Wall clock time and date at job start Tue Mar 31 2020 06:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47153 * 2 1 4 4 O 1.42905 * 109.46673 * 119.99576 * 2 1 3 5 5 C 1.35939 * 116.99929 * 275.17117 * 4 2 1 6 6 C 1.38702 * 120.03375 * 5.19969 * 5 4 2 7 7 C 1.38148 * 119.97326 * 180.25053 * 6 5 4 8 8 C 1.38461 * 120.02930 * 0.02562 * 7 6 5 9 9 F 1.35105 * 119.96745 * 179.97438 * 8 7 6 10 10 C 1.38451 * 120.05609 * 359.97438 * 8 7 6 11 11 C 1.38143 * 120.03576 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.47394 * 239.99474 * 2 1 3 13 13 O 1.21275 * 120.00319 * 245.00550 * 12 2 1 14 14 N 1.34780 * 119.99725 * 65.00215 * 12 2 1 15 15 C 1.46498 * 120.00066 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.47039 * 325.00111 * 15 14 12 17 17 C 1.53005 * 109.47161 * 84.99805 * 15 14 12 18 18 C 1.50701 * 109.47402 * 204.99892 * 15 14 12 19 19 H 1.08000 * 119.99662 * 0.02562 * 18 15 14 20 20 C 1.37874 * 120.00164 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00071 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99977 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47151 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47639 * 119.99911 * 22 20 18 25 25 H 1.48502 * 109.47110 * 240.00159 * 22 20 18 26 26 H 1.09005 * 109.47153 * 59.99996 * 1 2 3 27 27 H 1.08997 * 109.47335 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47478 * 300.00821 * 1 2 3 29 29 H 1.08001 * 120.01624 * 0.24429 * 6 5 4 30 30 H 1.08004 * 119.99115 * 179.97438 * 7 6 5 31 31 H 1.08010 * 119.98109 * 180.02562 * 10 8 7 32 32 H 1.07996 * 120.01912 * 179.97438 * 11 10 8 33 33 H 0.97003 * 119.99666 * 0.02562 * 14 12 2 34 34 H 1.08998 * 109.47096 * 299.99946 * 17 15 14 35 35 H 1.09001 * 109.46894 * 60.00218 * 17 15 14 36 36 H 1.08995 * 109.46854 * 179.97438 * 17 15 14 37 37 H 0.97001 * 120.00001 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.1089 0.0621 2.3054 6 6 1.6580 1.3735 2.3276 7 6 1.7677 2.1217 3.4838 8 6 2.3281 1.5630 4.6200 9 9 2.4353 2.2960 5.7499 10 6 2.7786 0.2540 4.5992 11 6 2.6691 -0.4967 3.4447 12 6 2.0324 -0.7105 -1.2304 13 8 2.6529 -1.7467 -1.1214 14 7 1.7920 -0.1943 -2.4520 15 6 2.2798 -0.8852 -3.6481 16 1 3.2399 -1.3535 -3.4310 17 6 1.2715 -1.9582 -4.0643 18 6 2.4475 0.1082 -4.7689 19 1 2.2144 1.1501 -4.6062 20 6 2.8995 -0.3129 -6.0015 21 7 3.1848 -1.5814 -6.1990 22 14 3.1080 0.9186 -7.3904 23 1 2.7229 2.2715 -6.9144 24 1 4.5262 0.9333 -7.8303 25 1 2.2400 0.5301 -8.5309 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.2213 1.8098 1.4413 30 1 1.4171 3.1430 3.5012 31 1 3.2152 -0.1807 5.4864 32 1 3.0210 -1.5176 3.4287 33 1 1.2959 0.6347 -2.5391 34 1 1.1503 -2.6767 -3.2537 35 1 0.3115 -1.4899 -4.2814 36 1 1.6343 -2.4719 -4.9545 37 1 3.5032 -1.8776 -7.0661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299570613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:07 Heat of formation + Delta-G solvation = -97.950388 kcal Electronic energy + Delta-G solvation = -21347.341832 eV Core-core repulsion = 17811.559687 eV Total energy + Delta-G solvation = -3535.782146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.97953 -40.56239 -38.88693 -37.16667 -34.83569 -32.85160 -31.94548 -31.14623 -29.40402 -28.69817 -25.32073 -24.67938 -23.43988 -22.44149 -20.98591 -19.50288 -18.55697 -17.76045 -17.43312 -16.43038 -15.83320 -15.69653 -15.49824 -15.33126 -14.85587 -14.58322 -14.05116 -13.92120 -13.65882 -13.30839 -13.06161 -12.84163 -12.48476 -12.43494 -12.31419 -11.77951 -11.70024 -11.15155 -11.09071 -10.98552 -10.94139 -10.74099 -10.35671 -10.29547 -9.41488 -9.12170 -9.08816 -8.61930 -8.23355 -8.03437 -6.17938 -4.27843 0.93441 1.02906 2.81534 3.17028 3.20368 3.28368 3.30576 3.38335 4.01808 4.12768 4.31392 4.47870 4.53558 4.70419 4.91604 4.94810 5.08975 5.14324 5.17045 5.32101 5.52736 5.58113 5.67889 5.88311 5.94603 5.99846 6.06264 6.49526 6.75861 6.89592 7.07569 7.20790 7.34734 7.48751 7.62416 7.84178 8.08198 8.52603 8.70138 8.97746 9.39733 10.88089 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032982 B = 0.003209 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.754759 B = 8722.788543 C = 9057.940214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 H 0.095 0.905 4 O -0.279 6.279 5 C 0.130 3.870 6 C -0.187 4.187 7 C -0.111 4.111 8 C 0.050 3.950 9 F -0.144 7.144 10 C -0.112 4.112 11 C -0.124 4.124 12 C 0.506 3.494 13 O -0.531 6.531 14 N -0.703 5.703 15 C 0.266 3.734 16 H 0.050 0.950 17 C -0.148 4.148 18 C -0.535 4.535 19 H 0.062 0.938 20 C 0.066 3.934 21 N -0.882 5.882 22 Si 0.903 3.097 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.141 0.859 30 H 0.137 0.863 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.389 0.611 34 H 0.015 0.985 35 H 0.027 0.973 36 H 0.091 0.909 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.315 6.778 16.940 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.002 3.998 3 H 0.112 0.888 4 O -0.190 6.190 5 C 0.084 3.916 6 C -0.206 4.206 7 C -0.129 4.129 8 C 0.031 3.969 9 F -0.123 7.123 10 C -0.131 4.131 11 C -0.142 4.142 12 C 0.289 3.711 13 O -0.407 6.407 14 N -0.352 5.352 15 C 0.164 3.836 16 H 0.068 0.932 17 C -0.207 4.207 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.137 4.137 21 N -0.519 5.519 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.222 0.778 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.110 0.890 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.735 5.697 16.835 18.393 hybrid contribution -0.209 1.404 -0.706 1.585 sum -4.944 7.100 16.129 18.303 Atomic orbital electron populations 1.22317 0.92853 1.04489 1.03520 1.22432 0.95666 0.97150 0.84555 0.88783 1.86276 1.80457 1.36793 1.15519 1.19166 0.94813 0.90308 0.87357 1.21226 1.05758 0.94016 0.99571 1.20920 0.99719 1.00776 0.91535 1.17566 1.05262 0.90722 0.83360 1.91480 1.94574 1.76991 1.49277 1.20944 1.00591 0.92496 0.99028 1.20337 1.02097 1.01574 0.90223 1.19838 0.81137 0.85983 0.84182 1.90703 1.40335 1.23357 1.86335 1.46457 1.55928 1.26882 1.05947 1.18805 0.94061 0.91016 0.79672 0.93220 1.22089 0.98398 0.98661 1.01504 1.21229 1.46244 0.94286 0.95620 0.91941 1.24892 0.94778 0.95465 0.98567 1.69911 1.43816 1.14307 1.23906 0.86375 0.77909 0.81025 0.81676 1.19718 1.20830 1.20841 0.89933 0.90601 0.91155 0.84115 0.84524 0.84130 0.83897 0.77839 0.96555 0.95354 0.89022 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.12 37.16 0.34 -1.61 16 2 C 0.06 0.88 2.64 -27.89 -0.07 0.81 16 3 H 0.09 1.10 6.31 -51.93 -0.33 0.78 16 4 O -0.28 -4.32 9.34 -39.41 -0.37 -4.69 16 5 C 0.13 1.65 6.60 -39.23 -0.26 1.39 16 6 C -0.19 -1.97 8.24 -39.44 -0.33 -2.30 16 7 C -0.11 -1.09 10.02 -39.53 -0.40 -1.49 16 8 C 0.05 0.53 7.30 -39.42 -0.29 0.25 16 9 F -0.14 -1.60 17.27 2.25 0.04 -1.57 16 10 C -0.11 -1.12 10.02 -39.54 -0.40 -1.51 16 11 C -0.12 -1.40 9.98 -39.44 -0.39 -1.80 16 12 C 0.51 9.89 7.14 -10.98 -0.08 9.81 16 13 O -0.53 -12.92 16.17 -14.30 -0.23 -13.15 16 14 N -0.70 -13.89 5.03 -54.93 -0.28 -14.17 16 15 C 0.27 6.58 2.56 -69.08 -0.18 6.40 16 16 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 17 C -0.15 -3.59 9.26 37.16 0.34 -3.25 16 18 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 21 N -0.88 -24.43 11.32 55.43 0.63 -23.81 16 22 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.64 6.91 -51.93 -0.36 0.28 16 29 H 0.14 1.23 5.42 -52.49 -0.28 0.95 16 30 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 31 H 0.14 1.08 8.06 -52.48 -0.42 0.65 16 32 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 33 H 0.39 6.39 8.32 -40.82 -0.34 6.05 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -31.14 320.09 -7.01 -38.15 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -4.51 Total: 4.97 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.10 Total: -5.71 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.35 Total: -37.98 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.60 Total: -17.84 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.14 -7.01 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299570613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.796 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds