Wall clock time and date at job start Tue Mar 31 2020 05:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21694 * 120.00256 * 359.97438 * 14 13 3 16 16 C 1.46583 * 119.99673 * 180.02562 * 14 13 3 17 17 C 1.36657 * 125.45392 * 179.71744 * 16 14 13 18 18 C 1.37470 * 113.29392 * 179.83454 * 17 16 14 19 19 C 1.33823 * 115.10540 * 0.45909 * 18 17 16 20 20 C 1.50700 * 124.52677 * 179.76665 * 19 18 17 21 21 C 1.52994 * 109.46802 * 119.99875 * 20 19 18 22 22 C 1.52993 * 109.46867 * 240.00076 * 20 19 18 23 23 S 1.70622 * 110.94912 * 359.74257 * 19 18 17 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 31 31 H 1.07998 * 123.35197 * 0.02562 * 17 16 14 32 32 H 1.08003 * 122.45252 * 180.22338 * 18 17 16 33 33 H 1.09002 * 109.46984 * 359.97438 * 20 19 18 34 34 H 1.09002 * 109.47273 * 60.00273 * 21 20 19 35 35 H 1.09002 * 109.46826 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47674 * 299.99551 * 21 20 19 37 37 H 1.08993 * 109.47577 * 60.00258 * 22 20 19 38 38 H 1.09002 * 109.46751 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.47233 * 299.99743 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3419 2.6326 0.4310 16 6 0.0477 3.3202 2.6193 17 6 -1.1508 3.9327 2.8555 18 6 -1.2502 4.4637 4.1196 19 6 -0.1682 4.3016 4.8902 20 6 -0.0451 4.8026 6.3062 21 6 0.2009 3.6205 7.2457 22 6 1.1267 5.7817 6.4006 23 16 1.0532 3.4513 4.0557 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 2.2720 2.1231 1.9978 31 1 -1.9424 3.9910 2.1231 32 1 -2.1353 4.9777 4.4644 33 1 -0.9661 5.3099 6.5934 34 1 1.1221 3.1135 6.9584 35 1 0.2895 3.9828 8.2700 36 1 -0.6340 2.9229 7.1785 37 1 0.9514 6.6238 5.7313 38 1 1.2154 6.1444 7.4247 39 1 2.0479 5.2747 6.1132 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330872833.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:11 Heat of formation + Delta-G solvation = -29.324548 kcal Electronic energy + Delta-G solvation = -19706.073439 eV Core-core repulsion = 16739.480309 eV Total energy + Delta-G solvation = -2966.593130 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.17171 -38.00821 -35.37401 -34.78599 -32.40443 -31.03971 -28.90542 -27.41420 -26.96786 -24.75721 -23.01276 -21.46627 -21.09648 -19.46017 -19.12309 -17.74532 -16.32785 -15.77111 -15.26262 -14.79652 -14.62616 -14.55027 -14.10413 -13.83936 -13.53969 -12.99735 -12.73241 -12.65488 -12.35049 -12.15707 -11.87164 -11.52967 -11.48861 -11.33072 -11.31080 -11.23711 -10.99030 -10.81995 -10.62704 -10.33345 -10.17806 -9.63274 -9.19994 -9.05329 -8.52476 -8.50187 -8.45705 -7.84246 -6.12237 -4.21901 0.72580 1.60536 2.05160 2.59605 3.26116 3.31346 3.32541 3.87390 4.06161 4.38115 4.42328 4.66746 4.88103 5.18535 5.19022 5.35566 5.39410 5.49476 5.55009 5.56383 5.63820 5.76314 5.95493 5.97239 6.12977 6.32335 6.40371 6.47491 6.48869 6.67034 7.05429 7.19899 7.35180 7.41608 7.61469 7.72135 7.89259 8.17131 8.61443 8.75841 9.06106 9.45025 10.93144 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022231 B = 0.004458 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.183080 B = 6280.038428 C = 7077.153917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.573 3.427 15 O -0.536 6.536 16 C -0.246 4.246 17 C -0.071 4.071 18 C -0.150 4.150 19 C -0.203 4.203 20 C -0.025 4.025 21 C -0.149 4.149 22 C -0.149 4.149 23 S 0.199 5.801 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.023 0.977 27 H 0.031 0.969 28 H 0.101 0.899 29 H 0.265 0.735 30 H 0.385 0.615 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.424 7.222 17.070 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.357 3.643 15 O -0.417 6.417 16 C -0.366 4.366 17 C -0.104 4.104 18 C -0.181 4.181 19 C -0.323 4.323 20 C -0.045 4.045 21 C -0.207 4.207 22 C -0.207 4.207 23 S 0.467 5.533 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.218 0.782 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.456 6.585 16.539 18.351 hybrid contribution -0.283 0.496 -0.107 0.582 sum -4.739 7.082 16.432 18.510 Atomic orbital electron populations 1.21851 0.98323 0.98134 1.01275 1.21941 0.92659 0.99663 1.02385 1.18845 0.94355 0.89247 0.80610 0.93043 1.21180 0.90578 1.39263 1.06408 0.92123 1.24874 0.98636 0.94722 0.95313 1.69885 1.35245 1.37471 1.09297 0.86507 0.84796 0.78342 0.77466 1.20125 1.21103 1.20159 1.46449 1.14018 1.55725 1.18686 1.16959 0.83080 0.78961 0.85328 1.90791 1.51611 1.60286 1.38971 1.25092 1.00257 1.11610 0.99675 1.20691 0.96733 0.96214 0.96745 1.19917 0.99482 1.04836 0.93838 1.24215 0.99597 1.07053 1.01420 1.19710 1.00207 0.96251 0.88331 1.21941 1.02359 0.97562 0.98789 1.21942 0.97549 0.99110 1.02066 1.82963 1.16381 1.50587 1.03374 0.93087 0.94298 0.95747 0.94969 0.88127 0.92469 0.78241 0.83254 0.84428 0.89600 0.92220 0.91959 0.92130 0.92114 0.91957 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 8.51 37.16 0.32 -2.84 16 2 C -0.13 -3.15 5.45 -26.74 -0.15 -3.29 16 3 C 0.27 6.92 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -14.23 8.73 -34.44 -0.30 -14.53 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.67 11.30 55.43 0.63 -24.04 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 13 N -0.70 -15.22 5.02 -56.28 -0.28 -15.50 16 14 C 0.57 12.10 6.35 -12.90 -0.08 12.02 16 15 O -0.54 -12.98 13.97 5.19 0.07 -12.90 16 16 C -0.25 -4.17 6.45 -36.79 -0.24 -4.41 16 17 C -0.07 -1.07 10.01 -40.43 -0.40 -1.47 16 18 C -0.15 -1.82 9.95 -41.41 -0.41 -2.23 16 19 C -0.20 -2.35 4.95 -35.86 -0.18 -2.53 16 20 C -0.02 -0.22 3.25 -91.78 -0.30 -0.52 16 21 C -0.15 -1.19 9.08 37.15 0.34 -0.85 16 22 C -0.15 -1.20 9.08 37.15 0.34 -0.87 16 23 S 0.20 2.65 21.37 -107.50 -2.30 0.35 16 24 H 0.05 1.23 7.84 -51.93 -0.41 0.82 16 25 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 7.46 7.65 -40.82 -0.31 7.15 16 31 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 32 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 LS Contribution 331.41 15.07 4.99 4.99 Total: -1.00 -29.65 331.41 -9.10 -38.75 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.88 Total: 5.83 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.32 Total: -13.04 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.34 Total: -39.54 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.90 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.30 Total: 0.35 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.65 -9.10 -38.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330872833.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.422 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds