Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47188 * 2 1 4 4 H 1.08999 * 109.47058 * 305.00139 * 3 2 1 5 5 C 1.50696 * 109.46920 * 185.00472 * 3 2 1 6 6 H 1.08002 * 120.00157 * 239.99968 * 5 3 2 7 7 C 1.37881 * 120.00447 * 60.00039 * 5 3 2 8 8 N 1.31510 * 119.99635 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00210 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47485 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47198 * 120.00237 * 9 7 5 12 12 H 1.48498 * 109.47682 * 240.00190 * 9 7 5 13 13 N 1.46499 * 109.47014 * 65.00471 * 3 2 1 14 14 C 1.34777 * 119.99665 * 275.27733 * 13 3 2 15 15 O 1.21283 * 119.99990 * 359.71991 * 14 13 3 16 16 C 1.50698 * 119.99538 * 179.72653 * 14 13 3 17 17 C 1.52999 * 109.47004 * 179.97438 * 16 14 13 18 18 C 1.50702 * 109.47522 * 179.97438 * 17 16 14 19 19 C 1.33389 * 125.20169 * 89.99975 * 18 17 16 20 20 C 1.38416 * 114.92121 * 179.97438 * 19 18 17 21 21 C 1.33389 * 114.92425 * 359.97438 * 20 19 18 22 22 C 1.50698 * 125.20659 * 180.02562 * 21 20 19 23 23 S 1.75887 * 125.20340 * 269.70030 * 18 17 16 24 24 H 1.09001 * 109.46778 * 299.99805 * 1 2 3 25 25 H 1.08998 * 109.47035 * 59.99571 * 1 2 3 26 26 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46982 * 240.00709 * 2 1 3 28 28 H 1.08993 * 109.47720 * 120.00490 * 2 1 3 29 29 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 94.99446 * 13 3 2 31 31 H 1.09003 * 109.47112 * 299.99065 * 16 14 13 32 32 H 1.08993 * 109.47916 * 59.99687 * 16 14 13 33 33 H 1.09000 * 109.47527 * 299.99994 * 17 16 14 34 34 H 1.09007 * 109.47302 * 59.99534 * 17 16 14 35 35 H 1.08004 * 122.53742 * 359.95725 * 19 18 17 36 36 H 1.08004 * 122.54016 * 180.02562 * 20 19 18 37 37 H 1.09003 * 109.47004 * 89.99830 * 22 21 20 38 38 H 1.08998 * 109.47346 * 209.99923 * 22 21 20 39 39 H 1.08994 * 109.47113 * 330.00463 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6521 7 6 4.1433 0.8784 -1.2281 8 7 3.4061 0.3367 -2.1730 9 14 6.0048 0.8812 -1.3820 10 1 6.5988 1.5462 -0.1945 11 1 6.4969 -0.5175 -1.4633 12 1 6.3990 1.6167 -2.6104 13 7 1.6526 2.0975 1.2519 14 6 0.4332 2.6595 1.3689 15 8 -0.3414 2.6275 0.4362 16 6 0.0323 3.3278 2.6588 17 6 -1.3885 3.8797 2.5271 18 6 -1.7897 4.5475 3.8171 19 6 -1.5933 5.8338 4.1106 20 6 -2.0473 6.2231 5.3589 21 6 -2.6129 5.2532 6.0790 22 6 -3.1845 5.4195 7.4634 23 16 -2.5953 3.7518 5.1630 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8898 29 1 3.8291 -0.0611 -2.9500 30 1 2.2721 2.1230 1.9978 31 1 0.0663 2.6009 3.4704 32 1 0.7207 4.1450 2.8739 33 1 -1.4222 4.6066 1.7155 34 1 -2.0773 3.0627 2.3118 35 1 -1.1159 6.5195 3.4262 36 1 -1.9516 7.2358 5.7221 37 1 -4.2375 5.6921 7.3914 38 1 -3.0885 4.4821 8.0113 39 1 -2.6412 6.2048 7.9889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290817757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = -31.322743 kcal Electronic energy + Delta-G solvation = -19247.086255 eV Core-core repulsion = 16280.406477 eV Total energy + Delta-G solvation = -2966.679778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.14059 -38.09803 -35.21592 -33.88132 -32.35910 -31.30382 -30.58457 -27.49130 -26.38498 -23.90306 -22.98230 -22.31442 -20.11061 -19.26802 -18.85502 -17.23226 -16.81135 -15.73362 -15.33701 -15.15323 -15.01406 -14.36209 -14.08153 -13.64342 -13.42653 -13.13654 -12.82783 -12.59827 -12.47532 -12.36664 -11.73620 -11.69201 -11.56866 -11.41239 -11.23625 -10.95235 -10.94129 -10.82599 -10.64969 -10.30165 -10.15561 -9.61712 -9.04744 -8.98120 -8.54853 -8.50898 -8.45361 -7.78927 -6.11978 -4.21196 0.89847 1.51717 1.92524 2.65124 3.23458 3.31479 3.34015 3.44982 4.11749 4.38279 4.67899 4.89574 5.03070 5.14737 5.19238 5.23908 5.24647 5.37956 5.50285 5.62958 5.72133 5.84690 5.91009 6.13791 6.21379 6.24816 6.40580 6.46959 6.48147 6.67664 7.05443 7.21290 7.38718 7.48863 7.63364 7.75073 7.91783 8.19581 8.70321 8.79284 9.17511 9.46558 10.93388 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033303 B = 0.003161 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.557501 B = 8855.024550 C = 9250.140515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.049 0.951 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.551 6.551 16 C -0.137 4.137 17 C -0.033 4.033 18 C -0.163 4.163 19 C -0.142 4.142 20 C -0.137 4.137 21 C -0.191 4.191 22 C -0.080 4.080 23 S 0.093 5.907 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.098 0.902 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 8.411 16.421 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.357 5.357 14 C 0.285 3.715 15 O -0.430 6.430 16 C -0.178 4.178 17 C -0.072 4.072 18 C -0.280 4.280 19 C -0.172 4.172 20 C -0.167 4.167 21 C -0.308 4.308 22 C -0.139 4.139 23 S 0.357 5.643 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.117 0.883 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.066 6.810 15.826 20.477 hybrid contribution 1.867 1.394 -0.013 2.330 sum -9.199 8.204 15.813 20.050 Atomic orbital electron populations 1.21838 0.98362 0.97973 1.01231 1.21933 0.92611 0.99881 1.02221 1.18774 0.94149 0.89165 0.81160 0.93353 1.21283 0.90804 1.38837 1.06228 0.92081 1.24893 0.98587 0.94845 0.95421 1.69904 1.35015 1.37714 1.09350 0.86412 0.84928 0.77762 0.78101 1.19752 1.20891 1.20899 1.46506 1.14587 1.56133 1.18473 1.20330 0.82772 0.79351 0.89066 1.90668 1.51536 1.60003 1.40834 1.21695 0.97277 1.01333 0.97480 1.19882 0.95702 1.00422 0.91243 1.24600 1.05642 0.97403 1.00364 1.20106 1.03952 0.95440 0.97665 1.20049 1.01912 1.00029 0.94693 1.24455 1.08213 0.96616 1.01503 1.20301 1.00646 1.02670 0.90271 1.84312 1.58876 1.12173 1.08953 0.94286 0.93155 0.95926 0.88346 0.95101 0.92639 0.77992 0.89568 0.89259 0.89118 0.90039 0.84296 0.84659 0.90964 0.91439 0.90718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.74 2.24 -69.08 -0.15 6.59 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.71 -14.47 5.03 -54.93 -0.28 -14.74 16 14 C 0.50 9.55 6.39 -10.99 -0.07 9.47 16 15 O -0.55 -12.43 13.11 5.55 0.07 -12.35 16 16 C -0.14 -1.92 5.68 -27.88 -0.16 -2.08 16 17 C -0.03 -0.44 5.00 -27.88 -0.14 -0.58 16 18 C -0.16 -1.97 5.76 -36.00 -0.21 -2.18 16 19 C -0.14 -1.58 10.05 -41.21 -0.41 -2.00 16 20 C -0.14 -1.38 10.05 -41.21 -0.41 -1.79 16 21 C -0.19 -1.89 6.51 -36.00 -0.23 -2.13 16 22 C -0.08 -0.56 10.38 36.00 0.37 -0.19 16 23 S 0.09 1.03 23.31 -107.50 -2.51 -1.47 16 24 H 0.04 0.84 5.63 -51.93 -0.29 0.55 16 25 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 30 H 0.39 6.90 8.54 -40.82 -0.35 6.55 16 31 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.09 1.27 8.10 -51.93 -0.42 0.85 16 34 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 35 H 0.14 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 334.53 15.07 5.04 5.04 Total: -1.00 -29.81 334.53 -9.64 -39.45 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.94 Total: 6.17 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: -1.64 Total: -13.55 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.35 Total: -38.85 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.07 Total: -12.35 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.81 -9.64 -39.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290817757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.128 kcal (2) G-P(sol) polarization free energy of solvation -29.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds