Wall clock time and date at job start Tue Mar 31 2020 06:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47539 * 2 1 4 4 C 1.53007 * 109.47323 * 120.00164 * 2 1 3 5 5 F 1.39899 * 109.47255 * 179.97438 * 4 2 1 6 6 N 1.46507 * 109.47188 * 239.99816 * 2 1 3 7 7 C 1.34781 * 119.99539 * 84.99764 * 6 2 1 8 8 O 1.21282 * 120.00102 * 0.02562 * 7 6 2 9 9 C 1.50705 * 119.99728 * 180.02562 * 7 6 2 10 10 C 1.50698 * 109.46930 * 180.02562 * 9 7 6 11 11 C 1.38297 * 119.93202 * 89.99982 * 10 9 7 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47448 * 89.99502 * 19 17 15 21 21 H 1.48501 * 109.47175 * 209.99712 * 19 17 15 22 22 H 1.48506 * 109.47415 * 329.99678 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38110 * 119.92772 * 359.48927 * 23 13 12 25 25 H 1.08997 * 109.46599 * 59.99754 * 1 2 3 26 26 H 1.08997 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46411 * 300.00066 * 1 2 3 28 28 H 1.08996 * 109.46766 * 299.99621 * 4 2 1 29 29 H 1.08998 * 109.46748 * 59.99759 * 4 2 1 30 30 H 0.96995 * 120.00045 * 265.00961 * 6 2 1 31 31 H 1.09003 * 109.46768 * 60.00063 * 9 7 6 32 32 H 1.09004 * 109.46918 * 300.00219 * 9 7 6 33 33 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 34 34 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 35 35 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 37 37 H 1.07996 * 119.96227 * 180.23396 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 9 3.4391 -0.7218 1.2490 6 7 2.0184 -0.6907 -1.1962 7 6 2.1470 -0.0183 -2.3572 8 8 1.8590 1.1586 -2.4115 9 6 2.6488 -0.7288 -3.5878 10 6 2.7002 0.2397 -4.7412 11 6 3.8495 0.9718 -4.9769 12 6 3.8996 1.8606 -6.0327 13 6 2.7941 2.0183 -6.8586 14 8 2.8404 2.8908 -7.8976 15 6 4.0240 3.4878 -8.1433 16 1 4.8587 3.3268 -7.4773 17 6 4.1696 4.3087 -9.2513 18 7 3.1530 4.5046 -10.0630 19 14 5.8097 5.1353 -9.5922 20 1 6.6414 4.2511 -10.4476 21 1 5.5783 6.4250 -10.2910 22 1 6.5135 5.3869 -8.3089 23 6 1.6396 1.2856 -6.6162 24 6 1.5975 0.3948 -5.5615 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 1.6768 -0.2074 2.1392 29 1 1.6767 -1.7489 1.2492 30 1 2.2489 -1.6318 -1.1527 31 1 1.9759 -1.5506 -3.8326 32 1 3.6480 -1.1214 -3.3987 33 1 4.7090 0.8484 -4.3346 34 1 4.7972 2.4323 -6.2160 35 1 3.2548 5.0791 -10.8379 36 1 0.7769 1.4093 -7.2539 37 1 0.7013 -0.1780 -5.3748 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288260221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:18 Heat of formation + Delta-G solvation = -100.042311 kcal Electronic energy + Delta-G solvation = -21027.435651 eV Core-core repulsion = 17491.562792 eV Total energy + Delta-G solvation = -3535.872858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -47.95912 -39.85797 -38.78160 -36.62857 -35.66084 -32.50921 -31.96021 -30.67276 -30.08635 -26.92563 -26.56539 -25.07515 -22.23374 -21.91223 -20.88353 -20.10824 -17.92547 -17.25789 -17.04047 -16.77990 -16.24323 -15.63816 -15.13474 -14.84260 -14.55202 -14.44101 -14.13618 -13.76831 -13.47474 -13.36419 -13.08046 -12.80010 -12.64816 -12.46223 -12.11287 -11.77858 -11.59836 -11.45358 -11.22644 -11.09435 -10.79182 -10.70900 -10.57052 -10.38575 -9.69109 -9.27608 -9.22028 -8.77356 -8.09045 -7.10682 -6.40109 -3.98524 2.30141 2.31772 2.78282 3.09561 3.17005 3.18654 3.22067 4.01275 4.02584 4.44146 4.48530 4.59871 4.75416 4.96903 5.06325 5.16186 5.25064 5.31082 5.34523 5.36897 5.39541 5.67186 5.72602 5.79519 5.90075 5.90929 6.27463 6.32644 6.47784 6.76174 6.97393 7.10987 7.29406 7.42763 7.43891 7.50906 7.89969 8.05474 8.32986 9.05735 9.76860 10.78175 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032387 B = 0.003085 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.342313 B = 9073.779911 C = 9442.173245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.109 3.891 3 H 0.098 0.902 4 C 0.055 3.945 5 F -0.213 7.213 6 N -0.736 5.736 7 C 0.512 3.488 8 O -0.519 6.519 9 C -0.079 4.079 10 C -0.170 4.170 11 C -0.056 4.056 12 C -0.232 4.232 13 C 0.157 3.843 14 O -0.179 6.179 15 C -0.391 4.391 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.192 4.192 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.398 0.602 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.126 0.874 35 H 0.269 0.731 36 H 0.116 0.884 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.575 -13.330 19.450 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.003 3.997 3 H 0.116 0.884 4 C 0.000 4.000 5 F -0.194 7.194 6 N -0.390 5.390 7 C 0.299 3.701 8 O -0.392 6.392 9 C -0.119 4.119 10 C -0.171 4.171 11 C -0.075 4.075 12 C -0.252 4.252 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.192 1.192 23 C -0.211 4.211 24 C -0.078 4.078 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.232 0.768 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.971 -12.218 19.016 22.797 hybrid contribution 0.993 -0.029 -0.023 0.994 sum -1.978 -12.247 18.993 22.685 Atomic orbital electron populations 1.22108 0.94101 1.02457 1.03442 1.21512 0.95113 0.98716 0.84310 0.88418 1.22349 0.76170 1.02484 0.99006 1.92803 1.30798 1.98034 1.97766 1.46082 1.69385 1.13939 1.09584 1.21079 0.77152 0.87677 0.84205 1.90743 1.48014 1.15891 1.84572 1.20405 1.02527 0.97902 0.91092 1.18631 0.95914 1.03771 0.98826 1.20516 0.96375 0.94719 0.95862 1.21107 1.00321 1.04606 0.99121 1.19385 0.93302 0.88739 0.88255 1.83975 1.34382 1.48210 1.41650 1.21334 0.87974 1.26884 1.10508 0.89088 1.25284 0.99291 0.97112 0.94864 1.70040 1.30275 1.35923 1.13689 0.85715 0.80176 0.78581 0.78977 1.19903 1.20287 1.19196 1.20150 0.97855 1.01241 1.01880 1.20390 0.96390 0.97030 0.93982 0.91009 0.92188 0.91420 0.89380 0.90296 0.76780 0.88967 0.88953 0.87818 0.85594 0.92077 0.86568 0.87426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.48 37.16 0.35 -0.88 16 2 C 0.11 0.96 2.94 -67.92 -0.20 0.76 16 3 H 0.10 1.12 7.58 -51.93 -0.39 0.72 16 4 C 0.06 0.34 7.05 37.16 0.26 0.60 16 5 F -0.21 -2.07 17.28 2.25 0.04 -2.03 16 6 N -0.74 -7.10 5.00 -53.79 -0.27 -7.37 16 7 C 0.51 7.07 7.79 -10.98 -0.09 6.99 16 8 O -0.52 -9.74 15.70 5.56 0.09 -9.66 16 9 C -0.08 -1.01 5.83 -29.03 -0.17 -1.18 16 10 C -0.17 -3.03 4.38 -104.58 -0.46 -3.49 16 11 C -0.06 -1.10 9.69 -39.61 -0.38 -1.49 16 12 C -0.23 -5.33 9.17 -39.39 -0.36 -5.70 16 13 C 0.16 3.97 6.65 -39.11 -0.26 3.71 16 14 O -0.18 -5.28 9.76 0.05 0.00 -5.28 16 15 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 16 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 19 Si 0.94 21.02 29.55 -169.99 -5.02 16.00 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 23 C -0.19 -4.27 9.99 -39.39 -0.39 -4.67 16 24 C -0.06 -1.12 9.69 -39.60 -0.38 -1.51 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.40 2.64 8.60 -40.82 -0.35 2.29 16 31 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 32 H 0.09 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 35 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 37 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -35.30 326.30 -6.04 -41.34 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.67 Total: 4.03 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -1.88 Total: -16.81 kcal Atomic # 7 Polarization: -33.00 SS G_CDS: 0.49 Total: -32.51 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.30 -6.04 -41.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288260221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.701 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds