Wall clock time and date at job start Tue Mar 31 2020 06:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35697 * 116.99564 * 2 1 4 4 C 1.38686 * 120.13040 * 0.02562 * 3 2 1 5 5 C 1.38050 * 120.11800 * 179.97438 * 4 3 2 6 6 C 1.38735 * 120.36301 * 359.97438 * 5 4 3 7 7 F 1.35103 * 119.87148 * 180.02562 * 6 5 4 8 8 C 1.37981 * 120.24756 * 359.78366 * 6 5 4 9 9 C 1.39724 * 119.88314 * 0.46946 * 8 6 5 10 10 C 1.47531 * 120.18113 * 179.78707 * 9 8 6 11 11 O 1.21592 * 119.99954 * 134.99449 * 10 9 8 12 12 N 1.34778 * 119.99983 * 314.99853 * 10 9 8 13 13 C 1.46496 * 120.00271 * 5.07703 * 12 10 9 14 14 C 1.46499 * 120.00021 * 185.08115 * 12 10 9 15 15 H 1.08998 * 109.47359 * 359.97438 * 14 12 10 16 16 C 1.53001 * 109.47180 * 239.99935 * 14 12 10 17 17 C 1.50700 * 109.47157 * 119.99715 * 14 12 10 18 18 H 1.08001 * 119.99744 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00334 * 180.02562 * 17 14 12 20 20 N 1.31518 * 119.99712 * 359.97438 * 19 17 14 21 21 Si 1.86802 * 120.00448 * 180.02562 * 19 17 14 22 22 H 1.48495 * 109.46788 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47320 * 119.99655 * 21 19 17 24 24 H 1.48504 * 109.46655 * 240.00139 * 21 19 17 25 25 H 1.08999 * 109.46777 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46984 * 300.00050 * 1 2 3 27 27 H 1.08992 * 109.47028 * 60.00658 * 1 2 3 28 28 H 1.08007 * 119.93761 * 0.02562 * 4 3 2 29 29 H 1.07997 * 119.81685 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.05793 * 180.25869 * 8 6 5 31 31 H 1.09003 * 109.46979 * 95.32496 * 13 12 10 32 32 H 1.09002 * 109.47165 * 335.33253 * 13 12 10 33 33 H 1.08993 * 109.47822 * 215.32311 * 13 12 10 34 34 H 1.08999 * 109.47087 * 299.99481 * 16 14 12 35 35 H 1.08995 * 109.47288 * 60.00061 * 16 14 12 36 36 H 1.09005 * 109.46896 * 180.02562 * 16 14 12 37 37 H 0.97004 * 120.00021 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2922 2.3739 0.0005 5 6 1.9192 3.6038 0.0011 6 6 3.3041 3.6850 0.0016 7 9 3.9073 4.8939 0.0027 8 6 4.0678 2.5358 0.0061 9 6 3.4440 1.2855 0.0002 10 6 4.2541 0.0525 0.0003 11 8 3.9627 -0.8664 0.7413 12 7 5.3173 -0.0553 -0.8210 13 6 5.7355 1.0906 -1.6323 14 6 6.0548 -1.3185 -0.9026 15 1 5.6006 -2.0483 -0.2325 16 6 7.5104 -1.0867 -0.4923 17 6 6.0080 -1.8371 -2.3168 18 1 5.4819 -1.2810 -3.0787 19 6 6.6368 -3.0213 -2.6380 20 7 7.2778 -3.6981 -1.7103 21 14 6.5794 -3.6638 -4.3912 22 1 5.8015 -2.7238 -5.2375 23 1 7.9616 -3.7800 -4.9213 24 1 5.9287 -4.9986 -4.4080 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.2136 2.3186 0.0014 29 1 1.3282 4.5078 0.0019 30 1 5.1457 2.6026 0.0107 31 1 6.5259 1.6336 -1.1140 32 1 4.8844 1.7527 -1.7919 33 1 6.1073 0.7385 -2.5944 34 1 7.9649 -0.3568 -1.1622 35 1 7.5442 -0.7116 0.5306 36 1 8.0592 -2.0265 -0.5534 37 1 7.7199 -4.5315 -1.9362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285690309.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:03 Heat of formation + Delta-G solvation = -78.968616 kcal Electronic energy + Delta-G solvation = -22358.096865 eV Core-core repulsion = 18823.137830 eV Total energy + Delta-G solvation = -3534.959034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.85079 -40.45991 -38.65105 -37.05823 -35.27257 -33.00392 -31.50967 -29.80832 -29.13387 -27.24690 -26.22769 -25.20752 -24.01300 -22.33325 -21.11428 -19.08805 -17.92511 -17.23713 -16.98272 -16.40439 -16.10738 -15.63311 -15.41550 -15.23172 -14.74838 -14.53021 -14.22732 -14.08128 -13.20063 -13.04988 -12.88319 -12.50771 -12.45717 -12.14487 -11.90946 -11.63448 -11.46849 -11.15752 -11.04126 -10.89019 -10.81075 -10.67634 -10.22221 -10.15316 -9.25229 -9.14432 -8.93012 -8.41219 -8.14389 -7.55877 -6.05615 -4.13323 0.85002 1.13284 3.15239 3.22407 3.27139 3.34906 3.37992 3.65982 3.93563 4.25911 4.40439 4.56479 4.67017 4.92177 5.02415 5.08699 5.15943 5.25719 5.41700 5.46561 5.59373 5.77936 5.88963 5.95903 6.01621 6.08639 6.40133 6.58361 6.78361 6.86311 7.08738 7.29664 7.44790 7.56137 7.73532 8.04232 8.21101 8.52492 8.84503 9.05381 9.52902 10.99819 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.019514 B = 0.005229 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.510463 B = 5353.519749 C = 5978.958181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.286 6.286 3 C 0.166 3.834 4 C -0.192 4.192 5 C -0.099 4.099 6 C 0.049 3.951 7 F -0.141 7.141 8 C -0.086 4.086 9 C -0.123 4.123 10 C 0.552 3.448 11 O -0.531 6.531 12 N -0.585 5.585 13 C 0.075 3.925 14 C 0.259 3.741 15 H 0.064 0.936 16 C -0.146 4.146 17 C -0.524 4.524 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.103 0.897 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.151 0.849 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.012 0.988 36 H 0.094 0.906 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.784 13.956 1.855 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.197 6.197 3 C 0.118 3.882 4 C -0.211 4.211 5 C -0.118 4.118 6 C 0.030 3.970 7 F -0.120 7.120 8 C -0.105 4.105 9 C -0.127 4.127 10 C 0.338 3.662 11 O -0.409 6.409 12 N -0.316 5.316 13 C -0.069 4.069 14 C 0.159 3.841 15 H 0.082 0.918 16 C -0.205 4.205 17 C -0.563 4.563 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.121 0.879 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.168 0.832 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.031 0.969 36 H 0.112 0.888 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.693 13.099 2.254 17.059 hybrid contribution -0.110 0.115 -1.059 1.071 sum -10.804 13.215 1.195 17.111 Atomic orbital electron populations 1.23152 0.78499 1.04490 1.01005 1.86331 1.21023 1.25409 1.86970 1.18992 0.90907 0.84947 0.93320 1.21017 1.00433 0.91028 1.08579 1.20962 0.92648 0.98577 0.99611 1.17339 0.90845 0.80355 1.08509 1.91491 1.83748 1.42209 1.94521 1.21328 1.01319 0.89634 0.98230 1.19421 0.91198 0.94603 1.07451 1.17805 0.80918 0.85890 0.81579 1.90763 1.69792 1.39850 1.40521 1.48158 1.28800 1.14838 1.39777 1.21887 0.99008 0.88885 0.97107 1.18975 0.88111 0.79355 0.97668 0.91773 1.22079 0.99609 1.02718 0.96055 1.21352 1.33801 1.06889 0.94272 0.92152 1.24889 0.95024 0.96358 0.97510 1.69896 1.34471 1.15614 1.32571 0.86437 0.77689 0.78882 0.84372 1.19831 1.20928 1.20915 0.87862 0.92572 0.92609 0.84094 0.84376 0.83157 0.93548 0.92143 0.90193 0.95126 0.96914 0.88784 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.24 16 2 O -0.29 -4.76 9.41 -31.88 -0.30 -5.06 16 3 C 0.17 2.60 6.67 -38.71 -0.26 2.35 16 4 C -0.19 -2.21 9.03 -39.48 -0.36 -2.56 16 5 C -0.10 -1.08 10.01 -39.47 -0.39 -1.47 16 6 C 0.05 0.62 7.28 -39.49 -0.29 0.34 16 7 F -0.14 -1.79 17.26 2.25 0.04 -1.75 16 8 C -0.09 -1.24 7.43 -39.12 -0.29 -1.54 16 9 C -0.12 -2.15 5.08 -104.85 -0.53 -2.68 16 10 C 0.55 12.27 7.05 -12.47 -0.09 12.19 16 11 O -0.53 -13.86 15.68 -7.80 -0.12 -13.98 16 12 N -0.58 -12.98 2.75 -176.50 -0.49 -13.47 16 13 C 0.07 1.32 8.04 59.84 0.48 1.80 16 14 C 0.26 6.74 2.63 -69.08 -0.18 6.56 16 15 H 0.06 1.94 6.91 -51.93 -0.36 1.58 16 16 C -0.15 -3.55 8.97 37.16 0.33 -3.21 16 17 C -0.52 -14.32 8.04 -34.44 -0.28 -14.60 16 18 H 0.06 1.63 7.25 -52.49 -0.38 1.25 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 21 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.06 0.46 7.66 -51.93 -0.40 0.07 16 27 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 28 H 0.14 1.16 6.30 -52.48 -0.33 0.83 16 29 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.15 2.04 6.19 -52.49 -0.32 1.72 16 31 H 0.05 0.71 7.59 -51.93 -0.39 0.32 16 32 H 0.06 0.92 5.28 -51.93 -0.27 0.65 16 33 H 0.08 1.47 6.96 -51.93 -0.36 1.11 16 34 H 0.03 0.68 7.67 -51.93 -0.40 0.28 16 35 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -32.70 310.80 -5.87 -38.57 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.34 Total: -0.56 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -0.96 Total: 0.07 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.14 Total: -38.09 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.42 Total: -19.05 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.70 -5.87 -38.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285690309.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.396 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds