.47427 * 54.99735 * 12 3 2 15 15 N 1.46506 * 109.46901 * 294.99552 * 12 3 2 16 16 C 1.34780 * 119.99797 * 204.99914 * 15 12 3 17 17 O 1.21686 * 119.99890 * 0.02562 * 16 15 12 18 18 C 1.46372 * 119.99620 * 180.02562 * 16 15 12 19 19 H 1.08000 * 120.00388 * 359.97438 * 18 16 15 20 20 C 1.40049 * 119.99591 * 180.02562 * 18 16 15 21 21 N 1.30668 * 120.00368 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99901 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46791 * 59.99827 * 22 20 18 24 24 H 1.48499 * 109.47314 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47417 * 300.00215 * 22 20 18 26 26 H 1.08994 * 109.47272 * 60.00221 * 1 2 3 27 27 H 1.09002 * 109.46835 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46835 * 299.99639 * 1 2 3 29 29 H 1.08007 * 119.98863 * 359.97438 * 6 5 3 30 30 H 1.07993 * 119.97841 * 180.27443 * 7 6 5 31 31 H 1.08000 * 119.98902 * 179.74955 * 8 7 6 32 32 H 1.07996 * 120.01639 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.46799 * 60.00212 * 14 12 3 34 34 H 1.09004 * 109.47198 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.47187 * 300.00018 * 14 12 3 36 36 H 0.96996 * 119.99732 * 25.00286 * 15 12 3 37 37 H 0.96999 * 120.00549 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7645 -1.4208 6 6 2.3600 0.8350 -2.4334 7 6 2.5417 1.2556 -3.7375 8 6 2.5894 2.6064 -4.0291 9 6 2.4498 3.5373 -3.0177 10 6 2.2621 3.1171 -1.7115 11 9 2.1260 4.0265 -0.7217 12 6 3.3589 1.2633 0.7212 13 1 3.8427 2.2371 0.6443 14 6 4.2491 0.1992 0.0762 15 7 3.1477 0.9331 2.1328 16 6 4.0519 1.3145 3.0567 17 8 5.0434 1.9335 2.7184 18 6 3.8411 0.9841 4.4670 19 1 2.9608 0.4351 4.7673 20 6 4.7803 1.3809 5.4270 21 7 5.8451 2.0456 5.0638 22 14 4.5110 0.9599 7.2270 23 1 4.4377 -0.5149 7.3847 24 1 5.6407 1.4880 8.0333 25 1 3.2408 1.5713 7.6937 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.3277 -0.2204 -2.2062 30 1 2.6508 0.5287 -4.5287 31 1 2.7355 2.9339 -5.0478 32 1 2.4868 4.5923 -3.2456 33 1 4.4063 0.4450 -0.9741 34 1 5.2102 0.1695 0.5897 35 1 3.7654 -0.7745 0.1531 36 1 2.3572 0.4400 2.4025 37 1 6.4954 2.3208 5.7288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274860021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:33 Heat of formation + Delta-G solvation = -107.128693 kcal Electronic energy + Delta-G solvation = -22297.275531 eV Core-core repulsion = 18761.095384 eV Total energy + Delta-G solvation = -3536.180147 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -48.82242 -39.71323 -37.92169 -36.90148 -34.05218 -32.39412 -31.62186 -30.56371 -29.26735 -27.00626 -26.09302 -25.54788 -22.66922 -22.39235 -20.56132 -19.29222 -17.72428 -17.25713 -16.80374 -16.30685 -15.70781 -15.46959 -15.30123 -15.03513 -14.76699 -14.15747 -14.01698 -13.83330 -13.17042 -13.13068 -12.71425 -12.65965 -12.24000 -12.19188 -11.78265 -11.61413 -11.47854 -11.15018 -11.03647 -10.89471 -10.61311 -10.47898 -10.38619 -10.20396 -9.63696 -8.99037 -8.80164 -8.68620 -7.55927 -7.43521 -6.13161 -4.58614 1.08424 1.16656 3.19143 3.23684 3.25695 3.51684 3.78541 4.13966 4.29023 4.50153 4.64595 4.76237 4.86275 5.04152 5.19213 5.22391 5.28439 5.39785 5.46507 5.52863 5.69830 5.79826 5.81909 5.99914 6.04275 6.10973 6.21421 6.28517 6.34642 6.38648 6.70939 6.83670 6.97634 7.24723 7.48205 8.00361 8.16720 8.39091 9.07566 9.61450 10.65895 10.84851 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.004449 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.437644 B = 6292.493691 C = 6653.303089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.124 3.876 4 H 0.076 0.924 5 C -0.136 4.136 6 C -0.066 4.066 7 C -0.137 4.137 8 C -0.094 4.094 9 C -0.158 4.158 10 C 0.107 3.893 11 F -0.134 7.134 12 C 0.166 3.834 13 H 0.084 0.916 14 C -0.153 4.153 15 N -0.758 5.758 16 C 0.557 3.443 17 O -0.580 6.580 18 C -0.545 4.545 19 H 0.066 0.934 20 C 0.088 3.912 21 N -0.769 5.769 22 Si 0.907 3.093 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.269 1.269 26 H 0.037 0.963 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.382 0.618 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 -1.894 -15.837 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.285 6.285 3 C 0.066 3.934 4 H 0.094 0.906 5 C -0.137 4.137 6 C -0.084 4.084 7 C -0.155 4.155 8 C -0.113 4.113 9 C -0.177 4.177 10 C 0.088 3.912 11 F -0.112 7.112 12 C 0.060 3.940 13 H 0.102 0.898 14 C -0.212 4.212 15 N -0.413 5.413 16 C 0.361 3.639 17 O -0.463 6.463 18 C -0.582 4.582 19 H 0.085 0.915 20 C -0.131 4.131 21 N -0.397 5.397 22 Si 0.732 3.268 23 H -0.193 1.193 24 H -0.206 1.206 25 H -0.193 1.193 26 H 0.056 0.944 27 H 0.104 0.896 28 H 0.062 0.938 29 H 0.157 0.843 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.214 0.786 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.363 -1.463 -15.976 18.575 hybrid contribution -0.761 0.008 1.104 1.341 sum -10.124 -1.455 -14.871 18.049 Atomic orbital electron populations 1.22820 0.81556 1.02572 0.99979 1.87958 1.19193 1.26724 1.94606 1.21294 0.96838 0.85021 0.90279 0.90611 1.20458 1.03650 0.91780 0.97852 1.20949 0.95988 1.00183 0.91323 1.21214 1.01650 0.95891 0.96728 1.20992 0.98599 0.92832 0.98834 1.21108 1.04270 1.01088 0.91219 1.17597 1.02205 0.85993 0.85432 1.91537 1.92989 1.66079 1.60609 1.20485 0.90679 0.99473 0.83392 0.89764 1.22089 1.00628 0.99389 0.99082 1.46122 1.27543 1.63164 1.04460 1.18204 0.81467 0.78791 0.85488 1.90595 1.29731 1.44364 1.81601 1.20842 1.08386 1.38623 0.90370 0.91544 1.25691 0.94100 0.93129 1.00209 1.70010 1.07675 1.27507 1.34533 0.86454 0.78424 0.79427 0.82529 1.19311 1.20603 1.19341 0.94444 0.89606 0.93759 0.84292 0.85458 0.85281 0.84826 0.93448 0.92044 0.92352 0.78650 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.81 101.05 1.09 1.40 16 2 O -0.37 -5.34 8.05 -35.23 -0.28 -5.62 16 3 C 0.12 2.00 1.94 -27.88 -0.05 1.95 16 4 H 0.08 1.25 7.44 -51.93 -0.39 0.87 16 5 C -0.14 -1.95 4.46 -104.56 -0.47 -2.42 16 6 C -0.07 -0.81 8.00 -39.59 -0.32 -1.12 16 7 C -0.14 -1.37 10.05 -39.57 -0.40 -1.77 16 8 C -0.09 -0.92 10.04 -39.59 -0.40 -1.32 16 9 C -0.16 -1.84 10.03 -39.52 -0.40 -2.24 16 10 C 0.11 1.55 7.24 -39.42 -0.29 1.27 16 11 F -0.13 -2.21 16.57 2.25 0.04 -2.17 16 12 C 0.17 3.38 2.44 -67.93 -0.17 3.22 16 13 H 0.08 1.97 7.58 -51.93 -0.39 1.58 16 14 C -0.15 -2.92 8.93 37.16 0.33 -2.59 16 15 N -0.76 -17.62 5.06 -55.21 -0.28 -17.90 16 16 C 0.56 16.17 7.71 -12.99 -0.10 16.07 16 17 O -0.58 -19.08 14.68 5.20 0.08 -19.00 16 18 C -0.55 -15.71 9.54 -35.63 -0.34 -16.05 16 19 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 20 C 0.09 2.51 5.50 -17.37 -0.10 2.41 16 21 N -0.77 -23.43 11.83 55.55 0.66 -22.78 16 22 Si 0.91 20.48 29.56 -169.99 -5.02 15.46 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 26 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 29 H 0.14 1.62 7.36 -52.48 -0.39 1.23 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.05 0.79 6.50 -51.93 -0.34 0.45 16 34 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.06 1.05 7.56 -51.93 -0.39 0.66 16 36 H 0.38 8.03 8.36 -40.82 -0.34 7.69 16 37 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 LS Contribution 321.36 15.07 4.84 4.84 Total: -1.00 -34.73 321.36 -6.30 -41.04 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.74 Total: 7.33 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -1.59 Total: -1.20 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.38 Total: -40.68 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.21 Total: -24.62 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.73 -6.30 -41.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274860021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.094 kcal (2) G-P(sol) polarization free energy of solvation -34.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds