Wall clock time and date at job start Tue Mar 31 2020 05:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46822 * 2 1 4 4 H 1.08999 * 109.46803 * 304.99643 * 3 2 1 5 5 O 1.45192 * 109.47577 * 64.99891 * 3 2 1 6 6 C 1.34231 * 117.00225 * 270.00053 * 5 3 2 7 7 O 1.20824 * 119.99925 * 0.02562 * 6 5 3 8 8 C 1.50699 * 120.00079 * 179.97438 * 6 5 3 9 9 C 1.53000 * 109.47185 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47185 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99894 * 0.02562 * 10 9 8 12 12 C 1.37874 * 120.00050 * 179.97438 * 10 9 8 13 13 N 1.31518 * 120.00025 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99909 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47255 * 89.99833 * 14 12 10 16 16 H 1.48504 * 109.47002 * 209.99281 * 14 12 10 17 17 H 1.48499 * 109.47068 * 329.99365 * 14 12 10 18 18 C 1.50701 * 109.47129 * 185.00253 * 3 2 1 19 19 C 1.38233 * 119.59210 * 124.97608 * 18 3 2 20 20 C 1.38588 * 119.18738 * 180.02562 * 19 18 3 21 21 C 1.38878 * 118.40559 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.44900 * 180.02562 * 21 20 19 23 23 C 1.38421 * 119.10832 * 0.02562 * 21 20 19 24 24 N 1.31848 * 119.58747 * 304.99765 * 18 3 2 25 25 H 1.09002 * 109.47588 * 60.00353 * 1 2 3 26 26 H 1.09004 * 109.47119 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47215 * 299.99771 * 1 2 3 28 28 H 1.08998 * 109.46804 * 239.99716 * 2 1 3 29 29 H 1.08999 * 109.47089 * 119.99624 * 2 1 3 30 30 H 1.08999 * 109.47317 * 300.00577 * 8 6 5 31 31 H 1.09001 * 109.46922 * 60.00381 * 8 6 5 32 32 H 1.09000 * 109.47048 * 300.00453 * 9 8 6 33 33 H 1.09001 * 109.46780 * 60.00416 * 9 8 6 34 34 H 0.97005 * 120.00112 * 180.02562 * 13 12 10 35 35 H 1.07997 * 120.40675 * 0.03996 * 19 18 3 36 36 H 1.08003 * 120.80108 * 179.97438 * 20 19 18 37 37 H 1.08001 * 119.64084 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 8 1.6558 2.0918 1.2406 6 6 0.4726 2.7255 1.2559 7 8 -0.2194 2.7370 0.2655 8 6 0.0069 3.4217 2.5086 9 6 -1.3613 4.0596 2.2590 10 6 -1.8273 4.7553 3.5119 11 1 -1.2093 4.7440 4.3975 12 6 -3.0422 5.4070 3.5273 13 7 -3.4491 6.0137 4.6209 14 14 -4.1108 5.4271 1.9953 15 1 -5.0209 4.2538 2.0111 16 1 -4.9138 6.6760 1.9682 17 1 -3.2473 5.3675 0.7886 18 6 3.5418 1.4444 -0.1239 19 6 4.1420 2.1627 -1.1412 20 6 5.5237 2.1581 -1.2476 21 6 6.2554 1.4271 -0.3207 22 9 7.6044 1.3944 -0.3855 23 6 5.5838 0.7325 0.6705 24 7 4.2671 0.7606 0.7391 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 -0.0720 2.6972 3.3191 31 1 0.7238 4.1960 2.7819 32 1 -1.2819 4.7842 1.4486 33 1 -2.0784 3.2856 1.9855 34 1 -4.3040 6.4720 4.6319 35 1 3.5414 2.7207 -1.8442 36 1 6.0198 2.7098 -2.0325 37 1 6.1442 0.1616 1.3961 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291901073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:34 Heat of formation + Delta-G solvation = -110.087054 kcal Electronic energy + Delta-G solvation = -21343.945514 eV Core-core repulsion = 17807.637083 eV Total energy + Delta-G solvation = -3536.308431 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.36871 -40.90296 -39.94848 -36.60440 -33.93485 -33.55563 -32.90803 -31.38175 -31.35171 -27.29364 -26.08844 -24.43171 -22.99543 -22.33227 -20.88292 -19.80392 -18.08565 -17.87902 -17.35457 -17.18496 -16.50346 -16.23083 -16.11799 -15.21969 -14.52085 -14.32287 -14.15654 -14.06695 -13.89668 -13.73520 -13.29861 -12.85660 -12.71902 -12.60584 -12.15614 -11.96545 -11.55372 -11.43087 -11.04110 -10.88258 -10.43898 -10.35700 -10.27387 -10.17078 -10.03892 -9.83791 -9.67358 -9.28459 -9.25311 -8.56410 -6.07737 -4.07681 0.40815 0.68615 2.66068 2.80601 3.33323 3.37729 3.40498 3.48755 3.57102 3.86946 4.17253 4.32804 4.41440 4.45255 4.79457 4.88171 5.00597 5.07960 5.22527 5.26914 5.40309 5.41623 5.49448 5.62384 5.75809 5.91543 5.98986 5.99803 6.10964 6.19674 6.35658 6.49396 6.77911 7.22613 7.30109 7.45688 7.70145 8.19143 8.46569 8.94886 9.53868 11.04903 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028187 B = 0.003410 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.125980 B = 8209.732054 C = 8592.996047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.139 3.861 4 H 0.100 0.900 5 O -0.346 6.346 6 C 0.458 3.542 7 O -0.506 6.506 8 C -0.096 4.096 9 C -0.001 4.001 10 C -0.527 4.527 11 H 0.075 0.925 12 C 0.071 3.929 13 N -0.900 5.900 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.262 1.262 18 C 0.120 3.880 19 C -0.126 4.126 20 C -0.108 4.108 21 C 0.049 3.951 22 F -0.130 7.130 23 C 0.078 3.922 24 N -0.429 5.429 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.025 0.975 33 H 0.022 0.978 34 H 0.264 0.736 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.239 -11.468 -12.799 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.168 4.168 3 C 0.084 3.916 4 H 0.118 0.882 5 O -0.263 6.263 6 C 0.302 3.698 7 O -0.393 6.393 8 C -0.133 4.133 9 C -0.038 4.038 10 C -0.565 4.565 11 H 0.093 0.907 12 C -0.131 4.131 13 N -0.539 5.539 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.018 4.018 19 C -0.146 4.146 20 C -0.135 4.135 21 C 0.028 3.972 22 F -0.108 7.108 23 C -0.082 4.082 24 N -0.137 5.137 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.044 0.956 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.167 0.833 36 H 0.169 0.831 37 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 17.505 -11.833 -12.385 24.491 hybrid contribution 0.134 0.560 -1.502 1.609 sum 17.638 -11.272 -13.887 25.120 Atomic orbital electron populations 1.21857 0.94275 1.01590 1.03228 1.21879 0.97105 0.94275 1.03516 1.21387 0.87450 0.94976 0.87827 0.88189 1.86717 1.38487 1.63801 1.37325 1.24744 0.78051 0.75182 0.91855 1.90611 1.54659 1.57878 1.36196 1.21557 1.00844 0.99674 0.91267 1.19473 0.90049 0.96091 0.98188 1.21037 1.04584 1.33415 0.97469 0.90671 1.24958 0.97519 0.94613 0.96030 1.69908 1.21365 1.35235 1.27380 0.86801 0.80797 0.77546 0.84423 1.20159 1.21351 1.18590 1.21039 0.95475 0.93693 0.91596 1.21949 0.94356 0.98773 0.99515 1.21654 0.94247 0.98589 0.98990 1.18888 0.78043 1.01401 0.98911 1.91533 1.28347 1.95010 1.95932 1.22999 0.90493 0.97902 0.96793 1.67542 1.05709 1.16649 1.23836 0.91846 0.92583 0.92351 0.90791 0.89877 0.88296 0.88410 0.95627 0.96007 0.92600 0.83333 0.83141 0.81220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.56 37.16 0.32 -1.67 16 2 C -0.13 -1.54 5.45 -26.73 -0.15 -1.69 16 3 C 0.14 1.81 2.58 -27.88 -0.07 1.74 16 4 H 0.10 1.27 6.88 -51.93 -0.36 0.91 16 5 O -0.35 -5.51 9.81 -39.26 -0.39 -5.89 16 6 C 0.46 8.24 6.41 36.01 0.23 8.47 16 7 O -0.51 -9.95 13.12 -18.75 -0.25 -10.19 16 8 C -0.10 -1.86 5.75 -27.88 -0.16 -2.02 16 9 C 0.00 -0.01 3.33 -27.88 -0.09 -0.11 16 10 C -0.53 -14.79 9.66 -34.44 -0.33 -15.12 16 11 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 14 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 18 C 0.12 1.38 5.82 -82.59 -0.48 0.90 16 19 C -0.13 -1.14 9.71 -39.45 -0.38 -1.52 16 20 C -0.11 -0.86 10.16 -39.22 -0.40 -1.26 16 21 C 0.05 0.44 7.35 -39.28 -0.29 0.15 16 22 F -0.13 -1.17 17.28 2.25 0.04 -1.13 16 23 C 0.08 0.74 11.17 -17.47 -0.20 0.54 16 24 N -0.43 -5.10 9.97 -9.42 -0.09 -5.20 16 25 H 0.06 0.86 7.80 -51.93 -0.40 0.45 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.90 6.06 -51.93 -0.31 0.59 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 30 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 31 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 32 H 0.03 0.63 7.16 -51.93 -0.37 0.26 16 33 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 35 H 0.15 1.02 7.95 -52.49 -0.42 0.61 16 36 H 0.15 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.17 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 320.23 15.07 4.83 4.83 Total: -1.00 -32.19 320.23 -6.65 -38.84 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -4.80 Total: -2.15 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.10 Total: -9.63 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.68 Total: -31.96 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.63 Total: -16.09 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.19 -6.65 -38.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.245 kcal (2) G-P(sol) polarization free energy of solvation -32.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds