Wall clock time and date at job start Tue Mar 31 2020 06:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47033 * 2 1 4 4 C 1.50700 * 109.46965 * 240.00317 * 2 1 3 5 5 H 1.07999 * 119.99922 * 239.99727 * 4 2 1 6 6 C 1.37877 * 119.99989 * 60.00230 * 4 2 1 7 7 N 1.31505 * 120.00119 * 359.97438 * 6 4 2 8 8 Si 1.86810 * 119.99804 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46889 * 89.99813 * 8 6 4 10 10 H 1.48496 * 109.46980 * 209.99913 * 8 6 4 11 11 H 1.48505 * 109.47138 * 329.99875 * 8 6 4 12 12 N 1.46496 * 109.47196 * 120.00202 * 2 1 3 13 13 C 1.34776 * 120.00293 * 275.00463 * 12 2 1 14 14 O 1.21288 * 119.99802 * 359.97438 * 13 12 2 15 15 C 1.50695 * 120.00284 * 179.97438 * 13 12 2 16 16 H 1.08991 * 109.47481 * 305.00218 * 15 13 12 17 17 C 1.53001 * 109.46912 * 64.99976 * 15 13 12 18 18 O 1.42904 * 109.47145 * 184.99511 * 15 13 12 19 19 C 1.35945 * 116.99895 * 155.03683 * 18 15 13 20 20 C 1.38710 * 120.02750 * 5.43948 * 19 18 15 21 21 C 1.38157 * 119.96745 * 179.97438 * 20 19 18 22 22 C 1.38458 * 120.02774 * 359.97438 * 21 20 19 23 23 F 1.35095 * 119.96797 * 179.97438 * 22 21 20 24 24 C 1.38450 * 120.06328 * 0.25511 * 22 21 20 25 25 C 1.38160 * 120.02897 * 359.49144 * 24 22 21 26 26 H 1.08991 * 109.47310 * 299.99890 * 1 2 3 27 27 H 1.09004 * 109.47080 * 59.99895 * 1 2 3 28 28 H 1.09004 * 109.46945 * 179.97438 * 1 2 3 29 29 H 0.97004 * 120.00056 * 180.02562 * 7 6 4 30 30 H 0.96997 * 119.99761 * 94.99583 * 12 2 1 31 31 H 1.08996 * 109.47508 * 300.00144 * 17 15 13 32 32 H 1.09008 * 109.46966 * 59.99799 * 17 15 13 33 33 H 1.08995 * 109.47327 * 179.97438 * 17 15 13 34 34 H 1.07991 * 120.01708 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.98315 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.98812 * 179.71858 * 24 22 21 37 37 H 1.07993 * 120.01394 * 180.22811 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 0.9429 0.8298 -2.6033 8 14 2.3225 -1.1194 -4.0081 9 1 1.3448 -2.1614 -4.4125 10 1 2.4873 -0.1400 -5.1121 11 1 3.6309 -1.7564 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4116 15 6 2.6488 -0.7290 3.5877 16 1 2.0275 -1.6033 3.7812 17 6 4.0967 -1.1712 3.3664 18 8 2.5871 0.1566 4.7076 19 6 2.4904 -0.4114 5.9389 20 6 2.5691 -1.7895 6.0758 21 6 2.4711 -2.3653 7.3278 22 6 2.2950 -1.5674 8.4455 23 9 2.1988 -2.1318 9.6692 24 6 2.2115 -0.1921 8.3098 25 6 2.3144 0.3868 7.0595 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7082 1.1610 -3.4844 30 1 2.2490 -1.6318 1.1525 31 1 4.1439 -1.8466 2.5122 32 1 4.7182 -0.2967 3.1729 33 1 4.4599 -1.6847 4.2566 34 1 2.7068 -2.4119 5.2041 35 1 2.5319 -3.4383 7.4346 36 1 2.0696 0.4287 9.1820 37 1 2.2530 1.4598 6.9544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299570609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:54 Heat of formation + Delta-G solvation = -97.929292 kcal Electronic energy + Delta-G solvation = -21346.068462 eV Core-core repulsion = 17810.287231 eV Total energy + Delta-G solvation = -3535.781231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.98702 -40.56313 -38.88588 -37.16834 -34.83469 -32.84929 -31.94782 -31.15069 -29.40961 -28.67405 -25.33505 -24.67670 -23.44306 -22.44971 -20.95512 -19.52865 -18.54822 -17.76649 -17.43735 -16.43893 -15.84326 -15.65232 -15.51569 -15.36425 -14.82955 -14.59288 -14.05139 -13.83506 -13.68620 -13.30489 -13.19483 -12.81717 -12.52240 -12.30806 -12.30055 -11.84235 -11.64754 -11.18306 -11.06932 -11.00578 -10.87364 -10.78442 -10.37615 -10.28973 -9.41925 -9.12288 -9.09100 -8.61809 -8.24069 -8.03200 -6.17682 -4.27713 0.92845 1.02466 2.81500 3.16899 3.20894 3.28088 3.29857 3.37759 4.01912 4.12443 4.31187 4.47408 4.53188 4.70219 4.91763 4.95342 5.08752 5.14377 5.17221 5.32453 5.54162 5.59457 5.67939 5.87998 5.94154 6.01807 6.06816 6.49129 6.75848 6.89524 7.07612 7.20560 7.34670 7.48714 7.62298 7.84088 8.08228 8.52574 8.70021 8.97694 9.39771 10.88285 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.041702 B = 0.003121 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.263861 B = 8970.717339 C = 9230.205994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.702 5.702 13 C 0.506 3.494 14 O -0.531 6.531 15 C 0.062 3.938 16 H 0.094 0.906 17 C -0.175 4.175 18 O -0.279 6.279 19 C 0.130 3.870 20 C -0.187 4.187 21 C -0.111 4.111 22 C 0.050 3.950 23 F -0.144 7.144 24 C -0.112 4.112 25 C -0.124 4.124 26 H 0.015 0.985 27 H 0.092 0.908 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.919 -7.031 17.334 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.352 5.352 13 C 0.288 3.712 14 O -0.407 6.407 15 C 0.002 3.998 16 H 0.111 0.889 17 C -0.232 4.232 18 O -0.190 6.190 19 C 0.084 3.916 20 C -0.206 4.206 21 C -0.130 4.130 22 C 0.031 3.969 23 F -0.123 7.123 24 C -0.131 4.131 25 C -0.142 4.142 26 H 0.034 0.966 27 H 0.110 0.890 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.620 -5.843 17.171 18.496 hybrid contribution 0.364 -1.304 -0.700 1.524 sum 3.984 -7.147 16.472 18.392 Atomic orbital electron populations 1.22099 0.98332 0.99226 1.01070 1.18799 0.91095 0.94058 0.79555 0.93189 1.21187 1.32696 1.13320 0.90205 0.91988 1.24890 0.94775 0.94919 0.99091 1.69897 1.35697 1.22347 1.24005 0.86432 0.79159 0.79266 0.82143 1.20518 1.21029 1.19825 1.46454 1.65203 1.13563 1.09985 1.19844 0.79463 0.87716 0.84134 1.90707 1.49870 1.15597 1.84567 1.22430 0.98747 0.92948 0.85635 0.88854 1.22321 0.94499 1.03135 1.03259 1.86280 1.87036 1.34465 1.11262 1.19169 0.95133 0.91485 0.85852 1.21229 1.07043 0.93962 0.98348 1.20920 1.00533 1.00440 0.91062 1.17563 1.07518 0.91582 0.80252 1.91477 1.94162 1.85467 1.41215 1.20948 1.00936 0.93020 0.98154 1.20340 1.03764 1.00861 0.89274 0.96583 0.88983 0.95369 0.92475 0.77843 0.89857 0.90537 0.91193 0.84118 0.84526 0.84130 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16 2 C 0.27 6.59 2.56 -69.08 -0.18 6.42 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.54 -13.75 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.43 11.32 55.43 0.63 -23.80 16 8 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.70 -13.89 5.03 -54.93 -0.28 -14.17 16 13 C 0.51 9.89 7.14 -10.99 -0.08 9.81 16 14 O -0.53 -12.93 16.17 -14.31 -0.23 -13.16 16 15 C 0.06 0.89 2.64 -27.88 -0.07 0.81 16 16 H 0.09 1.08 6.31 -51.93 -0.33 0.75 16 17 C -0.17 -2.00 9.12 37.16 0.34 -1.66 16 18 O -0.28 -4.32 9.34 -39.43 -0.37 -4.69 16 19 C 0.13 1.65 6.60 -39.24 -0.26 1.39 16 20 C -0.19 -1.96 8.24 -39.44 -0.33 -2.29 16 21 C -0.11 -1.08 10.02 -39.53 -0.40 -1.48 16 22 C 0.05 0.53 7.30 -39.42 -0.29 0.24 16 23 F -0.14 -1.59 17.27 2.25 0.04 -1.56 16 24 C -0.11 -1.11 10.02 -39.53 -0.40 -1.51 16 25 C -0.12 -1.40 9.99 -39.44 -0.39 -1.79 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.39 6.38 8.32 -40.82 -0.34 6.04 16 31 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 32 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 33 H 0.07 0.65 6.91 -51.93 -0.36 0.29 16 34 H 0.14 1.22 5.43 -52.49 -0.28 0.94 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -31.08 320.09 -7.01 -38.10 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.51 Total: 5.06 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.10 Total: -5.73 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.35 Total: -37.97 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.60 Total: -17.84 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.08 -7.01 -38.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299570609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.833 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds