Wall clock time and date at job start Tue Mar 31 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47266 * 2 1 4 4 H 1.09003 * 109.46698 * 305.01833 * 3 2 1 5 5 C 1.50703 * 109.47532 * 185.01755 * 3 2 1 6 6 H 1.07993 * 120.00229 * 245.90660 * 5 3 2 7 7 C 1.37881 * 119.99527 * 65.90424 * 5 3 2 8 8 N 1.31517 * 119.99593 * 198.02280 * 7 5 3 9 9 Si 1.86796 * 120.00105 * 18.02325 * 7 5 3 10 10 H 1.48509 * 109.46924 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47489 * 299.99783 * 9 7 5 12 12 H 1.48501 * 109.47248 * 60.00049 * 9 7 5 13 13 N 1.46505 * 109.47329 * 65.01825 * 3 2 1 14 14 C 1.30433 * 119.99659 * 236.09898 * 13 3 2 15 15 O 1.35330 * 119.99695 * 173.41779 * 14 13 3 16 16 C 1.46985 * 120.00433 * 353.42485 * 14 13 3 17 17 S 1.75831 * 125.45277 * 88.11781 * 16 14 13 18 18 C 1.70611 * 91.56970 * 179.97438 * 17 16 14 19 19 C 1.33645 * 110.95394 * 0.32239 * 18 17 16 20 20 C 1.36394 * 125.44566 * 268.42485 * 16 14 13 21 21 C 1.50704 * 123.34819 * 0.02562 * 20 16 14 22 22 C 1.52991 * 109.46971 * 123.68958 * 21 20 16 23 23 C 1.52999 * 109.46709 * 243.69139 * 21 20 16 24 24 H 1.08999 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47450 * 300.00194 * 1 2 3 26 26 H 1.08997 * 109.46631 * 60.00864 * 1 2 3 27 27 H 1.08996 * 109.47450 * 239.99806 * 2 1 3 28 28 H 1.09009 * 109.46793 * 119.99511 * 2 1 3 29 29 H 0.97001 * 119.99688 * 354.94624 * 8 7 5 30 30 H 0.96701 * 114.00094 * 185.06187 * 15 14 13 31 31 H 1.07998 * 124.52428 * 180.10788 * 18 17 16 32 32 H 1.07995 * 122.46501 * 179.76540 * 19 18 17 33 33 H 1.09000 * 109.46944 * 3.68671 * 21 20 16 34 34 H 1.08999 * 109.47618 * 299.99569 * 22 21 20 35 35 H 1.09000 * 109.47520 * 60.00067 * 22 21 20 36 36 H 1.09004 * 109.46892 * 180.02562 * 22 21 20 37 37 H 1.08998 * 109.47715 * 60.00127 * 23 21 20 38 38 H 1.09004 * 109.46670 * 179.97438 * 23 21 20 39 39 H 1.09000 * 109.47036 * 299.99476 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1243 6 1 4.1509 1.8017 0.6928 7 6 4.1384 0.9897 -1.2812 8 7 5.4103 0.6548 -1.2775 9 14 3.1402 0.8493 -2.8538 10 1 4.0073 0.3403 -3.9468 11 1 2.0096 -0.0895 -2.6404 12 1 2.6104 2.1860 -3.2248 13 7 1.6529 2.0974 1.2520 14 6 0.9609 3.2027 1.2229 15 8 0.4894 3.7362 2.3738 16 6 0.6932 3.8687 -0.0597 17 16 -0.6745 3.5385 -1.1144 18 6 -0.1481 4.7070 -2.2406 19 6 0.9848 5.2872 -1.8332 20 6 1.4691 4.8375 -0.6250 21 6 2.7320 5.3620 0.0083 22 6 3.8991 5.1940 -0.9664 23 6 2.5567 6.8445 0.3436 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.9467 0.7964 -0.4818 30 1 -0.0753 4.5107 2.2459 31 1 -0.6600 4.9435 -3.1617 32 1 1.4835 6.0530 -2.4087 33 1 2.9386 4.8048 0.9221 34 1 4.0241 4.1379 -1.2053 35 1 3.6925 5.7512 -1.8802 36 1 4.8127 5.5730 -0.5081 37 1 1.7251 6.9642 1.0381 38 1 3.4699 7.2237 0.8021 39 1 2.3500 7.4016 -0.5702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330876654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:53 Heat of formation + Delta-G solvation = -7.318652 kcal Electronic energy + Delta-G solvation = -21146.618609 eV Core-core repulsion = 18180.979726 eV Total energy + Delta-G solvation = -2965.638883 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.20331 -37.43695 -35.74379 -33.81236 -32.44735 -31.51521 -28.88542 -27.09984 -26.79225 -24.26583 -22.55118 -21.58698 -21.49640 -19.58817 -18.42192 -17.43286 -17.21901 -16.17439 -15.64349 -14.84696 -14.11860 -13.84156 -13.73553 -13.46042 -13.29541 -13.01307 -12.90831 -12.60282 -12.29613 -12.22402 -12.20883 -11.91034 -11.77952 -11.21969 -10.98350 -10.78370 -10.68724 -10.49257 -10.42267 -10.38075 -10.06104 -9.65085 -9.13697 -8.59295 -8.41230 -8.32183 -8.13280 -8.01006 -6.45784 -4.05388 1.05199 1.65475 2.16947 2.84645 3.17877 3.33890 3.38488 3.54841 4.04576 4.44570 4.82112 5.01364 5.21061 5.23046 5.34667 5.47032 5.65763 5.80846 5.91122 5.93391 5.94446 5.98908 6.12385 6.14383 6.17867 6.35525 6.40324 6.41409 6.62608 6.64775 6.68284 6.78482 6.87849 6.91829 7.13607 7.36876 7.76064 8.05455 8.39190 8.76857 9.07443 9.60745 10.93131 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.009414 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.772333 B = 2973.483106 C = 3411.337045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C 0.192 3.808 4 H 0.013 0.987 5 C -0.582 4.582 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.903 5.903 9 Si 1.028 2.972 10 H -0.283 1.283 11 H -0.272 1.272 12 H -0.280 1.280 13 N -0.474 5.474 14 C 0.364 3.636 15 O -0.471 6.471 16 C -0.236 4.236 17 S 0.172 5.828 18 C -0.250 4.250 19 C -0.129 4.129 20 C -0.044 4.044 21 C -0.036 4.036 22 C -0.144 4.144 23 C -0.138 4.138 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.269 0.731 30 H 0.395 0.605 31 H 0.161 0.839 32 H 0.137 0.863 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.096 10.917 -1.107 16.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.083 3.917 4 H 0.030 0.970 5 C -0.621 4.621 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.537 5.537 9 Si 0.856 3.144 10 H -0.209 1.209 11 H -0.198 1.198 12 H -0.206 1.206 13 N -0.202 5.202 14 C 0.131 3.869 15 O -0.265 6.265 16 C -0.357 4.357 17 S 0.440 5.560 18 C -0.387 4.387 19 C -0.161 4.161 20 C -0.058 4.058 21 C -0.056 4.056 22 C -0.201 4.201 23 C -0.196 4.196 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.179 0.821 32 H 0.155 0.845 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.565 8.324 -1.800 15.180 hybrid contribution 0.661 2.383 0.367 2.500 sum -11.904 10.707 -1.433 16.075 Atomic orbital electron populations 1.21894 0.98422 1.00236 1.00605 1.21953 0.92754 0.98712 1.02169 1.19756 0.97370 0.90194 0.84335 0.96952 1.21837 0.88960 1.48097 1.03174 0.92050 1.25539 0.97460 0.92790 1.00994 1.70847 1.08229 1.40929 1.33683 0.84278 0.75946 0.77515 0.76654 1.20912 1.19776 1.20649 1.71754 1.08508 1.06200 1.33723 1.20307 0.94476 0.91872 0.80198 1.84741 1.65849 1.47551 1.28408 1.24576 1.02503 1.05594 1.02990 1.83036 1.24433 1.36628 1.11898 1.24996 1.03429 1.04216 1.06083 1.19774 0.96523 1.03030 0.96780 1.19357 0.96475 0.95479 0.94457 1.19815 0.91048 0.95612 0.99150 1.21823 0.96307 1.04085 0.97901 1.21816 1.01424 0.95201 1.01142 0.93789 0.93398 0.93794 0.91465 0.92021 0.92058 0.75370 0.82099 0.84523 0.90013 0.90404 0.93326 0.92752 0.92966 0.92418 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.80 37.16 0.36 -2.59 16 2 C -0.12 -2.72 5.30 -26.73 -0.14 -2.87 16 3 C 0.19 4.72 1.74 -69.08 -0.12 4.60 16 4 H 0.01 0.32 4.46 -51.93 -0.23 0.08 16 5 C -0.58 -16.50 9.10 -34.44 -0.31 -16.81 16 6 H 0.06 1.93 8.06 -52.49 -0.42 1.51 16 7 C 0.04 1.09 5.30 -17.82 -0.09 0.99 16 8 N -0.90 -27.49 13.70 55.43 0.76 -26.73 16 9 Si 1.03 25.25 26.32 -169.99 -4.47 20.77 16 10 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.21 5.78 56.52 0.33 -5.88 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.47 -11.13 9.67 -54.08 -0.52 -11.65 16 14 C 0.36 7.08 6.93 -14.60 -0.10 6.98 16 15 O -0.47 -7.74 13.63 -17.68 -0.24 -7.98 16 16 C -0.24 -4.10 3.89 -36.70 -0.14 -4.25 16 17 S 0.17 2.56 22.68 -107.50 -2.44 0.12 16 18 C -0.25 -3.43 10.92 29.12 0.32 -3.12 16 19 C -0.13 -1.91 9.15 -41.38 -0.38 -2.29 16 20 C -0.04 -0.72 4.72 -105.48 -0.50 -1.22 16 21 C -0.04 -0.58 3.13 -91.77 -0.29 -0.87 16 22 C -0.14 -2.50 9.00 37.15 0.33 -2.16 16 23 C -0.14 -1.72 9.08 37.16 0.34 -1.38 16 24 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.07 1.60 4.95 -51.93 -0.26 1.35 16 28 H 0.06 1.48 8.14 -51.92 -0.42 1.05 16 29 H 0.27 8.22 8.73 -40.82 -0.36 7.87 16 30 H 0.40 4.19 8.81 45.56 0.40 4.59 16 31 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 32 H 0.14 1.75 7.75 -52.49 -0.41 1.34 16 33 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 34 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.05 0.74 7.58 -51.93 -0.39 0.34 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.05 0.61 7.97 -51.93 -0.41 0.20 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -32.20 332.24 -7.74 -39.94 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -5.11 Total: 5.50 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -0.72 Total: -24.98 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.24 Total: -38.38 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.24 Total: -7.98 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -4.47 Total: 20.77 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -2.44 Total: 0.12 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.20 -7.74 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330876654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.618 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds