Wall clock time and date at job start Tue Mar 31 2020 05:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47266 * 2 1 4 4 H 1.09003 * 109.46698 * 305.01833 * 3 2 1 5 5 C 1.50703 * 109.47532 * 185.01755 * 3 2 1 6 6 H 1.07993 * 120.00229 * 245.90660 * 5 3 2 7 7 C 1.37881 * 119.99527 * 65.90424 * 5 3 2 8 8 N 1.31517 * 119.99593 * 198.02280 * 7 5 3 9 9 Si 1.86796 * 120.00105 * 18.02325 * 7 5 3 10 10 H 1.48509 * 109.46924 * 179.97438 * 9 7 5 11 11 H 1.48497 * 109.47489 * 299.99783 * 9 7 5 12 12 H 1.48501 * 109.47248 * 60.00049 * 9 7 5 13 13 N 1.46505 * 109.47329 * 65.01825 * 3 2 1 14 14 C 1.30433 * 119.99659 * 236.09898 * 13 3 2 15 15 O 1.35330 * 119.99695 * 173.41779 * 14 13 3 16 16 C 1.46985 * 120.00433 * 353.42485 * 14 13 3 17 17 S 1.75831 * 125.45277 * 88.11781 * 16 14 13 18 18 C 1.70611 * 91.56970 * 179.97438 * 17 16 14 19 19 C 1.33645 * 110.95394 * 0.32239 * 18 17 16 20 20 C 1.36394 * 125.44566 * 268.42485 * 16 14 13 21 21 C 1.50704 * 123.34819 * 0.02562 * 20 16 14 22 22 C 1.52991 * 109.46971 * 123.68958 * 21 20 16 23 23 C 1.52999 * 109.46709 * 243.69139 * 21 20 16 24 24 H 1.08999 * 109.47147 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47450 * 300.00194 * 1 2 3 26 26 H 1.08997 * 109.46631 * 60.00864 * 1 2 3 27 27 H 1.08996 * 109.47450 * 239.99806 * 2 1 3 28 28 H 1.09009 * 109.46793 * 119.99511 * 2 1 3 29 29 H 0.97001 * 119.99688 * 354.94624 * 8 7 5 30 30 H 0.96701 * 114.00094 * 185.06187 * 15 14 13 31 31 H 1.07998 * 124.52428 * 180.10788 * 18 17 16 32 32 H 1.07995 * 122.46501 * 179.76540 * 19 18 17 33 33 H 1.09000 * 109.46944 * 3.68671 * 21 20 16 34 34 H 1.08999 * 109.47618 * 299.99569 * 22 21 20 35 35 H 1.09000 * 109.47520 * 60.00067 * 22 21 20 36 36 H 1.09004 * 109.46892 * 180.02562 * 22 21 20 37 37 H 1.08998 * 109.47715 * 60.00127 * 23 21 20 38 38 H 1.09004 * 109.46670 * 179.97438 * 23 21 20 39 39 H 1.09000 * 109.47036 * 299.99476 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9815 -0.8417 5 6 3.5419 1.4443 -0.1243 6 1 4.1509 1.8017 0.6928 7 6 4.1384 0.9897 -1.2812 8 7 5.4103 0.6548 -1.2775 9 14 3.1402 0.8493 -2.8538 10 1 4.0073 0.3403 -3.9468 11 1 2.0096 -0.0895 -2.6404 12 1 2.6104 2.1860 -3.2248 13 7 1.6529 2.0974 1.2520 14 6 0.9609 3.2027 1.2229 15 8 0.4894 3.7362 2.3738 16 6 0.6932 3.8687 -0.0597 17 16 -0.6745 3.5385 -1.1144 18 6 -0.1481 4.7070 -2.2406 19 6 0.9848 5.2872 -1.8332 20 6 1.4691 4.8375 -0.6250 21 6 2.7320 5.3620 0.0083 22 6 3.8991 5.1940 -0.9664 23 6 2.5567 6.8445 0.3436 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.9467 0.7964 -0.4818 30 1 -0.0753 4.5107 2.2459 31 1 -0.6600 4.9435 -3.1617 32 1 1.4835 6.0530 -2.4087 33 1 2.9386 4.8048 0.9221 34 1 4.0241 4.1379 -1.2053 35 1 3.6925 5.7512 -1.8802 36 1 4.8127 5.5730 -0.5081 37 1 1.7251 6.9642 1.0381 38 1 3.4699 7.2237 0.8021 39 1 2.3500 7.4016 -0.5702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330876654.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:52 Heat of formation + Delta-G solvation = -31.935621 kcal Electronic energy + Delta-G solvation = -21147.686081 eV Core-core repulsion = 18180.979726 eV Total energy + Delta-G solvation = -2966.706355 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54239 -38.79019 -37.49285 -35.03026 -34.49726 -33.20538 -30.22289 -28.94406 -28.01403 -25.55570 -24.45773 -23.09491 -22.77964 -21.10452 -20.12067 -19.40203 -18.44631 -17.47105 -17.34815 -16.06546 -15.79794 -15.41215 -15.08429 -14.95552 -14.65296 -14.48670 -14.38144 -14.30113 -14.10766 -13.62154 -13.44897 -13.36227 -12.99189 -12.77827 -12.43520 -12.37843 -12.31132 -12.02839 -11.88362 -11.74475 -11.60072 -11.49034 -11.18201 -10.55292 -10.05166 -9.96636 -9.60281 -9.30061 -8.73997 -6.35287 -0.14410 0.40877 1.03236 1.35873 1.43171 1.61547 1.64840 1.70251 2.41353 2.63523 3.03402 3.45793 3.85653 3.95851 4.25258 4.28135 4.29660 4.38424 4.47354 4.52757 4.60745 4.74944 4.78509 4.79206 4.90307 4.93955 5.07763 5.10099 5.14650 5.18944 5.23555 5.37475 5.41168 5.46922 5.54110 5.58402 5.92120 6.01643 6.44785 6.56492 7.29640 7.50252 8.61224 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.013922 B = 0.009414 C = 0.008206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.772333 B = 2973.483106 C = 3411.337045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.206 3.794 4 H 0.021 0.979 5 C -0.579 4.579 6 H 0.006 0.994 7 C -0.007 4.007 8 N -0.934 5.934 9 Si 1.061 2.939 10 H -0.284 1.284 11 H -0.239 1.239 12 H -0.260 1.260 13 N -0.540 5.540 14 C 0.396 3.604 15 O -0.474 6.474 16 C -0.280 4.280 17 S 0.202 5.798 18 C -0.232 4.232 19 C -0.146 4.146 20 C -0.044 4.044 21 C -0.036 4.036 22 C -0.138 4.138 23 C -0.128 4.128 24 H 0.069 0.931 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.039 0.961 29 H 0.250 0.750 30 H 0.421 0.579 31 H 0.199 0.801 32 H 0.160 0.840 33 H 0.041 0.959 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.584 12.769 -3.228 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.159 4.159 3 C 0.097 3.903 4 H 0.038 0.962 5 C -0.618 4.618 6 H 0.025 0.975 7 C -0.206 4.206 8 N -0.570 5.570 9 Si 0.882 3.118 10 H -0.210 1.210 11 H -0.164 1.164 12 H -0.184 1.184 13 N -0.270 5.270 14 C 0.164 3.836 15 O -0.272 6.272 16 C -0.400 4.400 17 S 0.470 5.530 18 C -0.369 4.369 19 C -0.177 4.177 20 C -0.059 4.059 21 C -0.057 4.057 22 C -0.196 4.196 23 C -0.186 4.186 24 H 0.088 0.912 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.277 0.723 31 H 0.216 0.784 32 H 0.178 0.822 33 H 0.059 0.941 34 H 0.042 0.958 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.095 10.212 -3.878 19.452 hybrid contribution 1.725 1.968 1.157 2.861 sum -14.370 12.180 -2.721 19.033 Atomic orbital electron populations 1.21767 0.94856 1.02140 1.01179 1.21889 0.95982 0.97459 1.00621 1.19421 0.94176 0.91299 0.85451 0.96206 1.21921 0.91559 1.46937 1.01350 0.97520 1.26914 0.97517 0.91973 1.04192 1.70977 1.09440 1.43770 1.32828 0.83906 0.75802 0.79303 0.72791 1.21030 1.16368 1.18443 1.71656 1.12719 1.09613 1.33047 1.20423 0.91234 0.90197 0.81707 1.84697 1.65966 1.48743 1.27808 1.24453 1.05221 1.07081 1.03268 1.82901 1.22368 1.36703 1.11065 1.25483 1.02572 1.02305 1.06503 1.19957 0.97307 1.04214 0.96219 1.19544 0.95959 0.95142 0.95272 1.19773 0.90911 0.97963 0.97045 1.21753 0.97385 1.00804 0.99636 1.21746 1.02277 0.92071 1.02490 0.91241 0.93573 0.92367 0.92352 0.94253 0.94055 0.72345 0.78414 0.82233 0.94080 0.95762 0.90509 0.92315 0.91797 0.91872 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.80 71.98 0.71 -4.42 16 2 C -0.12 -5.61 5.30 30.59 0.16 -5.45 16 3 C 0.21 10.28 1.74 44.24 0.08 10.36 16 4 H 0.02 0.98 4.46 -2.39 -0.01 0.97 16 5 C -0.58 -34.72 9.10 25.60 0.23 -34.49 16 6 H 0.01 0.44 8.06 -2.91 -0.02 0.42 16 7 C -0.01 -0.43 5.30 84.66 0.45 0.01 16 8 N -0.93 -59.90 13.70 21.45 0.29 -59.61 16 9 Si 1.06 50.42 26.32 68.60 1.81 52.23 16 10 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 11 H -0.24 -10.12 5.78 99.48 0.57 -9.54 16 12 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 13 N -0.54 -26.09 9.67 -438.99 -4.24 -30.34 16 14 C 0.40 15.33 6.93 87.19 0.60 15.93 16 15 O -0.47 -15.23 13.63 -86.19 -1.17 -16.41 16 16 C -0.28 -9.26 3.89 24.13 0.09 -9.16 16 17 S 0.20 5.23 22.68 -56.49 -1.28 3.95 16 18 C -0.23 -5.18 10.92 66.78 0.73 -4.45 16 19 C -0.15 -3.72 9.15 21.10 0.19 -3.52 16 20 C -0.04 -1.38 4.72 -20.42 -0.10 -1.48 16 21 C -0.04 -1.17 3.13 -11.54 -0.04 -1.20 16 22 C -0.14 -4.84 9.00 71.98 0.65 -4.20 16 23 C -0.13 -2.90 9.08 71.98 0.65 -2.25 16 24 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 25 H 0.05 1.67 7.75 -2.39 -0.02 1.65 16 26 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.06 2.74 4.95 -2.39 -0.01 2.73 16 28 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.25 16.50 8.73 -92.71 -0.81 15.69 16 30 H 0.42 8.13 8.81 -74.06 -0.65 7.48 16 31 H 0.20 2.95 8.06 -2.91 -0.02 2.92 16 32 H 0.16 3.29 7.75 -2.91 -0.02 3.27 16 33 H 0.04 1.64 7.12 -2.39 -0.02 1.62 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 2.19 7.58 -2.39 -0.02 2.18 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.40 7.97 -2.39 -0.02 1.39 16 Total: -1.00 -75.76 332.24 0.04 -75.72 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: 0.23 Total: 18.78 kcal Atomic # 6 Polarization: -48.73 SS G_CDS: 4.41 Total: -44.32 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -3.95 Total: -89.95 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.17 Total: -16.41 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 1.81 Total: 52.23 kcal Atomic # 16 Polarization: 5.23 SS G_CDS: -1.28 Total: 3.95 kcal Total: -75.76 0.04 -75.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330876654.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.787 kcal (2) G-P(sol) polarization free energy of solvation -75.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds