Wall clock time and date at job start Tue Mar 31 2020 06:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99516 * 2 1 4 4 H 1.09002 * 109.47382 * 30.00095 * 3 2 1 5 5 C 1.50699 * 109.47184 * 270.00097 * 3 2 1 6 6 C 1.38222 * 120.01191 * 334.73007 * 5 3 2 7 7 C 1.38221 * 120.02726 * 179.72480 * 6 5 3 8 8 C 1.38277 * 120.04871 * 0.54971 * 7 6 5 9 9 C 1.38170 * 120.02464 * 359.72230 * 8 7 6 10 10 C 1.38432 * 120.01593 * 155.00263 * 5 3 2 11 11 F 1.35102 * 120.02277 * 0.02562 * 10 5 3 12 12 C 1.53000 * 109.46726 * 150.00349 * 3 2 1 13 13 H 1.09001 * 109.46952 * 174.99897 * 12 3 2 14 14 C 1.52997 * 109.47427 * 54.99735 * 12 3 2 15 15 N 1.46506 * 109.46901 * 294.99552 * 12 3 2 16 16 C 1.34780 * 119.99797 * 204.99914 * 15 12 3 17 17 O 1.21686 * 119.99890 * 0.02562 * 16 15 12 18 18 C 1.46372 * 119.99620 * 180.02562 * 16 15 12 19 19 H 1.08000 * 120.00388 * 359.97438 * 18 16 15 20 20 C 1.40049 * 119.99591 * 180.02562 * 18 16 15 21 21 N 1.30668 * 120.00368 * 359.97438 * 20 18 16 22 22 Si 1.86804 * 119.99901 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46791 * 59.99827 * 22 20 18 24 24 H 1.48499 * 109.47314 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47417 * 300.00215 * 22 20 18 26 26 H 1.08994 * 109.47272 * 60.00221 * 1 2 3 27 27 H 1.09002 * 109.46835 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46835 * 299.99639 * 1 2 3 29 29 H 1.08007 * 119.98863 * 359.97438 * 6 5 3 30 30 H 1.07993 * 119.97841 * 180.27443 * 7 6 5 31 31 H 1.08000 * 119.98902 * 179.74955 * 8 7 6 32 32 H 1.07996 * 120.01639 * 180.02562 * 9 8 7 33 33 H 1.09003 * 109.46799 * 60.00212 * 14 12 3 34 34 H 1.09004 * 109.47198 * 179.97438 * 14 12 3 35 35 H 1.09001 * 109.47187 * 300.00018 * 14 12 3 36 36 H 0.96996 * 119.99732 * 25.00286 * 15 12 3 37 37 H 0.96999 * 120.00549 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2145 1.7645 -1.4208 6 6 2.3600 0.8350 -2.4334 7 6 2.5417 1.2556 -3.7375 8 6 2.5894 2.6064 -4.0291 9 6 2.4498 3.5373 -3.0177 10 6 2.2621 3.1171 -1.7115 11 9 2.1260 4.0265 -0.7217 12 6 3.3589 1.2633 0.7212 13 1 3.8427 2.2371 0.6443 14 6 4.2491 0.1992 0.0762 15 7 3.1477 0.9331 2.1328 16 6 4.0519 1.3145 3.0567 17 8 5.0434 1.9335 2.7184 18 6 3.8411 0.9841 4.4670 19 1 2.9608 0.4351 4.7673 20 6 4.7803 1.3809 5.4270 21 7 5.8451 2.0456 5.0638 22 14 4.5110 0.9599 7.2270 23 1 4.4377 -0.5149 7.3847 24 1 5.6407 1.4880 8.0333 25 1 3.2408 1.5713 7.6937 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.3277 -0.2204 -2.2062 30 1 2.6508 0.5287 -4.5287 31 1 2.7355 2.9339 -5.0478 32 1 2.4868 4.5923 -3.2456 33 1 4.4063 0.4450 -0.9741 34 1 5.2102 0.1695 0.5897 35 1 3.7654 -0.7745 0.1531 36 1 2.3572 0.4400 2.4025 37 1 6.4954 2.3208 5.7288 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274860021.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:29 Heat of formation + Delta-G solvation = -131.518462 kcal Electronic energy + Delta-G solvation = -22298.333151 eV Core-core repulsion = 18761.095384 eV Total energy + Delta-G solvation = -3537.237767 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -49.98006 -40.88456 -39.42469 -38.48281 -35.79961 -34.53497 -33.02798 -31.48572 -30.89466 -28.19826 -28.12504 -26.71685 -23.78746 -23.60121 -22.02800 -21.19764 -19.35982 -18.65249 -17.93878 -17.55385 -17.40053 -16.90685 -16.55645 -16.39900 -15.99734 -15.62671 -15.33503 -15.13471 -14.83578 -14.42868 -14.15581 -14.04844 -13.85974 -13.54121 -13.13764 -13.00738 -12.76860 -12.69534 -12.65699 -12.56196 -12.16003 -12.06425 -12.03626 -11.87080 -10.92082 -10.77440 -9.96384 -9.86401 -9.68393 -9.44453 -8.28628 -6.85991 0.13502 0.26085 1.39289 1.43430 1.54944 2.24433 2.46405 2.59978 2.64717 3.01711 3.32265 3.62403 3.65981 3.79390 3.90094 3.95452 4.19092 4.37364 4.40665 4.45031 4.52768 4.54617 4.64187 4.79017 4.85912 4.92236 5.03036 5.10558 5.18089 5.30761 5.32902 5.40125 5.47612 5.87533 5.94752 6.11142 6.21898 6.28005 6.86353 7.54983 8.49683 8.67736 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026398 B = 0.004449 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.437644 B = 6292.493691 C = 6653.303089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.375 6.375 3 C 0.143 3.857 4 H 0.062 0.938 5 C -0.155 4.155 6 C -0.072 4.072 7 C -0.125 4.125 8 C -0.083 4.083 9 C -0.160 4.160 10 C 0.071 3.929 11 F -0.157 7.157 12 C 0.163 3.837 13 H 0.044 0.956 14 C -0.138 4.138 15 N -0.747 5.747 16 C 0.540 3.460 17 O -0.631 6.631 18 C -0.574 4.574 19 H 0.086 0.914 20 C 0.029 3.971 21 N -0.822 5.822 22 Si 0.999 3.001 23 H -0.254 1.254 24 H -0.274 1.274 25 H -0.254 1.254 26 H 0.048 0.952 27 H 0.111 0.889 28 H 0.042 0.958 29 H 0.146 0.854 30 H 0.164 0.836 31 H 0.168 0.832 32 H 0.150 0.850 33 H 0.072 0.928 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.394 0.606 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.949 -3.401 -17.127 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.294 6.294 3 C 0.084 3.916 4 H 0.080 0.920 5 C -0.156 4.156 6 C -0.090 4.090 7 C -0.143 4.143 8 C -0.101 4.101 9 C -0.179 4.179 10 C 0.052 3.948 11 F -0.136 7.136 12 C 0.057 3.943 13 H 0.062 0.938 14 C -0.196 4.196 15 N -0.400 5.400 16 C 0.344 3.656 17 O -0.518 6.518 18 C -0.611 4.611 19 H 0.105 0.895 20 C -0.186 4.186 21 N -0.452 5.452 22 Si 0.818 3.182 23 H -0.177 1.177 24 H -0.198 1.198 25 H -0.178 1.178 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.060 0.940 29 H 0.163 0.837 30 H 0.181 0.819 31 H 0.186 0.814 32 H 0.167 0.833 33 H 0.091 0.909 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.227 0.773 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.976 -2.998 -17.306 20.711 hybrid contribution -0.322 0.468 1.340 1.456 sum -11.298 -2.530 -15.966 19.722 Atomic orbital electron populations 1.23040 0.79487 1.04349 1.00463 1.87911 1.21303 1.25397 1.94754 1.20768 0.93942 0.85641 0.91225 0.91991 1.20332 1.05915 0.92283 0.97098 1.21115 0.96011 0.99998 0.91845 1.21647 0.99308 0.96862 0.96492 1.21476 0.96231 0.92368 1.00002 1.21419 1.03503 1.02634 0.90318 1.18054 1.04494 0.85957 0.86265 1.91470 1.93483 1.66845 1.61827 1.20536 0.93706 0.97761 0.82252 0.93806 1.21924 0.98240 0.99588 0.99879 1.45805 1.26696 1.62202 1.05344 1.18610 0.81591 0.78524 0.86876 1.90546 1.31988 1.46642 1.82611 1.21395 1.09583 1.39302 0.90816 0.89550 1.26987 0.93130 0.92148 1.06350 1.70189 1.09091 1.28856 1.37026 0.85058 0.78893 0.79812 0.74418 1.17749 1.19829 1.17842 0.93334 0.87096 0.93979 0.83672 0.81888 0.81431 0.83267 0.90892 0.95971 0.90951 0.77261 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 10.81 113.37 1.23 1.69 16 2 O -0.38 -10.60 8.05 -148.98 -1.20 -11.80 16 3 C 0.14 4.72 1.94 29.85 0.06 4.78 16 4 H 0.06 2.16 7.44 -2.39 -0.02 2.15 16 5 C -0.15 -4.42 4.46 -19.82 -0.09 -4.51 16 6 C -0.07 -1.59 8.00 22.26 0.18 -1.41 16 7 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 8 C -0.08 -1.31 10.04 22.26 0.22 -1.09 16 9 C -0.16 -3.48 10.03 22.31 0.22 -3.25 16 10 C 0.07 2.10 7.24 22.38 0.16 2.26 16 11 F -0.16 -5.56 16.57 44.97 0.75 -4.81 16 12 C 0.16 6.99 2.44 44.99 0.11 7.10 16 13 H 0.04 2.23 7.58 -2.39 -0.02 2.21 16 14 C -0.14 -5.41 8.93 71.98 0.64 -4.77 16 15 N -0.75 -36.24 5.06 -446.81 -2.26 -38.50 16 16 C 0.54 32.89 7.71 86.36 0.67 33.55 16 17 O -0.63 -44.10 14.68 -4.30 -0.06 -44.17 16 18 C -0.57 -33.83 9.54 24.83 0.24 -33.59 16 19 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16 20 C 0.03 1.66 5.50 85.31 0.47 2.13 16 21 N -0.82 -51.89 11.83 21.84 0.26 -51.64 16 22 Si 1.00 42.08 29.56 68.60 2.03 44.11 16 23 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 25 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 26 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 0.89 8.08 -2.39 -0.02 0.87 16 29 H 0.15 3.00 7.36 -2.91 -0.02 2.98 16 30 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 31 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 32 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 33 H 0.07 2.44 6.50 -2.39 -0.02 2.43 16 34 H 0.02 1.00 8.14 -2.38 -0.02 0.99 16 35 H 0.07 2.60 7.56 -2.39 -0.02 2.58 16 36 H 0.39 16.96 8.36 -92.71 -0.78 16.18 16 37 H 0.27 15.69 8.29 -92.71 -0.77 14.92 16 Total: -1.00 -80.96 321.36 4.16 -76.81 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.32 Total: 28.90 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 4.33 Total: 1.10 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -2.00 Total: -90.13 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -1.26 Total: -55.96 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.75 Total: -4.81 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -80.96 4.16 -76.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274860021.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.712 kcal (2) G-P(sol) polarization free energy of solvation -80.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds