Wall clock time and date at job start Tue Mar 31 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 5 5 N 1.46505 * 109.47212 * 295.00240 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00597 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99622 * 179.97438 * 6 5 4 9 9 C 1.52997 * 109.47212 * 180.02562 * 8 6 5 10 10 C 1.50697 * 109.47466 * 180.02562 * 9 8 6 11 11 H 1.08006 * 119.99920 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00428 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99996 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00227 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.46873 * 60.00019 * 14 12 10 16 16 H 1.48503 * 109.47134 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.46938 * 300.00027 * 14 12 10 18 18 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 19 19 C 1.50701 * 109.47248 * 64.99284 * 18 2 1 20 20 C 1.33390 * 125.20184 * 89.72436 * 19 18 2 21 21 C 1.38420 * 114.92242 * 179.85699 * 20 19 18 22 22 C 1.33388 * 114.92100 * 0.43155 * 21 20 19 23 23 S 1.75879 * 109.59391 * 359.76833 * 22 21 20 24 24 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 26 26 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 27 27 H 1.09002 * 109.47153 * 175.00232 * 4 2 1 28 28 H 1.09001 * 109.46832 * 55.00423 * 4 2 1 29 29 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 30 30 H 1.09001 * 109.47380 * 300.00190 * 8 6 5 31 31 H 1.09002 * 109.47060 * 60.00278 * 8 6 5 32 32 H 1.09001 * 109.47289 * 299.99918 * 9 8 6 33 33 H 1.09002 * 109.47153 * 60.00002 * 9 8 6 34 34 H 0.96993 * 120.00405 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.47698 * 184.99641 * 18 2 1 36 36 H 1.09009 * 109.47010 * 304.99646 * 18 2 1 37 37 H 1.08004 * 122.53798 * 0.02562 * 20 19 18 38 38 H 1.08001 * 122.54265 * 180.19850 * 21 20 19 39 39 H 1.07995 * 125.20432 * 179.79472 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 0.0355 2.4424 6 6 1.9956 -0.4135 3.6659 7 8 2.6257 -1.4436 3.7793 8 6 1.5974 0.3651 4.8932 9 6 2.1073 -0.3561 6.1425 10 6 1.7086 0.4221 7.3698 11 1 1.1479 1.3397 7.2689 12 6 2.0604 -0.0366 8.6215 13 7 2.7436 -1.1537 8.7444 14 14 1.5668 0.9285 10.1429 15 1 0.0869 1.0351 10.2027 16 1 2.0616 0.2284 11.3554 17 1 2.1589 2.2888 10.0798 18 6 2.0401 -0.7211 -1.2492 19 6 1.6413 0.0571 -2.4766 20 6 2.3667 1.0214 -3.0449 21 6 1.7972 1.5941 -4.1691 22 6 0.6051 1.1010 -4.5084 23 16 0.1447 -0.1620 -3.3744 24 1 -0.3633 -1.0278 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 3.1264 -0.7993 1.2056 28 1 1.6054 -1.7197 1.2951 29 1 1.1482 0.8591 2.3517 30 1 2.0327 1.3634 4.8473 31 1 0.5111 0.4441 4.9368 32 1 1.6723 -1.3545 6.1886 33 1 3.1936 -0.4347 6.0987 34 1 2.9915 -1.4763 9.6250 35 1 3.1264 -0.7993 -1.2056 36 1 1.6055 -1.7198 -1.2951 37 1 3.3270 1.3301 -2.6589 38 1 2.2796 2.3831 -4.7270 39 1 0.0134 1.4272 -5.3509 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292095161.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:20 Heat of formation + Delta-G solvation = -33.941251 kcal Electronic energy + Delta-G solvation = -18676.281702 eV Core-core repulsion = 15709.488377 eV Total energy + Delta-G solvation = -2966.793325 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.32316 -38.40460 -36.55183 -33.45829 -33.36721 -31.02672 -30.12646 -27.15071 -26.54667 -25.08788 -23.34163 -21.52533 -20.73042 -19.59069 -19.27197 -17.47445 -16.85569 -15.91437 -15.66450 -15.60558 -15.29399 -14.62168 -14.40335 -14.27707 -13.43397 -13.39022 -12.99793 -12.93391 -12.69784 -12.57714 -12.24109 -12.15528 -11.80201 -11.47075 -11.14980 -11.12634 -10.99686 -10.94507 -10.88595 -10.60043 -9.92597 -9.63958 -9.17142 -9.03404 -8.88353 -8.73357 -8.72782 -8.29723 -5.94019 -3.98451 0.69281 1.33378 1.70984 2.44451 3.30453 3.35734 3.40121 3.41779 3.59689 4.34841 4.49145 4.58680 4.75538 4.75937 4.88333 5.08688 5.25532 5.30486 5.37722 5.40627 5.50104 5.52531 5.70282 5.75704 5.77666 5.85093 5.99588 6.04605 6.08778 6.21237 6.26216 6.27764 6.77026 6.92670 7.76244 7.89064 7.93079 8.09688 8.41113 8.82694 9.10187 9.64844 11.16912 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.048976 B = 0.002379 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.573948 B =11765.510374 C =11906.191998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 H 0.080 0.920 4 C 0.124 3.876 5 N -0.743 5.743 6 C 0.509 3.491 7 O -0.536 6.536 8 C -0.130 4.130 9 C 0.037 3.963 10 C -0.527 4.527 11 H 0.055 0.945 12 C 0.057 3.943 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.045 4.045 19 C -0.162 4.162 20 C -0.144 4.144 21 C -0.132 4.132 22 C -0.222 4.222 23 S 0.098 5.902 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.396 0.604 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.721 5.198 -27.937 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.116 4.116 3 H 0.099 0.901 4 C 0.000 4.000 5 N -0.398 5.398 6 C 0.297 3.703 7 O -0.411 6.411 8 C -0.170 4.170 9 C 0.000 4.000 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.085 4.085 19 C -0.280 4.280 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.358 4.358 23 S 0.361 5.639 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.230 0.770 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.429 3.360 -27.582 28.312 hybrid contribution 0.695 1.910 0.493 2.092 sum -4.734 5.270 -27.089 28.000 Atomic orbital electron populations 1.21989 0.94483 1.02495 1.02279 1.21367 0.96810 1.00334 0.93106 0.90143 1.21262 0.99852 0.95415 0.83477 1.46199 1.59670 1.28064 1.05851 1.21548 0.78297 0.85889 0.84557 1.90667 1.39158 1.24644 1.86651 1.21861 1.01915 0.99813 0.93430 1.18889 0.97159 0.95527 0.88464 1.21193 1.35642 1.08532 0.91201 0.92675 1.25032 0.95203 0.95074 0.99113 1.69988 1.38333 1.20975 1.23572 0.86647 0.78825 0.80033 0.82386 1.20263 1.21298 1.20259 1.20181 1.01915 0.97686 0.88699 1.24486 0.98181 1.03098 1.02202 1.20160 1.02060 0.97986 0.97223 1.20176 0.95605 1.02229 0.98234 1.25629 1.01437 1.03546 1.05178 1.84377 1.20397 1.37369 1.21766 0.92322 0.92054 0.92077 0.91773 0.91739 0.76963 0.90306 0.90307 0.95852 0.95849 0.92903 0.89422 0.90253 0.84274 0.84452 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.80 37.16 0.33 -1.00 16 2 C -0.10 -0.85 2.41 -90.62 -0.22 -1.06 16 3 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 4 C 0.12 1.49 5.06 -4.04 -0.02 1.47 16 5 N -0.74 -10.33 5.28 -60.29 -0.32 -10.65 16 6 C 0.51 9.87 7.83 -10.99 -0.09 9.78 16 7 O -0.54 -12.81 15.98 5.56 0.09 -12.72 16 8 C -0.13 -2.67 5.64 -27.88 -0.16 -2.82 16 9 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 10 C -0.53 -15.10 9.11 -34.44 -0.31 -15.42 16 11 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 13 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 14 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.05 -0.36 5.18 -27.89 -0.14 -0.50 16 19 C -0.16 -1.34 5.08 -36.00 -0.18 -1.52 16 20 C -0.14 -1.15 10.05 -41.21 -0.41 -1.57 16 21 C -0.13 -0.97 10.18 -41.21 -0.42 -1.39 16 22 C -0.22 -1.61 11.23 29.04 0.33 -1.29 16 23 S 0.10 0.77 21.89 -107.50 -2.35 -1.59 16 24 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 25 H 0.06 0.53 7.18 -51.93 -0.37 0.16 16 26 H 0.06 0.50 6.17 -51.93 -0.32 0.18 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.40 4.38 7.65 -40.82 -0.31 4.07 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 38 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 340.16 15.07 5.13 5.13 Total: -1.00 -34.20 340.16 -9.30 -43.50 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.04 Total: -0.68 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -1.52 Total: -12.85 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.42 Total: -37.59 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.35 Total: -1.59 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.20 -9.30 -43.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292095161.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.563 kcal (2) G-P(sol) polarization free energy of solvation -34.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds