Wall clock time and date at job start Tue Mar 31 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47505 * 2 1 4 4 O 1.42899 * 109.46916 * 119.99961 * 2 1 3 5 5 C 1.35950 * 117.00358 * 275.00825 * 4 2 1 6 6 C 1.38666 * 120.05798 * 5.49041 * 5 4 2 7 7 C 1.38186 * 119.96791 * 179.97438 * 6 5 4 8 8 C 1.38264 * 120.09635 * 359.97438 * 7 6 5 9 9 C 1.38256 * 120.12156 * 0.02562 * 8 7 6 10 10 C 1.38326 * 120.03498 * 0.25784 * 9 8 7 11 11 F 1.35105 * 120.04967 * 179.72392 * 10 9 8 12 12 C 1.50702 * 109.46657 * 239.99431 * 2 1 3 13 13 O 1.21280 * 120.00266 * 244.99905 * 12 2 1 14 14 N 1.34773 * 119.99669 * 65.00926 * 12 2 1 15 15 C 1.46500 * 119.99911 * 179.97438 * 14 12 2 16 16 H 1.08999 * 109.47117 * 324.99992 * 15 14 12 17 17 C 1.53000 * 109.47239 * 84.99787 * 15 14 12 18 18 C 1.50697 * 109.47296 * 204.99379 * 15 14 12 19 19 H 1.07998 * 120.00029 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00073 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99920 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99863 * 180.02562 * 20 18 15 23 23 H 1.48495 * 109.47135 * 60.00154 * 22 20 18 24 24 H 1.48497 * 109.47089 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46851 * 300.00111 * 22 20 18 26 26 H 1.08998 * 109.47505 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46579 * 300.00102 * 1 2 3 28 28 H 1.08995 * 109.46995 * 60.00100 * 1 2 3 29 29 H 1.07995 * 120.01882 * 359.95446 * 6 5 4 30 30 H 1.07995 * 119.95179 * 179.97438 * 7 6 5 31 31 H 1.07993 * 119.93952 * 180.02562 * 8 7 6 32 32 H 1.08004 * 119.98301 * 179.97438 * 9 8 7 33 33 H 0.96999 * 120.00403 * 359.97438 * 14 12 2 34 34 H 1.09005 * 109.46907 * 300.00206 * 17 15 14 35 35 H 1.09003 * 109.47610 * 60.00022 * 17 15 14 36 36 H 1.08997 * 109.47502 * 180.02562 * 17 15 14 37 37 H 0.97001 * 119.99765 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1124 0.0628 2.3046 6 6 1.6593 1.3731 2.3287 7 6 1.7675 2.1197 3.4864 8 6 2.3265 1.5620 4.6214 9 6 2.7795 0.2559 4.6017 10 6 2.6791 -0.4943 3.4439 11 9 3.1268 -1.7689 3.4228 12 6 2.0323 -0.7106 -1.2304 13 8 2.6529 -1.7468 -1.1215 14 7 1.7919 -0.1943 -2.4519 15 6 2.2806 -0.8847 -3.6481 16 1 3.2408 -1.3524 -3.4308 17 6 1.2731 -1.9582 -4.0647 18 6 2.4478 0.1090 -4.7686 19 1 2.2139 1.1507 -4.6059 20 6 2.9005 -0.3116 -6.0012 21 7 3.1858 -1.5801 -6.1992 22 14 3.1084 0.9204 -7.3900 23 1 4.0861 1.9622 -6.9852 24 1 3.6037 0.2205 -8.6024 25 1 1.8002 1.5576 -7.6864 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.2223 1.8100 1.4430 30 1 1.4149 3.1403 3.5047 31 1 2.4095 2.1477 5.5249 32 1 3.2162 -0.1773 5.4894 33 1 1.2953 0.6344 -2.5392 34 1 1.1521 -2.6770 -3.2542 35 1 0.3128 -1.4906 -4.2820 36 1 1.6369 -2.4722 -4.9544 37 1 3.5038 -1.8760 -7.0665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338079308.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:26 Heat of formation + Delta-G solvation = -95.722536 kcal Electronic energy + Delta-G solvation = -21645.319166 eV Core-core repulsion = 18109.633627 eV Total energy + Delta-G solvation = -3535.685539 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.75810 -40.47068 -38.86051 -37.34002 -34.81459 -32.81518 -31.80609 -30.84960 -29.74778 -28.68212 -25.29913 -24.73806 -23.17665 -22.53368 -20.97204 -19.46936 -18.63732 -17.68422 -17.05142 -16.43600 -16.00433 -15.68788 -15.43370 -15.14722 -14.98330 -14.55839 -14.41228 -13.89973 -13.49531 -13.08898 -12.97156 -12.50689 -12.48109 -12.41709 -12.07994 -11.80264 -11.64526 -11.24525 -11.13690 -11.09672 -10.96535 -10.73818 -10.36577 -10.26865 -9.19009 -9.10712 -9.03038 -8.59482 -8.30572 -8.01022 -6.15698 -4.25869 0.92383 1.07686 2.77060 3.19859 3.23339 3.28891 3.29825 3.39379 3.98131 4.15492 4.32897 4.54024 4.62495 4.70750 4.94244 5.00748 5.02528 5.14335 5.17141 5.29984 5.52731 5.58441 5.78461 5.85567 5.97134 6.01842 6.16082 6.46828 6.78255 6.92076 7.09784 7.18799 7.37256 7.50572 7.64064 7.86357 8.10345 8.54843 8.71989 9.00353 9.41459 10.90260 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.030380 B = 0.003563 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.424485 B = 7857.113057 C = 8192.796993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.062 3.938 3 H 0.095 0.905 4 O -0.275 6.275 5 C 0.105 3.895 6 C -0.188 4.188 7 C -0.089 4.089 8 C -0.136 4.136 9 C -0.117 4.117 10 C 0.068 3.932 11 F -0.130 7.130 12 C 0.506 3.494 13 O -0.529 6.529 14 N -0.702 5.702 15 C 0.266 3.734 16 H 0.050 0.950 17 C -0.148 4.148 18 C -0.536 4.536 19 H 0.061 0.939 20 C 0.067 3.933 21 N -0.882 5.882 22 Si 0.903 3.097 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.276 1.276 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.389 0.611 34 H 0.015 0.985 35 H 0.027 0.973 36 H 0.091 0.909 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.653 8.836 18.097 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.002 3.998 3 H 0.113 0.887 4 O -0.186 6.186 5 C 0.057 3.943 6 C -0.207 4.207 7 C -0.108 4.108 8 C -0.154 4.154 9 C -0.136 4.136 10 C 0.048 3.952 11 F -0.108 7.108 12 C 0.288 3.712 13 O -0.405 6.405 14 N -0.352 5.352 15 C 0.165 3.835 16 H 0.068 0.932 17 C -0.206 4.206 18 C -0.575 4.575 19 H 0.079 0.921 20 C -0.137 4.137 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.150 0.850 32 H 0.158 0.842 33 H 0.221 0.779 34 H 0.034 0.966 35 H 0.046 0.954 36 H 0.110 0.890 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.055 7.659 17.940 20.151 hybrid contribution -0.141 1.025 -0.901 1.372 sum -5.195 8.685 17.039 19.817 Atomic orbital electron populations 1.22314 0.92785 1.04519 1.03509 1.22460 0.95718 0.97149 0.84451 0.88721 1.86321 1.80570 1.36353 1.15401 1.19182 0.96739 0.91389 0.86945 1.21284 1.05636 0.93133 1.00652 1.21011 0.97826 0.99841 0.92081 1.20899 1.00872 0.94559 0.99078 1.21021 1.01305 0.94849 0.96455 1.17050 1.03471 0.81183 0.93452 1.91532 1.87019 1.35332 1.96933 1.19830 0.81196 0.86020 0.84166 1.90717 1.40185 1.23292 1.86292 1.46444 1.55957 1.26918 1.05901 1.18797 0.94065 0.91014 0.79636 0.93231 1.22088 0.98385 0.98657 1.01503 1.21151 1.46443 0.94222 0.95669 0.92051 1.24893 0.94770 0.95464 0.98539 1.69893 1.43661 1.14338 1.24058 0.86484 0.78534 0.80909 0.81020 1.20149 1.21089 1.20132 0.90604 0.91146 0.89862 0.84159 0.85076 0.84987 0.84168 0.77864 0.96567 0.95358 0.89022 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.13 37.16 0.34 -1.71 16 2 C 0.06 0.94 2.64 -27.88 -0.07 0.87 16 3 H 0.10 1.17 6.31 -51.93 -0.33 0.84 16 4 O -0.27 -4.74 9.20 -39.44 -0.36 -5.11 16 5 C 0.10 1.48 6.61 -39.18 -0.26 1.22 16 6 C -0.19 -2.01 8.24 -39.44 -0.33 -2.33 16 7 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 8 C -0.14 -1.12 10.04 -39.57 -0.40 -1.52 16 9 C -0.12 -1.19 10.02 -39.54 -0.40 -1.59 16 10 C 0.07 0.95 7.31 -39.30 -0.29 0.66 16 11 F -0.13 -2.09 17.11 2.25 0.04 -2.05 16 12 C 0.51 10.32 7.14 -10.99 -0.08 10.24 16 13 O -0.53 -13.48 16.17 -14.30 -0.23 -13.71 16 14 N -0.70 -14.27 5.03 -54.93 -0.28 -14.55 16 15 C 0.27 6.72 2.56 -69.08 -0.18 6.55 16 16 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 17 C -0.15 -3.66 9.26 37.16 0.34 -3.31 16 18 C -0.54 -13.98 8.73 -34.44 -0.30 -14.28 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 21 N -0.88 -24.74 11.32 55.43 0.63 -24.12 16 22 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.07 0.67 6.91 -51.93 -0.36 0.31 16 28 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 29 H 0.14 1.24 5.43 -52.49 -0.28 0.95 16 30 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 31 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.39 6.53 8.32 -40.82 -0.34 6.19 16 34 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -32.70 319.91 -7.02 -39.72 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -4.51 Total: 4.35 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -2.10 Total: -4.68 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.35 Total: -38.66 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.59 Total: -18.81 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.70 -7.02 -39.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338079308.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.007 kcal (2) G-P(sol) polarization free energy of solvation -32.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds