Wall clock time and date at job start Tue Mar 31 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47153 * 2 1 4 4 O 1.42905 * 109.46673 * 119.99576 * 2 1 3 5 5 C 1.35939 * 116.99929 * 275.17117 * 4 2 1 6 6 C 1.38702 * 120.03375 * 5.19969 * 5 4 2 7 7 C 1.38148 * 119.97326 * 180.25053 * 6 5 4 8 8 C 1.38461 * 120.02930 * 0.02562 * 7 6 5 9 9 F 1.35105 * 119.96745 * 179.97438 * 8 7 6 10 10 C 1.38451 * 120.05609 * 359.97438 * 8 7 6 11 11 C 1.38143 * 120.03576 * 359.97438 * 10 8 7 12 12 C 1.50699 * 109.47394 * 239.99474 * 2 1 3 13 13 O 1.21275 * 120.00319 * 245.00550 * 12 2 1 14 14 N 1.34780 * 119.99725 * 65.00215 * 12 2 1 15 15 C 1.46498 * 120.00066 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.47039 * 325.00111 * 15 14 12 17 17 C 1.53005 * 109.47161 * 84.99805 * 15 14 12 18 18 C 1.50701 * 109.47402 * 204.99892 * 15 14 12 19 19 H 1.08000 * 119.99662 * 0.02562 * 18 15 14 20 20 C 1.37874 * 120.00164 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00071 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99977 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.47151 * 359.97438 * 22 20 18 24 24 H 1.48490 * 109.47639 * 119.99911 * 22 20 18 25 25 H 1.48502 * 109.47110 * 240.00159 * 22 20 18 26 26 H 1.09005 * 109.47153 * 59.99996 * 1 2 3 27 27 H 1.08997 * 109.47335 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47478 * 300.00821 * 1 2 3 29 29 H 1.08001 * 120.01624 * 0.24429 * 6 5 4 30 30 H 1.08004 * 119.99115 * 179.97438 * 7 6 5 31 31 H 1.08010 * 119.98109 * 180.02562 * 10 8 7 32 32 H 1.07996 * 120.01912 * 179.97438 * 11 10 8 33 33 H 0.97003 * 119.99666 * 0.02562 * 14 12 2 34 34 H 1.08998 * 109.47096 * 299.99946 * 17 15 14 35 35 H 1.09001 * 109.46894 * 60.00218 * 17 15 14 36 36 H 1.08995 * 109.46854 * 179.97438 * 17 15 14 37 37 H 0.97001 * 120.00001 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 1.1669 5 6 2.1089 0.0621 2.3054 6 6 1.6580 1.3735 2.3276 7 6 1.7677 2.1217 3.4838 8 6 2.3281 1.5630 4.6200 9 9 2.4353 2.2960 5.7499 10 6 2.7786 0.2540 4.5992 11 6 2.6691 -0.4967 3.4447 12 6 2.0324 -0.7105 -1.2304 13 8 2.6529 -1.7467 -1.1214 14 7 1.7920 -0.1943 -2.4520 15 6 2.2798 -0.8852 -3.6481 16 1 3.2399 -1.3535 -3.4310 17 6 1.2715 -1.9582 -4.0643 18 6 2.4475 0.1082 -4.7689 19 1 2.2144 1.1501 -4.6062 20 6 2.8995 -0.3129 -6.0015 21 7 3.1848 -1.5814 -6.1990 22 14 3.1080 0.9186 -7.3904 23 1 2.7229 2.2715 -6.9144 24 1 4.5262 0.9333 -7.8303 25 1 2.2400 0.5301 -8.5309 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.2213 1.8098 1.4413 30 1 1.4171 3.1430 3.5012 31 1 3.2152 -0.1807 5.4864 32 1 3.0210 -1.5176 3.4287 33 1 1.2959 0.6347 -2.5391 34 1 1.1503 -2.6767 -3.2537 35 1 0.3115 -1.4899 -4.2814 36 1 1.6343 -2.4719 -4.9545 37 1 3.5032 -1.8776 -7.0661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299570613.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:06 Heat of formation + Delta-G solvation = -117.069923 kcal Electronic energy + Delta-G solvation = -21348.170918 eV Core-core repulsion = 17811.559687 eV Total energy + Delta-G solvation = -3536.611231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.81097 -41.64840 -40.29424 -38.21577 -36.69673 -34.53363 -33.22373 -32.06191 -30.60144 -30.12983 -27.34631 -25.80654 -24.35689 -23.52756 -22.51113 -21.15440 -19.49242 -19.22479 -18.35592 -17.83782 -17.16097 -17.02367 -16.79517 -16.46398 -16.15931 -15.71313 -15.54155 -15.05972 -14.72504 -14.47076 -14.28425 -14.14655 -13.88534 -13.63956 -13.34234 -13.16965 -12.99865 -12.87041 -12.78030 -12.69281 -12.28328 -12.11026 -11.96906 -11.77426 -11.10325 -10.73504 -10.58551 -10.18727 -9.83106 -9.13570 -8.17830 -6.35659 0.14895 0.18260 1.45760 1.46675 1.58340 1.65267 1.69302 2.40169 2.55717 2.75103 3.13258 3.31948 3.57743 3.73168 3.80154 3.85356 3.93541 4.14857 4.31061 4.48749 4.66678 4.72374 4.75672 4.90561 4.91515 5.08039 5.08537 5.13273 5.14943 5.23361 5.40958 5.57411 5.64896 5.69974 5.87693 6.08230 6.30270 6.71804 6.87736 7.30562 7.47348 8.88837 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.032982 B = 0.003209 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.754759 B = 8722.788543 C = 9057.940214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 H 0.126 0.874 4 O -0.310 6.310 5 C 0.106 3.894 6 C -0.183 4.183 7 C -0.106 4.106 8 C 0.041 3.959 9 F -0.147 7.147 10 C -0.109 4.109 11 C -0.136 4.136 12 C 0.500 3.500 13 O -0.588 6.588 14 N -0.694 5.694 15 C 0.271 3.729 16 H -0.003 1.003 17 C -0.135 4.135 18 C -0.545 4.545 19 H 0.079 0.921 20 C 0.013 3.987 21 N -0.919 5.919 22 Si 0.974 3.026 23 H -0.256 1.256 24 H -0.286 1.286 25 H -0.280 1.280 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.142 0.858 33 H 0.409 0.591 34 H 0.010 0.990 35 H 0.045 0.955 36 H 0.066 0.934 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 9.716 17.614 21.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 H 0.143 0.857 4 O -0.223 6.223 5 C 0.060 3.940 6 C -0.201 4.201 7 C -0.125 4.125 8 C 0.022 3.978 9 F -0.126 7.126 10 C -0.127 4.127 11 C -0.155 4.155 12 C 0.285 3.715 13 O -0.469 6.469 14 N -0.344 5.344 15 C 0.168 3.832 16 H 0.015 0.985 17 C -0.194 4.194 18 C -0.583 4.583 19 H 0.097 0.903 20 C -0.187 4.187 21 N -0.557 5.557 22 Si 0.798 3.202 23 H -0.180 1.180 24 H -0.212 1.212 25 H -0.205 1.205 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.180 0.820 30 H 0.180 0.820 31 H 0.179 0.821 32 H 0.160 0.840 33 H 0.245 0.755 34 H 0.029 0.971 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.079 8.685 17.540 20.495 hybrid contribution 0.241 0.464 -0.806 0.960 sum -5.839 9.148 16.735 19.946 Atomic orbital electron populations 1.22338 0.90147 1.04176 1.05864 1.22356 0.97372 0.97106 0.81797 0.85658 1.86224 1.81381 1.38256 1.16478 1.19422 0.96468 0.91392 0.86707 1.21416 1.05120 0.92953 1.00599 1.21204 0.98728 1.01817 0.90749 1.17795 1.05451 0.90949 0.83623 1.91476 1.94615 1.77033 1.49503 1.21131 1.00014 0.92359 0.99212 1.20482 1.02439 1.01955 0.90582 1.20837 0.79714 0.85355 0.85551 1.90673 1.42782 1.26122 1.87287 1.46125 1.55908 1.27343 1.05054 1.18387 0.92019 0.91334 0.81481 0.98534 1.21910 0.98937 0.98411 1.00115 1.21575 1.45928 0.95040 0.95783 0.90327 1.25822 0.94407 0.97160 1.01302 1.70067 1.44709 1.16399 1.24525 0.85268 0.77407 0.79202 0.78277 1.18005 1.21227 1.20540 0.88033 0.92309 0.88271 0.81971 0.81959 0.82136 0.83970 0.75458 0.97069 0.93545 0.91519 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.30 9.12 71.98 0.66 -2.64 16 2 C 0.07 1.96 2.64 29.85 0.08 2.03 16 3 H 0.13 2.54 6.31 -2.38 -0.02 2.52 16 4 O -0.31 -9.48 9.34 -73.88 -0.69 -10.17 16 5 C 0.11 2.54 6.60 22.49 0.15 2.69 16 6 C -0.18 -3.30 8.24 22.36 0.18 -3.12 16 7 C -0.11 -1.75 10.02 22.30 0.22 -1.53 16 8 C 0.04 0.78 7.30 22.37 0.16 0.94 16 9 F -0.15 -2.94 17.27 44.97 0.78 -2.17 16 10 C -0.11 -2.00 10.02 22.30 0.22 -1.78 16 11 C -0.14 -2.99 9.98 22.36 0.22 -2.76 16 12 C 0.50 19.64 7.14 87.66 0.63 20.26 16 13 O -0.59 -29.93 16.17 15.98 0.26 -29.67 16 14 N -0.69 -27.13 5.03 -446.10 -2.24 -29.37 16 15 C 0.27 13.71 2.56 44.25 0.11 13.83 16 16 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 17 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 18 C -0.55 -27.84 8.73 25.60 0.22 -27.62 16 19 H 0.08 3.67 7.74 -2.91 -0.02 3.65 16 20 C 0.01 0.69 5.30 84.65 0.45 1.14 16 21 N -0.92 -52.06 11.32 21.45 0.24 -51.82 16 22 Si 0.97 40.85 29.54 68.60 2.03 42.88 16 23 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 24 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 26 H 0.10 1.60 7.93 -2.38 -0.02 1.58 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.10 1.41 6.91 -2.39 -0.02 1.39 16 29 H 0.16 2.13 5.42 -2.91 -0.02 2.11 16 30 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 33 H 0.41 12.56 8.32 -92.71 -0.77 11.79 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 37 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -70.37 320.09 4.68 -65.69 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.33 Total: 19.21 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 3.98 Total: -4.59 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.00 Total: -81.19 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.43 Total: -39.84 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -70.37 4.68 -65.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299570613.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.376 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds