Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47148 * 2 1 4 4 O 1.42899 * 109.46789 * 240.00940 * 2 1 3 5 5 C 1.50698 * 109.47234 * 120.00731 * 2 1 3 6 6 C 1.38132 * 119.97692 * 95.00225 * 5 2 1 7 7 C 1.38829 * 119.95392 * 179.72322 * 6 5 2 8 8 N 1.40023 * 120.04897 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00671 * 144.91564 * 8 7 6 10 10 O 1.21291 * 119.99555 * 4.62663 * 9 8 7 11 11 C 1.50696 * 120.00438 * 184.63097 * 9 8 7 12 12 C 1.53008 * 109.47025 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47005 * 179.97438 * 12 11 9 14 14 H 1.08001 * 120.00112 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00386 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99410 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00392 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47120 * 90.00177 * 17 15 13 19 19 H 1.48501 * 109.47113 * 209.99844 * 17 15 13 20 20 H 1.48493 * 109.47134 * 330.00069 * 17 15 13 21 21 C 1.38875 * 119.90879 * 359.97438 * 7 6 5 22 22 C 1.38085 * 119.95498 * 359.97438 * 21 7 6 23 23 C 1.38456 * 119.97512 * 274.72027 * 5 2 1 24 24 F 1.35103 * 119.95323 * 0.28006 * 23 5 2 25 25 H 1.09000 * 109.47308 * 299.99608 * 1 2 3 26 26 H 1.09002 * 109.47695 * 59.99501 * 1 2 3 27 27 H 1.08999 * 109.47158 * 179.97438 * 1 2 3 28 28 H 0.96694 * 113.99982 * 299.99192 * 4 2 1 29 29 H 1.07997 * 120.02265 * 359.74126 * 6 5 2 30 30 H 0.97003 * 119.99827 * 324.91728 * 8 7 6 31 31 H 1.09001 * 109.47193 * 299.99317 * 11 9 8 32 32 H 1.08999 * 109.47609 * 60.00185 * 11 9 8 33 33 H 1.08997 * 109.46922 * 299.99316 * 12 11 9 34 34 H 1.09004 * 109.47116 * 59.99590 * 12 11 9 35 35 H 0.97002 * 120.00293 * 180.02562 * 16 15 13 36 36 H 1.08004 * 120.02055 * 180.02562 * 21 7 6 37 37 H 1.08009 * 119.97732 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6735 -1.1669 5 6 2.0323 -0.7105 1.2303 6 6 2.3607 -2.0508 1.1676 7 6 2.8289 -2.7035 2.2999 8 7 3.1620 -4.0622 2.2387 9 6 4.1922 -4.5371 2.9663 10 8 4.7777 -3.8064 3.7374 11 6 4.6169 -5.9757 2.8218 12 6 5.7997 -6.2542 3.7517 13 6 6.2239 -7.6930 3.6077 14 1 5.7025 -8.3436 2.9213 15 6 7.2785 -8.1785 4.3514 16 7 7.9138 -7.3861 5.1868 17 14 7.8049 -9.9618 4.1724 18 1 8.8315 -10.0702 3.1048 19 1 8.3745 -10.4412 5.4573 20 1 6.6273 -10.7918 3.8127 21 6 2.9666 -2.0070 3.4935 22 6 2.6382 -0.6671 3.5517 23 6 2.1699 -0.0181 2.4214 24 9 1.8481 1.2927 2.4806 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7210 -1.5950 -1.2331 29 1 2.2537 -2.5904 0.2383 30 1 2.6511 -4.6617 1.6725 31 1 3.7849 -6.6284 3.0863 32 1 4.9138 -6.1652 1.7903 33 1 6.6315 -5.6015 3.4868 34 1 5.5033 -6.0646 4.7834 35 1 8.6560 -7.7274 5.7098 36 1 3.3310 -2.5129 4.3754 37 1 2.7455 -0.1249 4.4797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291904780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = -119.893057 kcal Electronic energy + Delta-G solvation = -21124.339315 eV Core-core repulsion = 17587.605663 eV Total energy + Delta-G solvation = -3536.733651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.00697 -40.49300 -38.95843 -37.17942 -34.53011 -33.57992 -32.17917 -31.19341 -30.13071 -28.82423 -25.80929 -24.45537 -22.96917 -22.23193 -21.03813 -19.82210 -18.29389 -17.42810 -17.33761 -16.60529 -16.27159 -15.79729 -15.62564 -15.20779 -14.90509 -14.57581 -14.43806 -14.12263 -13.56287 -13.46506 -13.28337 -13.03882 -12.62251 -12.36458 -12.27427 -12.13452 -11.65343 -11.36523 -11.25951 -10.98411 -10.65992 -10.55570 -10.14627 -10.06301 -9.77219 -9.36334 -9.17083 -9.06116 -8.38989 -8.07110 -6.02420 -4.07418 0.97169 1.03235 2.88792 3.15507 3.29652 3.36265 3.38398 3.49960 4.00271 4.13794 4.21080 4.42165 4.56800 4.76794 4.81623 5.05452 5.14197 5.16757 5.32890 5.34262 5.47656 5.60658 5.63925 5.74220 5.99218 6.04514 6.06031 6.16160 6.20552 6.38909 6.74041 6.87985 7.23129 7.52853 7.66249 7.75095 7.98264 8.27933 8.46736 9.00338 9.56723 11.08462 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036164 B = 0.003021 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.074905 B = 9266.095497 C = 9801.309198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.148 3.852 3 H 0.111 0.889 4 O -0.554 6.554 5 C -0.135 4.135 6 C -0.120 4.120 7 C 0.155 3.845 8 N -0.685 5.685 9 C 0.510 3.490 10 O -0.512 6.512 11 C -0.128 4.128 12 C 0.036 3.964 13 C -0.529 4.529 14 H 0.056 0.944 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C -0.096 4.096 22 C -0.128 4.128 23 C 0.079 3.921 24 F -0.141 7.141 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.374 0.626 29 H 0.133 0.867 30 H 0.410 0.590 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.262 0.738 36 H 0.153 0.847 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 12.495 -9.587 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.089 3.911 3 H 0.129 0.871 4 O -0.360 6.360 5 C -0.137 4.137 6 C -0.141 4.141 7 C 0.059 3.941 8 N -0.332 5.332 9 C 0.300 3.700 10 O -0.385 6.385 11 C -0.168 4.168 12 C -0.001 4.001 13 C -0.568 4.568 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.116 4.116 22 C -0.148 4.148 23 C 0.059 3.941 24 F -0.120 7.120 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.223 0.777 29 H 0.151 0.849 30 H 0.246 0.754 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.071 0.929 36 H 0.170 0.830 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.895 13.567 -8.987 22.749 hybrid contribution -0.170 -1.549 -0.118 1.563 sum -16.065 12.018 -9.106 22.033 Atomic orbital electron populations 1.22463 0.95007 1.02985 1.03185 1.20670 0.93227 0.96046 0.81181 0.87140 1.86650 1.77237 1.29212 1.42860 1.20285 1.03399 0.94668 0.95300 1.20421 1.03361 0.93093 0.97213 1.17821 0.97859 0.85209 0.93172 1.43964 1.33962 1.06862 1.48381 1.21911 0.77565 0.91937 0.78591 1.90676 1.53336 1.59337 1.35120 1.21924 1.02654 0.88324 1.03916 1.18927 0.90741 0.96448 0.94015 1.21182 1.15850 0.95735 1.24011 0.92527 1.25025 0.96390 0.97752 0.95181 1.69990 1.21788 1.35442 1.25497 0.86572 0.78834 0.84946 0.77492 1.20629 1.21188 1.19858 1.21317 0.98455 0.93664 0.98184 1.21077 1.00578 0.95203 0.97926 1.17352 1.03723 0.78355 0.94700 1.91463 1.90721 1.32810 1.97015 0.91210 0.91198 0.91932 0.77734 0.84918 0.75393 0.89710 0.89685 0.95694 0.95697 0.92860 0.82967 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.52 37.16 0.35 -0.92 16 2 C 0.15 1.35 3.60 -27.89 -0.10 1.25 16 3 H 0.11 1.06 7.78 -51.93 -0.40 0.66 16 4 O -0.55 -5.18 12.99 -35.23 -0.46 -5.64 16 5 C -0.13 -1.45 5.07 -104.58 -0.53 -1.98 16 6 C -0.12 -1.27 9.22 -39.40 -0.36 -1.63 16 7 C 0.15 2.01 6.30 -83.66 -0.53 1.49 16 8 N -0.69 -8.81 5.34 -9.85 -0.05 -8.86 16 9 C 0.51 8.98 7.67 -10.99 -0.08 8.90 16 10 O -0.51 -11.07 13.42 5.55 0.07 -10.99 16 11 C -0.13 -2.39 5.64 -27.88 -0.16 -2.55 16 12 C 0.04 0.93 4.26 -27.88 -0.12 0.81 16 13 C -0.53 -14.53 9.11 -34.44 -0.31 -14.85 16 14 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.10 -1.35 8.70 -39.40 -0.34 -1.70 16 22 C -0.13 -1.59 10.02 -39.54 -0.40 -1.99 16 23 C 0.08 0.94 7.24 -39.41 -0.29 0.65 16 24 F -0.14 -1.66 16.56 2.25 0.04 -1.63 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.37 2.16 7.32 45.56 0.33 2.49 16 29 H 0.13 1.00 6.41 -52.49 -0.34 0.66 16 30 H 0.41 3.70 8.82 -40.82 -0.36 3.34 16 31 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.15 2.43 6.22 -52.48 -0.33 2.10 16 37 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -33.65 321.83 -6.81 -40.46 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.01 Total: 2.68 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.96 Total: -10.94 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.68 Total: -34.98 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.38 Total: -16.63 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.65 -6.81 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291904780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.433 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds