Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47035 * 2 1 4 4 N 1.46506 * 109.46743 * 119.99923 * 2 1 3 5 5 C 1.46501 * 120.00027 * 122.47374 * 4 2 1 6 6 C 1.50700 * 109.46644 * 269.72080 * 5 4 2 7 7 C 1.33393 * 125.20343 * 90.00007 * 6 5 4 8 8 C 1.38419 * 114.92061 * 179.97438 * 7 6 5 9 9 C 1.33389 * 114.92291 * 0.02562 * 8 7 6 10 10 S 1.75878 * 125.20361 * 269.69282 * 6 5 4 11 11 C 1.34777 * 119.99965 * 302.19555 * 4 2 1 12 12 O 1.21287 * 119.99933 * 355.58862 * 11 4 2 13 13 C 1.50692 * 120.00035 * 175.59687 * 11 4 2 14 14 C 1.53001 * 109.47109 * 184.25663 * 13 11 4 15 15 C 1.50700 * 109.47306 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00034 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00117 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00095 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99843 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47135 * 90.00040 * 19 17 15 21 21 H 1.48497 * 109.47256 * 209.99975 * 19 17 15 22 22 H 1.48503 * 109.47076 * 330.00071 * 19 17 15 23 23 H 1.08996 * 109.47446 * 295.87086 * 1 2 3 24 24 H 1.09003 * 109.46654 * 55.87458 * 1 2 3 25 25 H 1.08997 * 109.46822 * 175.87014 * 1 2 3 26 26 H 1.09000 * 109.47208 * 239.99654 * 2 1 3 27 27 H 1.09003 * 109.46921 * 184.61598 * 3 2 1 28 28 H 1.08998 * 109.47347 * 304.61919 * 3 2 1 29 29 H 1.09002 * 109.47521 * 64.61971 * 3 2 1 30 30 H 1.08995 * 109.46906 * 29.72126 * 5 4 2 31 31 H 1.08992 * 109.46952 * 149.72363 * 5 4 2 32 32 H 1.08001 * 122.53885 * 359.95754 * 7 6 5 33 33 H 1.08004 * 122.53676 * 180.02562 * 8 7 6 34 34 H 1.07999 * 125.20015 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.46872 * 304.25260 * 13 11 4 36 36 H 1.08999 * 109.47553 * 64.25659 * 13 11 4 37 37 H 1.09000 * 109.46924 * 299.99564 * 14 13 11 38 38 H 1.08993 * 109.47562 * 59.99819 * 14 13 11 39 39 H 0.97003 * 119.99831 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.9047 -1.8494 1.0626 6 6 2.0787 -3.1076 0.9882 7 6 1.6142 -3.6573 -0.1350 8 6 0.8779 -4.8157 0.0438 9 6 0.7438 -5.2065 1.3121 10 16 1.5859 -4.0801 2.3684 11 6 1.6566 -0.2565 2.4198 12 8 0.9929 0.7523 2.5337 13 6 2.0767 -1.0244 3.6465 14 6 1.4519 -0.3844 4.8878 15 6 1.8716 -1.1527 6.1144 16 1 2.5189 -2.0118 6.0182 17 6 1.4292 -0.7588 7.3594 18 7 0.6414 0.2878 7.4766 19 14 1.9489 -1.7116 8.8798 20 1 3.2071 -1.1358 9.4188 21 1 0.8824 -1.6212 9.9092 22 1 2.1703 -3.1353 8.5201 23 1 -0.3634 0.4484 0.9246 24 1 -0.3633 0.5766 -0.8508 25 1 -0.3633 -1.0250 -0.0740 26 1 1.8934 -0.5139 -0.8899 27 1 3.1269 1.4436 -0.0827 28 1 1.6107 1.9797 -0.8457 29 1 1.7459 1.9319 0.9285 30 1 3.4980 -1.7500 0.1537 31 1 3.5681 -1.9008 1.9258 32 1 1.7985 -3.2308 -1.1099 33 1 0.4447 -5.3618 -0.7812 34 1 0.2051 -6.0833 1.6397 35 1 1.7395 -2.0575 3.5616 36 1 3.1630 -1.0028 3.7343 37 1 1.7891 0.6487 4.9726 38 1 0.3657 -0.4059 4.8000 39 1 0.3304 0.5651 8.3526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291700191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = -12.433546 kcal Electronic energy + Delta-G solvation = -20250.675449 eV Core-core repulsion = 17284.814768 eV Total energy + Delta-G solvation = -2965.860681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.87557 -37.76830 -35.72116 -33.78185 -32.85815 -30.71404 -29.69260 -26.98697 -26.04974 -25.61378 -23.14485 -22.56842 -20.62369 -19.23436 -18.40448 -17.27681 -16.72670 -15.96744 -15.68935 -15.42248 -14.73781 -14.40550 -13.75768 -13.51468 -13.33982 -13.21457 -12.88953 -12.72059 -12.58712 -12.32867 -12.17138 -11.90251 -11.56571 -11.54759 -11.17459 -11.04889 -10.96030 -10.82638 -10.61977 -10.47463 -9.88402 -9.58620 -9.11401 -8.88923 -8.69424 -8.44538 -8.35074 -8.26709 -5.94041 -3.98013 1.00174 1.72216 2.10176 2.70055 3.21743 3.34438 3.37721 3.41162 3.43956 4.48651 4.75931 4.86388 5.01150 5.08258 5.25294 5.34658 5.41091 5.44314 5.50956 5.54987 5.58322 5.79699 5.81161 5.98298 6.07653 6.08924 6.19352 6.22272 6.28915 6.45763 6.49337 6.52369 6.87847 6.94998 7.75202 7.76564 7.88040 8.08859 8.40834 8.76997 9.09993 9.65310 11.16934 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.015032 B = 0.005948 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.222369 B = 4705.968262 C = 6125.746253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.148 3.852 3 C -0.170 4.170 4 N -0.617 5.617 5 C 0.182 3.818 6 C -0.202 4.202 7 C -0.129 4.129 8 C -0.142 4.142 9 C -0.225 4.225 10 S 0.144 5.856 11 C 0.515 3.485 12 O -0.522 6.522 13 C -0.134 4.134 14 C 0.040 3.960 15 C -0.524 4.524 16 H 0.055 0.945 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.025 0.975 38 H 0.022 0.978 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 -8.109 -18.137 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.045 3.955 3 C -0.228 4.228 4 N -0.352 5.352 5 C 0.057 3.943 6 C -0.321 4.321 7 C -0.161 4.161 8 C -0.173 4.173 9 C -0.361 4.361 10 S 0.409 5.591 11 C 0.305 3.695 12 O -0.397 6.397 13 C -0.174 4.174 14 C 0.002 3.998 15 C -0.563 4.563 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.198 1.198 23 H 0.100 0.900 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.462 -7.345 -16.358 18.262 hybrid contribution -0.080 -0.860 -0.754 1.147 sum 3.382 -8.206 -17.112 19.276 Atomic orbital electron populations 1.22191 0.95118 1.01751 1.03653 1.20905 0.94635 0.93053 0.86895 1.22231 1.00415 0.96305 1.03824 1.48353 1.50571 1.29992 1.06333 1.19939 0.90035 0.80344 1.03974 1.25112 1.07966 1.02508 0.96555 1.20019 1.00692 0.96822 0.98584 1.20078 1.02353 0.98067 0.96794 1.25862 1.07939 1.05039 0.97255 1.85007 1.48576 1.16941 1.08584 1.21472 0.78726 0.85097 0.84176 1.90599 1.38055 1.25015 1.86037 1.22065 1.01790 0.99583 0.93923 1.18877 0.96371 0.96091 0.88423 1.21198 1.30245 1.13315 0.91509 0.92652 1.25003 0.95126 0.95122 0.99012 1.69997 1.33905 1.25210 1.23728 0.86632 0.78234 0.80372 0.82985 1.20672 1.21239 1.19837 0.90044 0.92365 0.93007 0.90574 0.93106 0.92331 0.89923 0.88849 0.88888 0.84835 0.84849 0.82247 0.90408 0.90377 0.95700 0.95940 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 9.15 37.16 0.34 -2.02 16 2 C 0.15 1.92 3.27 -67.93 -0.22 1.70 16 3 C -0.17 -2.22 9.21 37.16 0.34 -1.88 16 4 N -0.62 -9.14 2.41 -167.47 -0.40 -9.55 16 5 C 0.18 2.17 5.61 -5.19 -0.03 2.14 16 6 C -0.20 -2.51 6.03 -36.00 -0.22 -2.73 16 7 C -0.13 -1.42 10.05 -41.21 -0.41 -1.83 16 8 C -0.14 -1.53 10.18 -41.21 -0.42 -1.95 16 9 C -0.22 -2.61 11.23 29.04 0.33 -2.28 16 10 S 0.14 1.99 20.64 -107.50 -2.22 -0.23 16 11 C 0.51 10.04 7.05 -10.99 -0.08 9.97 16 12 O -0.52 -11.95 12.16 5.55 0.07 -11.88 16 13 C -0.13 -2.78 4.21 -27.89 -0.12 -2.90 16 14 C 0.04 1.08 4.27 -27.88 -0.12 0.96 16 15 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.08 1.43 6.05 -51.93 -0.31 1.12 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.78 7.81 -51.93 -0.41 0.37 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.38 6.07 -51.93 -0.32 1.06 16 30 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 31 H 0.09 1.10 6.59 -51.93 -0.34 0.76 16 32 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.08 1.53 4.97 -50.24 -0.25 1.28 16 36 H 0.08 1.50 7.48 -51.93 -0.39 1.11 16 37 H 0.02 0.73 8.05 -51.93 -0.42 0.31 16 38 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 330.08 15.07 4.97 4.97 Total: -1.00 -32.89 330.08 -8.65 -41.54 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.77 Total: -0.44 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -1.02 Total: -14.39 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.33 Total: -36.26 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.07 Total: -11.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.22 Total: -0.23 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.89 -8.65 -41.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291700191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.106 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds