Wall clock time and date at job start Tue Mar 31 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 C 1.50707 * 109.47116 * 119.99972 * 2 1 3 5 5 H 1.07992 * 119.99904 * 120.00233 * 4 2 1 6 6 C 1.37878 * 119.99607 * 299.99824 * 4 2 1 7 7 N 1.31512 * 120.00510 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99487 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47362 * 60.00362 * 8 6 4 10 10 H 1.48505 * 109.46718 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47190 * 300.00243 * 8 6 4 12 12 N 1.46505 * 109.47453 * 239.99591 * 2 1 3 13 13 C 1.34774 * 119.99363 * 84.99629 * 12 2 1 14 14 O 1.21282 * 120.00454 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99562 * 180.02562 * 13 12 2 16 16 H 1.08999 * 109.47301 * 60.00361 * 15 13 12 17 17 C 1.53004 * 109.47212 * 300.00046 * 15 13 12 18 18 O 1.42903 * 109.46802 * 180.02562 * 15 13 12 19 19 C 1.35960 * 116.99828 * 205.00561 * 18 15 13 20 20 C 1.38664 * 120.06093 * 354.51008 * 19 18 15 21 21 C 1.38183 * 119.96918 * 179.72106 * 20 19 18 22 22 C 1.38260 * 120.09231 * 0.55350 * 21 20 19 23 23 C 1.38255 * 120.12756 * 359.72466 * 22 21 20 24 24 C 1.38330 * 120.03171 * 359.97438 * 23 22 21 25 25 F 1.35095 * 120.05330 * 180.02562 * 24 23 22 26 26 H 1.09007 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47301 * 60.00302 * 1 2 3 28 28 H 1.08997 * 109.46878 * 299.99893 * 1 2 3 29 29 H 0.96994 * 119.99933 * 179.97438 * 7 6 4 30 30 H 0.96998 * 120.00307 * 265.00667 * 12 2 1 31 31 H 1.08999 * 109.47245 * 300.00349 * 17 15 13 32 32 H 1.08994 * 109.46676 * 60.00108 * 17 15 13 33 33 H 1.08997 * 109.46809 * 180.02562 * 17 15 13 34 34 H 1.08000 * 120.01821 * 359.97438 * 20 19 18 35 35 H 1.07996 * 119.95462 * 180.27787 * 21 20 19 36 36 H 1.07995 * 119.93748 * 179.74501 * 22 21 20 37 37 H 1.07999 * 119.98494 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0080 9 1 3.8075 -1.1189 4.0078 10 1 1.8269 -0.4198 5.2205 11 1 1.8281 -2.5197 4.0082 12 7 2.0184 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3571 14 8 1.8589 1.1585 -2.4115 15 6 2.6489 -0.7289 -3.5877 16 1 1.9761 -1.5508 -3.8325 17 6 4.0514 -1.2799 -3.3222 18 8 2.6976 0.1895 -4.6814 19 6 2.6121 -0.3357 -5.9326 20 6 2.5989 -1.7110 -6.1092 21 6 2.5062 -2.2427 -7.3813 22 6 2.4381 -1.4053 -8.4794 23 6 2.4568 -0.0335 -8.3082 24 6 2.5432 0.5044 -7.0367 25 9 2.5610 1.8448 -6.8689 26 1 -0.3633 -1.0278 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 0.7082 1.1609 3.4844 30 1 2.2490 -1.6319 -1.1526 31 1 4.7243 -0.4580 -3.0773 32 1 4.0146 -1.9802 -2.4878 33 1 4.4145 -1.7934 -4.2124 34 1 2.6569 -2.3663 -5.2528 35 1 2.4913 -3.3138 -7.5183 36 1 2.3698 -1.8235 -9.4727 37 1 2.4039 0.6184 -9.1676 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338079307.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:19 Heat of formation + Delta-G solvation = -95.616805 kcal Electronic energy + Delta-G solvation = -21644.949312 eV Core-core repulsion = 18109.268358 eV Total energy + Delta-G solvation = -3535.680954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.76281 -40.47206 -38.86263 -37.34115 -34.81621 -32.83912 -31.79456 -30.85481 -29.75545 -28.63686 -25.31747 -24.73783 -23.17863 -22.54233 -20.95186 -19.48196 -18.63325 -17.69557 -17.05480 -16.44746 -16.01385 -15.62853 -15.44549 -15.26773 -14.89821 -14.56024 -14.40600 -13.80482 -13.55880 -13.12984 -13.00363 -12.55478 -12.42991 -12.34509 -12.09916 -11.79012 -11.64584 -11.24727 -11.17277 -11.05855 -10.94440 -10.76832 -10.36226 -10.26979 -9.19279 -9.10817 -9.03203 -8.59332 -8.31151 -8.00870 -6.15661 -4.25837 0.91927 1.07382 2.76662 3.20508 3.23389 3.28908 3.29819 3.39018 3.98075 4.15266 4.32690 4.53609 4.62121 4.70593 4.94098 5.00418 5.02431 5.14536 5.17101 5.29649 5.54330 5.60018 5.78288 5.85213 5.96734 6.04766 6.15714 6.46599 6.77900 6.91580 7.09676 7.18605 7.37087 7.50469 7.64027 7.86189 8.10220 8.54808 8.72026 9.00313 9.41500 10.90316 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.036089 B = 0.003492 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.678136 B = 8016.385101 C = 8382.384541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.266 3.734 3 H 0.050 0.950 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.702 5.702 13 C 0.505 3.495 14 O -0.529 6.529 15 C 0.062 3.938 16 H 0.095 0.905 17 C -0.175 4.175 18 O -0.274 6.274 19 C 0.105 3.895 20 C -0.189 4.189 21 C -0.089 4.089 22 C -0.136 4.136 23 C -0.117 4.117 24 C 0.068 3.932 25 F -0.130 7.130 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.092 0.908 29 H 0.266 0.734 30 H 0.389 0.611 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -8.848 -18.791 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.068 0.932 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.352 5.352 13 C 0.288 3.712 14 O -0.405 6.405 15 C 0.002 3.998 16 H 0.113 0.887 17 C -0.232 4.232 18 O -0.186 6.186 19 C 0.058 3.942 20 C -0.207 4.207 21 C -0.108 4.108 22 C -0.154 4.154 23 C -0.136 4.136 24 C 0.048 3.952 25 F -0.108 7.108 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.221 0.779 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.620 -7.580 -18.562 20.374 hybrid contribution 0.378 -0.925 0.939 1.371 sum 3.998 -8.505 -17.622 19.972 Atomic orbital electron populations 1.22096 0.98339 0.99205 1.01070 1.18799 0.91101 0.94075 0.79536 0.93190 1.21149 1.32748 1.13346 0.90212 0.92034 1.24891 0.94761 0.94935 0.99076 1.69888 1.35610 1.22354 1.24109 0.86486 0.79175 0.79547 0.81751 1.20136 1.21096 1.20140 1.46448 1.65315 1.13538 1.09909 1.19836 0.79541 0.87726 0.84122 1.90718 1.49730 1.15566 1.84494 1.22464 0.99057 0.92070 0.86163 0.88705 1.22332 0.95260 1.02491 1.03146 1.86325 1.86878 1.34758 1.10672 1.19183 0.97843 0.92132 0.85070 1.21283 1.07181 0.92918 0.99351 1.21008 0.97926 1.00250 0.91577 1.20897 1.02897 0.92245 0.99386 1.21021 1.01313 0.96458 0.94832 1.17048 1.08764 0.77267 0.92081 1.91530 1.94118 1.28958 1.96203 0.95371 0.96592 0.88982 0.92417 0.77854 0.90523 0.89799 0.91192 0.84168 0.85082 0.84990 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 2 C 0.27 6.72 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.95 8.73 -34.44 -0.30 -14.25 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 N -0.70 -14.26 4.96 -54.93 -0.27 -14.54 16 13 C 0.51 10.31 7.20 -10.98 -0.08 10.23 16 14 O -0.53 -13.48 16.16 -14.35 -0.23 -13.71 16 15 C 0.06 0.94 2.65 -27.88 -0.07 0.87 16 16 H 0.10 1.16 6.31 -51.93 -0.33 0.83 16 17 C -0.17 -2.09 9.07 37.16 0.34 -1.76 16 18 O -0.27 -4.74 9.20 -39.52 -0.36 -5.10 16 19 C 0.11 1.48 6.61 -39.18 -0.26 1.22 16 20 C -0.19 -2.00 8.25 -39.44 -0.33 -2.32 16 21 C -0.09 -0.75 10.04 -39.59 -0.40 -1.15 16 22 C -0.14 -1.12 10.04 -39.57 -0.40 -1.51 16 23 C -0.12 -1.18 10.02 -39.54 -0.40 -1.58 16 24 C 0.07 0.94 7.31 -39.30 -0.29 0.65 16 25 F -0.13 -2.09 17.11 2.25 0.04 -2.05 16 26 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.39 6.53 7.96 -40.82 -0.32 6.20 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.87 7.56 -51.93 -0.39 0.48 16 33 H 0.07 0.67 6.92 -51.93 -0.36 0.32 16 34 H 0.14 1.23 5.43 -52.49 -0.28 0.94 16 35 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 319.11 15.07 4.81 4.81 Total: -1.00 -32.67 319.11 -7.00 -39.67 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.48 Total: 4.43 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.11 Total: -4.70 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.35 Total: -38.65 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.60 Total: -18.82 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.67 -7.00 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338079307.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.948 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds