Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 H 1.08993 * 109.47278 * 54.99900 * 3 2 1 5 5 O 1.45201 * 109.46934 * 294.99468 * 3 2 1 6 6 C 1.34222 * 117.00137 * 90.00375 * 5 3 2 7 7 O 1.20833 * 119.99852 * 0.02562 * 6 5 3 8 8 C 1.50696 * 120.00432 * 179.71953 * 6 5 3 9 9 C 1.52996 * 109.47298 * 180.27351 * 8 6 5 10 10 C 1.50701 * 109.46972 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00292 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00289 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99508 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00323 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47213 * 60.00237 * 14 12 10 16 16 H 1.48502 * 109.47317 * 180.02562 * 14 12 10 17 17 H 1.48492 * 109.47189 * 300.00073 * 14 12 10 18 18 C 1.50704 * 109.46771 * 175.00063 * 3 2 1 19 19 C 1.38230 * 119.59105 * 124.99887 * 18 3 2 20 20 C 1.38600 * 119.18660 * 179.97438 * 19 18 3 21 21 C 1.38878 * 118.40037 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.44163 * 179.97438 * 21 20 19 23 23 C 1.38426 * 119.11358 * 359.97438 * 21 20 19 24 24 N 1.31849 * 119.58510 * 304.72465 * 18 3 2 25 25 H 1.09002 * 109.47320 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47473 * 300.00217 * 1 2 3 27 27 H 1.09001 * 109.46626 * 60.00747 * 1 2 3 28 28 H 1.09002 * 109.47135 * 239.99460 * 2 1 3 29 29 H 1.09001 * 109.46380 * 119.99745 * 2 1 3 30 30 H 1.09000 * 109.47190 * 300.28287 * 8 6 5 31 31 H 1.09006 * 109.46468 * 60.27870 * 8 6 5 32 32 H 1.08994 * 109.47515 * 300.00215 * 9 8 6 33 33 H 1.09006 * 109.46938 * 60.00806 * 9 8 6 34 34 H 0.96999 * 119.99800 * 180.02562 * 13 12 10 35 35 H 1.07993 * 120.40826 * 0.02562 * 19 18 3 36 36 H 1.07995 * 120.79463 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.63345 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 8 1.6559 2.0916 -1.2408 6 6 0.4728 2.7253 -1.2562 7 8 -0.2189 2.7377 -0.2655 8 6 0.0101 3.4272 -2.5068 9 6 -1.3558 4.0691 -2.2558 10 6 -1.8181 4.7715 -3.5064 11 1 -1.1998 4.7609 -4.3918 12 6 -3.0306 5.4279 -3.5203 13 7 -3.7834 5.4413 -2.4420 14 14 -3.6040 6.2980 -5.0706 15 1 -3.7158 5.3146 -6.1777 16 1 -4.9292 6.9221 -4.8266 17 1 -2.6227 7.3495 -5.4398 18 6 3.5419 1.4443 0.1238 19 6 4.3039 2.1056 -0.8210 20 6 5.6845 2.1023 -0.6987 21 6 6.2508 1.4292 0.3760 22 9 7.5921 1.3991 0.5349 23 6 5.4226 0.7895 1.2821 24 7 4.1124 0.8195 1.1351 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3632 0.5137 -0.8901 28 1 1.8934 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8901 30 1 0.7303 4.1994 -2.7777 31 1 -0.0714 2.7053 -3.3195 32 1 -2.0759 3.2969 -1.9851 33 1 -1.2742 4.7910 -1.4432 34 1 -4.6366 5.9027 -2.4519 35 1 3.8293 2.6193 -1.6439 36 1 6.3048 2.6110 -1.4217 37 1 5.8540 0.2639 2.1211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291901074.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = -113.321758 kcal Electronic energy + Delta-G solvation = -21306.783084 eV Core-core repulsion = 17770.334385 eV Total energy + Delta-G solvation = -3536.448698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.29080 -40.86266 -39.88107 -36.56991 -33.90891 -33.56260 -32.73440 -31.27917 -31.11878 -27.11332 -25.79977 -24.32130 -22.94658 -22.45974 -20.97461 -19.87077 -18.01239 -17.79839 -17.17210 -17.03432 -16.27279 -16.10254 -16.05500 -15.15177 -14.52477 -14.34490 -14.18207 -14.16213 -13.86767 -13.61935 -13.19555 -12.76974 -12.52260 -12.28168 -12.13600 -11.85629 -11.40408 -11.25111 -10.97527 -10.86111 -10.69649 -10.43237 -10.25143 -10.09153 -9.94835 -9.84421 -9.60485 -9.22806 -9.09284 -8.40419 -6.04406 -4.09603 0.54749 0.77186 2.72057 2.78791 3.25149 3.30699 3.35780 3.37354 3.68924 4.04235 4.29322 4.40532 4.41846 4.58204 4.86734 4.94045 5.15571 5.18733 5.31078 5.37389 5.47644 5.59595 5.65308 5.71636 5.82302 6.00248 6.05404 6.09380 6.19835 6.26407 6.45507 6.60063 6.87260 7.46250 7.62511 7.69248 7.94416 8.19661 8.35198 8.97231 9.54665 11.06457 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.003267 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.419495 B = 8567.447694 C = 9294.525131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.139 3.861 4 H 0.106 0.894 5 O -0.361 6.361 6 C 0.458 3.542 7 O -0.495 6.495 8 C -0.103 4.103 9 C 0.034 3.966 10 C -0.531 4.531 11 H 0.058 0.942 12 C 0.060 3.940 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.122 3.878 19 C -0.120 4.120 20 C -0.107 4.107 21 C 0.042 3.958 22 F -0.131 7.131 23 C 0.078 3.922 24 N -0.449 5.449 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.026 0.974 33 H 0.026 0.974 34 H 0.263 0.737 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.597 -9.924 4.542 21.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.083 3.917 4 H 0.124 0.876 5 O -0.279 6.279 6 C 0.301 3.699 7 O -0.380 6.380 8 C -0.140 4.140 9 C -0.003 4.003 10 C -0.569 4.569 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.527 5.527 14 Si 0.723 3.277 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.015 4.015 19 C -0.139 4.139 20 C -0.134 4.134 21 C 0.020 3.980 22 F -0.110 7.110 23 C -0.081 4.081 24 N -0.158 5.158 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.176 0.824 36 H 0.168 0.832 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.723 -10.282 5.559 21.230 hybrid contribution 0.505 0.924 -1.271 1.650 sum 18.227 -9.358 4.288 20.933 Atomic orbital electron populations 1.21855 0.94143 1.01562 1.03355 1.21873 0.97268 0.93810 1.03432 1.21081 0.88095 0.94962 0.87603 0.87594 1.86542 1.39284 1.64507 1.37560 1.24762 0.77782 0.75283 0.92058 1.90654 1.54247 1.57113 1.35987 1.21792 1.02055 0.99195 0.90988 1.19011 0.87769 0.95989 0.97540 1.21109 1.04047 1.33897 0.97815 0.92382 1.25014 0.96632 0.96323 0.96291 1.69978 1.12097 1.42806 1.27814 0.86608 0.77922 0.79862 0.83302 1.20150 1.21250 1.20168 1.20962 0.95766 0.93978 0.90839 1.22015 0.92626 0.98758 1.00533 1.21741 0.95966 0.98472 0.97206 1.18845 0.78303 1.02391 0.98437 1.91525 1.29227 1.94912 1.95350 1.22834 0.88382 0.98150 0.98696 1.67294 1.11079 1.16621 1.20811 0.92622 0.91611 0.92457 0.91262 0.89439 0.88960 0.88908 0.95514 0.95574 0.92758 0.82425 0.83223 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.57 37.16 0.32 -1.80 16 2 C -0.13 -1.57 5.57 -26.73 -0.15 -1.72 16 3 C 0.14 1.89 2.74 -27.88 -0.08 1.82 16 4 H 0.11 1.60 7.16 -51.93 -0.37 1.23 16 5 O -0.36 -5.40 8.28 -39.24 -0.32 -5.73 16 6 C 0.46 8.31 6.41 36.00 0.23 8.54 16 7 O -0.49 -10.34 13.13 -18.76 -0.25 -10.59 16 8 C -0.10 -1.97 5.75 -27.89 -0.16 -2.13 16 9 C 0.03 0.86 4.26 -27.88 -0.12 0.75 16 10 C -0.53 -14.45 9.11 -34.44 -0.31 -14.76 16 11 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 14 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 C 0.12 1.49 6.17 -82.59 -0.51 0.98 16 19 C -0.12 -1.28 9.41 -39.45 -0.37 -1.65 16 20 C -0.11 -0.98 10.16 -39.21 -0.40 -1.38 16 21 C 0.04 0.40 7.35 -39.28 -0.29 0.11 16 22 F -0.13 -1.25 17.28 2.25 0.04 -1.21 16 23 C 0.08 0.75 11.17 -17.46 -0.20 0.56 16 24 N -0.45 -5.26 9.79 -9.42 -0.09 -5.35 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.98 7.80 -51.93 -0.40 0.58 16 27 H 0.06 0.92 6.06 -51.93 -0.31 0.60 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.01 7.80 -51.93 -0.41 0.60 16 30 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 31 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.03 0.74 8.10 -51.93 -0.42 0.31 16 33 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.16 1.59 6.99 -52.49 -0.37 1.22 16 36 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 321.50 15.07 4.84 4.84 Total: -1.00 -30.80 321.50 -6.98 -37.78 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.78 Total: -0.89 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.13 Total: -9.11 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.64 Total: -31.15 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.57 Total: -16.32 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.80 -6.98 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291901074.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.544 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds