Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46694 * 2 1 4 4 O 1.42898 * 109.47167 * 119.99336 * 2 1 3 5 5 C 1.50696 * 109.47120 * 239.99937 * 2 1 3 6 6 C 1.38132 * 119.97728 * 264.71849 * 5 2 1 7 7 C 1.38825 * 119.95722 * 179.76977 * 6 5 2 8 8 N 1.40034 * 120.04768 * 180.23399 * 7 6 5 9 9 C 1.34774 * 119.99756 * 213.56173 * 8 7 6 10 10 O 1.21295 * 120.00376 * 5.27471 * 9 8 7 11 11 C 1.50707 * 119.99768 * 185.27177 * 9 8 7 12 12 C 1.52998 * 109.46991 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.46991 * 179.97438 * 12 11 9 14 14 H 1.08003 * 119.99485 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99914 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99819 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00157 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.46989 * 89.99993 * 17 15 13 19 19 H 1.48494 * 109.47183 * 209.99919 * 17 15 13 20 20 H 1.48494 * 109.47131 * 330.00196 * 17 15 13 21 21 C 1.38874 * 119.91066 * 0.51076 * 7 6 5 22 22 C 1.38097 * 119.95215 * 359.74390 * 21 7 6 23 23 C 1.38457 * 119.97729 * 84.99831 * 5 2 1 24 24 F 1.35092 * 119.95642 * 359.97438 * 23 5 2 25 25 H 1.08999 * 109.47032 * 299.99903 * 1 2 3 26 26 H 1.09000 * 109.46912 * 60.00629 * 1 2 3 27 27 H 1.09003 * 109.46715 * 180.02562 * 1 2 3 28 28 H 0.96700 * 113.99525 * 60.00362 * 4 2 1 29 29 H 1.08003 * 120.02067 * 0.02562 * 6 5 2 30 30 H 0.96993 * 119.99735 * 33.56076 * 8 7 6 31 31 H 1.08998 * 109.47478 * 300.00276 * 11 9 8 32 32 H 1.09002 * 109.46648 * 60.00340 * 11 9 8 33 33 H 1.08998 * 109.47507 * 299.99984 * 12 11 9 34 34 H 1.09002 * 109.46972 * 60.00752 * 12 11 9 35 35 H 0.97007 * 120.00272 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.02403 * 179.72350 * 21 7 6 37 37 H 1.07998 * 119.97885 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.0324 -0.7104 -1.2304 6 6 2.3663 -2.0492 -1.1664 7 6 2.8244 -2.7044 -2.3013 8 7 3.1588 -4.0629 -2.2398 9 6 4.1629 -4.5447 -2.9988 10 8 4.8388 -3.7872 -3.6625 11 6 4.4458 -6.0248 -3.0229 12 6 5.6256 -6.3034 -3.9563 13 6 5.9089 -7.7834 -3.9799 14 1 5.3072 -8.4578 -3.3886 15 6 6.9361 -8.2764 -4.7563 16 7 7.1830 -9.5679 -4.7772 17 14 7.9771 -7.1097 -5.7784 18 1 9.1379 -6.6489 -4.9748 19 1 8.4635 -7.8142 -6.9917 20 1 7.1576 -5.9387 -6.1810 21 6 2.9562 -2.0095 -3.4964 22 6 2.6263 -0.6698 -3.5550 23 6 2.1644 -0.0193 -2.4229 24 9 1.8422 1.2913 -2.4822 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.7211 -1.5951 1.2330 29 1 2.2670 -2.5870 -0.2350 30 1 2.6678 -4.6569 -1.6509 31 1 4.6901 -6.3645 -2.0164 32 1 3.5651 -6.5572 -3.3822 33 1 5.3808 -5.9639 -4.9627 34 1 6.5064 -5.7710 -3.5973 35 1 7.9054 -9.9149 -5.3238 36 1 3.3167 -2.5163 -4.3794 37 1 2.7290 -0.1288 -4.4840 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291904776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -117.527758 kcal Electronic energy + Delta-G solvation = -21191.395710 eV Core-core repulsion = 17654.764625 eV Total energy + Delta-G solvation = -3536.631084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.07051 -40.59385 -39.05490 -37.25695 -34.63968 -33.62164 -32.23468 -31.44839 -30.23352 -28.97897 -26.18998 -24.52651 -22.92775 -22.23498 -20.87190 -19.87080 -18.37739 -17.59378 -17.44165 -16.80711 -16.35567 -16.01114 -15.73585 -15.33153 -14.97712 -14.63115 -14.20496 -14.15418 -13.68073 -13.52959 -13.35772 -13.10097 -12.77403 -12.63325 -12.42657 -12.30716 -11.71730 -11.52689 -11.40825 -11.04702 -10.60558 -10.28724 -10.27093 -10.14534 -9.86755 -9.48615 -9.27031 -9.16564 -8.57376 -8.13798 -6.09250 -4.08955 0.89078 0.95701 2.75066 3.05936 3.33366 3.40456 3.42749 3.49569 3.95273 4.07403 4.15193 4.44904 4.49049 4.72222 4.76556 4.96476 5.02621 5.08784 5.26042 5.29656 5.38354 5.54393 5.56197 5.70042 5.88102 5.92609 5.93745 6.06015 6.08276 6.29789 6.53756 6.77984 7.18758 7.24796 7.31543 7.40652 7.70148 8.28116 8.45097 8.92831 9.53214 11.03419 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.033548 B = 0.003262 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.417758 B = 8580.986857 C = 9127.388908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.148 3.852 3 H 0.111 0.889 4 O -0.553 6.553 5 C -0.133 4.133 6 C -0.120 4.120 7 C 0.157 3.843 8 N -0.684 5.684 9 C 0.510 3.490 10 O -0.517 6.517 11 C -0.121 4.121 12 C 0.001 3.999 13 C -0.528 4.528 14 H 0.073 0.927 15 C 0.070 3.930 16 N -0.902 5.902 17 Si 0.877 3.123 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.261 1.261 21 C -0.096 4.096 22 C -0.127 4.127 23 C 0.079 3.921 24 F -0.141 7.141 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.375 0.625 29 H 0.134 0.866 30 H 0.412 0.588 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.020 0.980 35 H 0.264 0.736 36 H 0.148 0.852 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 17.743 8.760 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.088 3.912 3 H 0.129 0.871 4 O -0.359 6.359 5 C -0.135 4.135 6 C -0.141 4.141 7 C 0.061 3.939 8 N -0.330 5.330 9 C 0.300 3.700 10 O -0.390 6.390 11 C -0.161 4.161 12 C -0.037 4.037 13 C -0.565 4.565 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.540 5.540 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.186 1.186 21 C -0.117 4.117 22 C -0.146 4.146 23 C 0.059 3.941 24 F -0.119 7.119 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.223 0.777 29 H 0.152 0.848 30 H 0.248 0.752 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.165 0.835 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.570 18.683 8.273 25.096 hybrid contribution 0.093 -0.148 -0.468 0.500 sum -14.477 18.535 7.805 24.780 Atomic orbital electron populations 1.22466 0.94937 1.03028 1.03226 1.20678 0.93274 0.96053 0.81151 0.87116 1.86653 1.77209 1.29234 1.42846 1.20304 1.03153 0.94690 0.95322 1.20414 1.03399 0.93095 0.97181 1.17791 0.97757 0.85096 0.93223 1.43939 1.36138 1.07050 1.45842 1.21884 0.77720 0.92891 0.77479 1.90683 1.47253 1.59858 1.41254 1.21726 1.02973 0.87547 1.03806 1.19394 0.92271 0.97466 0.94570 1.21069 1.16707 0.90579 1.28192 0.90861 1.24968 0.96956 0.94964 0.96279 1.69905 1.31211 1.12235 1.40675 0.86797 0.81049 0.81612 0.80092 1.20190 1.21376 1.18574 1.21141 0.98900 0.93725 0.97900 1.21043 1.00569 0.95080 0.97936 1.17338 1.03731 0.78399 0.94634 1.91464 1.90686 1.32773 1.97017 0.91147 0.91200 0.91899 0.77707 0.84832 0.75195 0.89120 0.88984 0.95717 0.96142 0.92620 0.83480 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.52 37.16 0.35 -0.85 16 2 C 0.15 1.28 3.60 -27.88 -0.10 1.18 16 3 H 0.11 1.02 7.79 -51.93 -0.40 0.61 16 4 O -0.55 -4.94 12.98 -35.23 -0.46 -5.40 16 5 C -0.13 -1.36 5.07 -104.58 -0.53 -1.89 16 6 C -0.12 -1.20 9.22 -39.40 -0.36 -1.56 16 7 C 0.16 1.92 6.28 -83.66 -0.53 1.40 16 8 N -0.68 -8.25 5.34 -9.84 -0.05 -8.31 16 9 C 0.51 8.42 7.57 -10.98 -0.08 8.33 16 10 O -0.52 -10.47 13.67 5.54 0.08 -10.40 16 11 C -0.12 -2.13 5.64 -27.88 -0.16 -2.28 16 12 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 13 C -0.53 -14.58 9.66 -34.44 -0.33 -14.92 16 14 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 17 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.26 -6.50 6.54 56.52 0.37 -6.13 16 21 C -0.10 -1.28 8.66 -39.40 -0.34 -1.62 16 22 C -0.13 -1.48 10.02 -39.54 -0.40 -1.88 16 23 C 0.08 0.90 7.24 -39.40 -0.29 0.61 16 24 F -0.14 -1.58 16.56 2.25 0.04 -1.55 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.37 2.00 7.32 45.56 0.33 2.34 16 29 H 0.13 0.93 6.40 -52.48 -0.34 0.60 16 30 H 0.41 3.45 8.82 -40.82 -0.36 3.09 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 34 H 0.02 0.50 7.52 -51.93 -0.39 0.11 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.15 2.19 6.41 -52.49 -0.34 1.85 16 37 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 318.50 15.07 4.80 4.80 Total: -1.00 -33.84 318.50 -6.43 -40.28 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.99 Total: 1.45 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.95 Total: -11.62 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.72 Total: -34.96 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.38 Total: -15.80 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.84 -6.43 -40.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291904776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.252 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds