Wall clock time and date at job start Tue Mar 31 2020 06:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.47223 * 2 1 4 4 C 1.52992 * 109.47222 * 239.99891 * 2 1 3 5 5 N 1.46499 * 109.47267 * 65.00163 * 4 2 1 6 6 C 1.34784 * 119.99971 * 180.02562 * 5 4 2 7 7 O 1.21274 * 119.99897 * 359.72827 * 6 5 4 8 8 C 1.50695 * 119.99635 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47004 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.47331 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00042 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00130 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00039 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 89.99966 * 14 12 10 16 16 H 1.48504 * 109.46913 * 210.00216 * 14 12 10 17 17 H 1.48501 * 109.47062 * 330.00015 * 14 12 10 18 18 C 1.53001 * 109.46907 * 119.99929 * 2 1 3 19 19 C 1.50701 * 109.46966 * 294.99943 * 18 2 1 20 20 C 1.33385 * 125.20523 * 89.72139 * 19 18 2 21 21 C 1.38427 * 114.92613 * 179.85751 * 20 19 18 22 22 C 1.33391 * 114.91582 * 0.42866 * 21 20 19 23 23 S 1.75881 * 109.59502 * 359.77249 * 22 21 20 24 24 H 1.08998 * 109.47147 * 300.00387 * 1 2 3 25 25 H 1.09000 * 109.46849 * 59.99752 * 1 2 3 26 26 H 1.08993 * 109.47263 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47330 * 305.00067 * 4 2 1 28 28 H 1.09005 * 109.47124 * 185.00271 * 4 2 1 29 29 H 0.96999 * 119.99984 * 359.97438 * 5 4 2 30 30 H 1.09005 * 109.47403 * 300.00056 * 8 6 5 31 31 H 1.09002 * 109.47422 * 60.00295 * 8 6 5 32 32 H 1.08997 * 109.47244 * 300.00535 * 9 8 6 33 33 H 1.09002 * 109.46787 * 59.99910 * 9 8 6 34 34 H 0.97000 * 120.00459 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.47303 * 55.00177 * 18 2 1 36 36 H 1.08998 * 109.46940 * 175.00246 * 18 2 1 37 37 H 1.08002 * 122.53758 * 0.02562 * 20 19 18 38 38 H 1.08000 * 122.54337 * 180.20015 * 21 20 19 39 39 H 1.08002 * 125.20308 * 179.78666 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.6525 0.0353 -2.4423 6 6 1.9957 -0.4137 -3.6659 7 8 2.6295 -1.4414 -3.7789 8 6 1.5966 0.3643 -4.8933 9 6 2.1067 -0.3569 -6.1425 10 6 1.7081 0.4214 -7.3699 11 1 1.1467 1.3385 -7.2691 12 6 2.0593 -0.0379 -8.6216 13 7 1.7119 0.6416 -9.6926 14 14 3.0285 -1.6252 -8.7961 15 1 2.0884 -2.7689 -8.9128 16 1 3.8771 -1.5558 -10.0128 17 1 3.8903 -1.8129 -7.6014 18 6 2.0400 -0.7212 1.2493 19 6 1.6413 0.0571 2.4766 20 6 0.5042 -0.1056 3.1546 21 6 0.3568 0.7227 4.2539 22 6 1.3703 1.5642 4.4634 23 16 2.6008 1.3243 3.2297 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6054 -1.7198 -1.2951 28 1 3.1264 -0.7995 -1.2055 29 1 1.1483 0.8590 -2.3518 30 1 0.5102 0.4425 -4.9366 31 1 2.0312 1.3629 -4.8478 32 1 3.1930 -0.4348 -6.0990 33 1 1.6724 -1.3556 -6.1882 34 1 1.9586 0.3183 -10.5733 35 1 1.6054 -1.7198 1.2952 36 1 3.1263 -0.7994 1.2056 37 1 -0.2437 -0.8306 2.8691 38 1 -0.5144 0.6925 4.8914 39 1 1.4269 2.2828 5.2676 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292095162.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:23 Heat of formation + Delta-G solvation = -31.374673 kcal Electronic energy + Delta-G solvation = -18735.936492 eV Core-core repulsion = 15769.254462 eV Total energy + Delta-G solvation = -2966.682030 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.45817 -38.51963 -36.56248 -33.50485 -33.44068 -31.29759 -30.16292 -27.42707 -26.78362 -25.15661 -23.33221 -21.22022 -20.70879 -19.60118 -19.50795 -17.41686 -17.19449 -16.13949 -15.94382 -15.49301 -15.43818 -14.71667 -14.37742 -14.02001 -13.53595 -13.41983 -13.05254 -12.96327 -12.81346 -12.65621 -12.52871 -12.33643 -11.92938 -11.49034 -11.39378 -11.16398 -11.12955 -10.94712 -10.91781 -10.14052 -10.02632 -9.76867 -9.24535 -9.15568 -8.93282 -8.84122 -8.79440 -8.49197 -6.01565 -4.00181 0.66837 1.30909 1.68634 2.41491 3.15980 3.39170 3.45435 3.49326 3.56940 4.29917 4.52416 4.53319 4.71402 4.73303 4.80493 5.11693 5.20034 5.25229 5.31843 5.33961 5.40770 5.46888 5.61824 5.69634 5.73981 5.80893 5.96281 5.98715 6.03857 6.11083 6.12605 6.17387 6.65154 6.72428 7.38631 7.45796 7.78073 7.82848 8.51920 8.68902 9.01653 9.61590 11.11274 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.046875 B = 0.002507 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.191984 B =11166.908331 C =11270.662269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 H 0.079 0.921 4 C 0.124 3.876 5 N -0.741 5.741 6 C 0.509 3.491 7 O -0.542 6.542 8 C -0.123 4.123 9 C 0.001 3.999 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.261 1.261 18 C -0.045 4.045 19 C -0.163 4.163 20 C -0.142 4.142 21 C -0.133 4.133 22 C -0.219 4.219 23 S 0.095 5.905 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.398 0.602 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 1.169 30.517 30.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 H 0.097 0.903 4 C 0.000 4.000 5 N -0.395 5.395 6 C 0.298 3.702 7 O -0.418 6.418 8 C -0.162 4.162 9 C -0.036 4.036 10 C -0.562 4.562 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.084 4.084 19 C -0.281 4.281 20 C -0.172 4.172 21 C -0.164 4.164 22 C -0.355 4.355 23 S 0.358 5.642 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.232 0.768 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.477 1.080 29.945 29.969 hybrid contribution -1.211 -0.917 0.291 1.547 sum -1.687 0.163 30.236 30.284 Atomic orbital electron populations 1.21920 0.94285 1.02377 1.02219 1.21366 0.97011 1.00235 0.93058 0.90282 1.21280 0.99857 0.95430 0.83467 1.46164 1.59465 1.28080 1.05810 1.21525 0.78245 0.85754 0.84700 1.90648 1.39374 1.24983 1.86787 1.21665 1.02410 0.99865 0.92303 1.19365 0.96983 0.95848 0.91446 1.21121 1.36019 1.09761 0.89336 0.90947 1.24977 0.95444 0.97076 0.95804 1.69910 1.47014 1.39332 0.98038 0.86791 0.80854 0.84055 0.77825 1.20255 1.21460 1.18518 1.20163 1.01597 0.97910 0.88765 1.24477 0.98721 1.02559 1.02293 1.20147 0.98082 1.02503 0.96464 1.20187 0.99998 0.97121 0.99050 1.25607 0.98799 1.06476 1.04607 1.84415 1.22682 1.34443 1.22629 0.92028 0.92246 0.92351 0.91643 0.91781 0.76758 0.89679 0.89631 0.95843 0.96305 0.92736 0.89453 0.90288 0.84297 0.84436 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.75 37.16 0.33 -0.85 16 2 C -0.10 -0.80 2.41 -90.62 -0.22 -1.02 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.12 1.40 5.06 -4.05 -0.02 1.37 16 5 N -0.74 -9.72 5.28 -60.30 -0.32 -10.04 16 6 C 0.51 9.29 7.83 -10.98 -0.09 9.21 16 7 O -0.54 -12.11 15.98 5.56 0.09 -12.02 16 8 C -0.12 -2.39 5.64 -27.88 -0.16 -2.54 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 10 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 14 Si 0.88 22.77 27.47 -169.99 -4.67 18.10 16 15 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 18 C -0.04 -0.33 5.19 -27.88 -0.14 -0.48 16 19 C -0.16 -1.28 5.27 -36.00 -0.19 -1.47 16 20 C -0.14 -1.05 8.58 -41.21 -0.35 -1.41 16 21 C -0.13 -0.93 10.18 -41.21 -0.42 -1.35 16 22 C -0.22 -1.54 11.23 29.04 0.33 -1.21 16 23 S 0.10 0.74 23.33 -107.50 -2.51 -1.77 16 24 H 0.06 0.46 6.38 -51.93 -0.33 0.13 16 25 H 0.06 0.48 7.18 -51.93 -0.37 0.10 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.40 4.15 7.65 -40.82 -0.31 3.84 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 33 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 34 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -34.16 336.89 -9.03 -43.19 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.02 Total: -1.79 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.46 Total: -13.33 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.45 Total: -37.46 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.67 Total: 18.10 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.51 Total: -1.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.16 -9.03 -43.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292095162.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.819 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds