Wall clock time and date at job start Tue Mar 31 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47391 * 2 1 4 4 C 1.50709 * 109.46934 * 119.99998 * 2 1 3 5 5 H 1.07994 * 119.99903 * 119.99519 * 4 2 1 6 6 C 1.37875 * 119.99872 * 299.99833 * 4 2 1 7 7 N 1.31518 * 119.99843 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00026 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47096 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47109 * 119.99916 * 8 6 4 11 11 H 1.48495 * 109.47269 * 239.99985 * 8 6 4 12 12 N 1.46500 * 109.47382 * 239.99631 * 2 1 3 13 13 C 1.34771 * 119.99946 * 84.99967 * 12 2 1 14 14 O 1.21287 * 120.00225 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00307 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.47047 * 60.00393 * 15 13 12 17 17 C 1.53003 * 109.47013 * 300.00332 * 15 13 12 18 18 O 1.42897 * 109.47153 * 180.02562 * 15 13 12 19 19 C 1.35948 * 116.99773 * 204.66206 * 18 15 13 20 20 C 1.38708 * 120.03181 * 354.91884 * 19 18 15 21 21 C 1.38147 * 119.96797 * 180.24501 * 20 19 18 22 22 C 1.38454 * 120.03169 * 359.48052 * 21 20 19 23 23 F 1.35101 * 119.96895 * 180.29199 * 22 21 20 24 24 C 1.38451 * 120.05978 * 0.27222 * 22 21 20 25 25 C 1.38155 * 120.03303 * 359.97438 * 24 22 21 26 26 H 1.09000 * 109.47391 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46948 * 300.00651 * 1 2 3 28 28 H 1.08999 * 109.46709 * 59.99696 * 1 2 3 29 29 H 0.97001 * 119.99801 * 180.02562 * 7 6 4 30 30 H 0.97006 * 120.00401 * 265.00993 * 12 2 1 31 31 H 1.08998 * 109.47264 * 299.99928 * 17 15 13 32 32 H 1.08998 * 109.47166 * 60.00067 * 17 15 13 33 33 H 1.08997 * 109.47134 * 179.97438 * 17 15 13 34 34 H 1.07993 * 120.01515 * 0.02756 * 20 19 18 35 35 H 1.08000 * 119.98793 * 179.74662 * 21 20 19 36 36 H 1.08008 * 119.98631 * 180.02562 * 24 22 21 37 37 H 1.07997 * 120.01440 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2306 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.1463 -2.2870 3.6039 10 1 3.1465 -0.1873 4.8166 11 1 1.1659 -1.5866 4.8161 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6490 -0.7290 -3.5877 16 1 1.9761 -1.5507 -3.8325 17 6 4.0514 -1.2800 -3.3221 18 8 2.6977 0.1894 -4.6814 19 6 2.6195 -0.3363 -5.9326 20 6 2.6047 -1.7122 -6.1078 21 6 2.5303 -2.2451 -7.3802 22 6 2.4597 -1.4065 -8.4796 23 9 2.3810 -1.9289 -9.7230 24 6 2.4692 -0.0329 -8.3059 25 6 2.5487 0.5027 -7.0349 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7087 1.1613 3.4844 30 1 2.2490 -1.6319 -1.1526 31 1 4.7243 -0.4582 -3.0772 32 1 4.0146 -1.9804 -2.4878 33 1 4.4142 -1.7943 -4.2120 34 1 2.6548 -2.3666 -5.2502 35 1 2.5228 -3.3163 -7.5173 36 1 2.4137 0.6202 -9.1643 37 1 2.5557 1.5742 -6.8997 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299570612.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:00 Heat of formation + Delta-G solvation = -97.819160 kcal Electronic energy + Delta-G solvation = -21346.054329 eV Core-core repulsion = 17810.277874 eV Total energy + Delta-G solvation = -3535.776455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.98527 -40.56440 -38.88783 -37.16788 -34.83634 -32.87400 -31.93612 -31.14985 -29.41123 -28.65108 -25.33717 -24.68170 -23.44226 -22.44900 -20.96627 -19.51546 -18.55312 -17.77045 -17.43696 -16.44046 -15.85057 -15.64929 -15.52623 -15.36283 -14.81675 -14.58796 -14.06594 -13.83645 -13.66972 -13.30093 -13.19717 -12.81745 -12.52820 -12.32438 -12.29155 -11.85330 -11.64302 -11.16532 -11.07544 -11.01929 -10.87471 -10.78351 -10.35397 -10.29703 -9.41893 -9.12247 -9.08809 -8.61794 -8.24004 -8.03222 -6.17910 -4.27792 0.92934 1.02552 2.81153 3.17725 3.20348 3.28256 3.30428 3.37931 4.01709 4.12434 4.31129 4.47427 4.53151 4.70282 4.91255 4.94855 5.08935 5.14226 5.17186 5.31969 5.53794 5.59864 5.67951 5.88033 5.94233 6.01910 6.06754 6.49207 6.75620 6.89335 7.07549 7.20711 7.34614 7.48706 7.62338 7.83998 8.08122 8.52558 8.70153 8.97705 9.39732 10.88118 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.042784 B = 0.003110 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.297577 B = 9000.303504 C = 9261.769043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.702 5.702 13 C 0.506 3.494 14 O -0.531 6.531 15 C 0.062 3.938 16 H 0.095 0.905 17 C -0.175 4.175 18 O -0.278 6.278 19 C 0.130 3.870 20 C -0.187 4.187 21 C -0.111 4.111 22 C 0.050 3.950 23 F -0.144 7.144 24 C -0.112 4.112 25 C -0.124 4.124 26 H 0.027 0.973 27 H 0.092 0.908 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.389 0.611 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -6.940 -17.363 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.164 3.836 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.352 5.352 13 C 0.288 3.712 14 O -0.408 6.408 15 C 0.002 3.998 16 H 0.112 0.888 17 C -0.233 4.233 18 O -0.190 6.190 19 C 0.084 3.916 20 C -0.206 4.206 21 C -0.130 4.130 22 C 0.031 3.969 23 F -0.123 7.123 24 C -0.131 4.131 25 C -0.142 4.142 26 H 0.046 0.954 27 H 0.110 0.890 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.222 0.778 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.750 -5.761 -17.197 18.520 hybrid contribution 0.349 -1.282 0.691 1.498 sum 4.099 -7.043 -16.506 18.408 Atomic orbital electron populations 1.22098 0.98331 0.99221 1.01072 1.18808 0.91104 0.94068 0.79576 0.93184 1.21224 1.32599 1.13301 0.90187 0.91934 1.24895 0.94767 0.94949 0.99109 1.69913 1.35733 1.22408 1.23894 0.86376 0.78610 0.79503 0.82496 1.19717 1.20841 1.20845 1.46459 1.65219 1.13570 1.09946 1.19843 0.79477 0.87704 0.84132 1.90707 1.49915 1.15588 1.84551 1.22433 0.98985 0.92106 0.86250 0.88775 1.22335 0.95300 1.02487 1.03162 1.86277 1.86898 1.34874 1.10983 1.19168 0.95189 0.91761 0.85496 1.21224 1.07127 0.94199 0.98039 1.20915 1.00634 1.00301 0.91104 1.17563 1.07724 0.91956 0.79679 1.91478 1.94241 1.87190 1.39415 1.20948 1.00942 0.93303 0.97865 1.20341 1.03984 1.00662 0.89247 0.95365 0.88975 0.96595 0.92537 0.77828 0.90516 0.89876 0.91201 0.84123 0.84531 0.84130 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 2 C 0.27 6.58 2.56 -69.08 -0.18 6.40 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.42 11.32 55.43 0.63 -23.79 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.70 -13.88 4.96 -54.93 -0.27 -14.15 16 13 C 0.51 9.89 7.20 -10.99 -0.08 9.81 16 14 O -0.53 -12.93 16.16 -14.36 -0.23 -13.16 16 15 C 0.06 0.88 2.65 -27.88 -0.07 0.81 16 16 H 0.09 1.09 6.31 -51.93 -0.33 0.76 16 17 C -0.18 -1.99 9.06 37.16 0.34 -1.66 16 18 O -0.28 -4.32 9.33 -39.49 -0.37 -4.69 16 19 C 0.13 1.65 6.60 -39.23 -0.26 1.39 16 20 C -0.19 -1.96 8.23 -39.44 -0.32 -2.29 16 21 C -0.11 -1.08 10.02 -39.54 -0.40 -1.48 16 22 C 0.05 0.53 7.30 -39.42 -0.29 0.24 16 23 F -0.14 -1.59 17.27 2.25 0.04 -1.56 16 24 C -0.11 -1.11 10.02 -39.53 -0.40 -1.51 16 25 C -0.12 -1.40 9.99 -39.44 -0.39 -1.79 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 6.38 7.96 -40.82 -0.32 6.06 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.83 7.56 -51.93 -0.39 0.44 16 33 H 0.07 0.64 6.90 -51.93 -0.36 0.29 16 34 H 0.14 1.22 5.43 -52.49 -0.28 0.94 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 37 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 319.27 15.07 4.81 4.81 Total: -1.00 -31.09 319.27 -6.99 -38.08 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.47 Total: 5.06 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.10 Total: -5.72 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.35 Total: -37.94 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.60 Total: -17.85 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.09 -6.99 -38.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299570612.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.736 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds