Wall clock time and date at job start Tue Mar 31 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46812 * 2 1 4 4 C 1.50703 * 109.47304 * 120.00308 * 2 1 3 5 5 H 1.07994 * 119.99399 * 120.00023 * 4 2 1 6 6 C 1.37874 * 119.99789 * 299.99650 * 4 2 1 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47181 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46716 * 120.00463 * 8 6 4 11 11 H 1.48500 * 109.46999 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.46831 * 240.00445 * 2 1 3 13 13 C 1.34774 * 120.00251 * 84.99772 * 12 2 1 14 14 O 1.21282 * 119.99905 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99967 * 180.02562 * 13 12 2 16 16 H 1.09007 * 109.47090 * 299.99748 * 15 13 12 17 17 C 1.52995 * 109.47467 * 60.00097 * 15 13 12 18 18 O 1.42903 * 109.47420 * 185.00298 * 17 15 13 19 19 C 1.50707 * 109.47107 * 180.02562 * 15 13 12 20 20 C 1.38241 * 119.97127 * 299.72837 * 19 15 13 21 21 C 1.38199 * 120.02509 * 179.72846 * 20 19 15 22 22 C 1.38458 * 119.97087 * 0.51977 * 21 20 19 23 23 F 1.35103 * 120.02642 * 179.72808 * 22 21 20 24 24 C 1.38463 * 119.94959 * 359.74787 * 22 21 20 25 25 C 1.38196 * 119.97383 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.46935 * 299.99658 * 1 2 3 27 27 H 1.08992 * 109.47061 * 59.99633 * 1 2 3 28 28 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 29 29 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 30 30 H 0.97006 * 119.99584 * 264.99701 * 12 2 1 31 31 H 1.09003 * 109.47048 * 304.99941 * 17 15 13 32 32 H 1.08994 * 109.47223 * 64.99792 * 17 15 13 33 33 H 0.96698 * 113.99724 * 180.02562 * 18 17 15 34 34 H 1.08002 * 119.99106 * 359.97278 * 20 19 15 35 35 H 1.07993 * 120.01739 * 180.29135 * 21 20 19 36 36 H 1.08001 * 120.01069 * 179.97438 * 24 22 21 37 37 H 1.08003 * 119.98584 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1205 4.0078 9 1 3.1466 -2.2871 3.6036 10 1 3.1468 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6487 -0.7287 -3.5878 16 1 3.6479 -1.1213 -3.3988 17 6 1.7042 -1.8822 -3.9316 18 8 2.2405 -2.6269 -5.0269 19 6 2.7000 0.2399 -4.7413 20 6 1.5441 0.8653 -5.1699 21 6 1.5909 1.7579 -6.2239 22 6 2.7943 2.0176 -6.8575 23 9 2.8403 2.8859 -7.8916 24 6 3.9504 1.3864 -6.4309 25 6 3.9020 0.4977 -5.3737 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7084 1.1607 3.4844 30 1 2.2490 -1.6318 -1.1527 31 1 1.5982 -2.5354 -3.0654 32 1 0.7282 -1.4828 -4.2070 33 1 1.6922 -3.3752 -5.2997 34 1 0.6047 0.6592 -4.6784 35 1 0.6886 2.2500 -6.5556 36 1 4.8896 1.5879 -6.9247 37 1 4.8036 0.0049 -5.0410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339271138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:39 Heat of formation + Delta-G solvation = -115.127629 kcal Electronic energy + Delta-G solvation = -21757.873196 eV Core-core repulsion = 18221.346190 eV Total energy + Delta-G solvation = -3536.527007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.82101 -40.03126 -38.25878 -36.81357 -34.89118 -32.93385 -32.29751 -31.05624 -29.34373 -27.87692 -25.31015 -24.08813 -22.95306 -22.20730 -20.58020 -19.34785 -17.93253 -17.64413 -16.71533 -16.52362 -15.87421 -15.58583 -15.42629 -15.06151 -14.88599 -14.42365 -14.12248 -13.64177 -13.44717 -13.22389 -13.16106 -12.80900 -12.45352 -12.04216 -11.83682 -11.59868 -11.27152 -11.11634 -11.00861 -10.86250 -10.74035 -10.35850 -10.29423 -10.10348 -9.21344 -9.09968 -8.93812 -8.60935 -8.43256 -8.00567 -6.17310 -4.26934 1.23475 1.36352 3.15918 3.20533 3.28511 3.30799 3.60446 3.93991 4.26473 4.32850 4.41092 4.67159 4.78893 4.94202 5.08822 5.14314 5.15530 5.35334 5.38002 5.49304 5.56696 5.75430 5.98844 6.09131 6.19288 6.32546 6.62865 6.75318 6.88107 6.97361 7.07934 7.36451 7.46962 7.49647 7.63329 7.84888 8.08970 8.56231 8.71562 9.01086 9.40841 10.88637 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.003875 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.489746 B = 7224.897615 C = 7622.403472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.062 0.938 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.508 3.492 14 O -0.539 6.539 15 C -0.074 4.074 16 H 0.109 0.891 17 C 0.089 3.911 18 O -0.567 6.567 19 C -0.056 4.056 20 C -0.056 4.056 21 C -0.155 4.155 22 C 0.089 3.911 23 F -0.146 7.146 24 C -0.157 4.157 25 C -0.078 4.078 26 H 0.090 0.910 27 H 0.014 0.986 28 H 0.026 0.974 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.380 0.620 34 H 0.128 0.872 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -5.441 -15.395 16.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.354 5.354 13 C 0.291 3.709 14 O -0.416 6.416 15 C -0.095 4.095 16 H 0.127 0.873 17 C 0.011 3.989 18 O -0.373 6.373 19 C -0.057 4.057 20 C -0.074 4.074 21 C -0.174 4.174 22 C 0.070 3.930 23 F -0.125 7.125 24 C -0.176 4.176 25 C -0.097 4.097 26 H 0.109 0.891 27 H 0.033 0.967 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.227 0.773 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.064 -3.975 -15.228 15.873 hybrid contribution -0.024 -1.109 0.776 1.354 sum 2.040 -5.084 -14.453 15.456 Atomic orbital electron populations 1.22074 0.98377 0.99086 1.00964 1.18786 0.91054 0.94063 0.79913 0.93262 1.21244 1.32506 1.13271 0.90287 0.91994 1.24889 0.94771 0.94930 0.99092 1.69909 1.35812 1.22445 1.23843 0.86392 0.78619 0.79538 0.82548 1.19720 1.20848 1.20859 1.46578 1.64836 1.13515 1.10478 1.19951 0.79080 0.87573 0.84276 1.90702 1.50381 1.15672 1.84876 1.20400 1.02250 0.94295 0.92595 0.87309 1.22075 0.95332 0.92013 0.89474 1.86481 1.52017 1.46604 1.52176 1.19253 0.93524 0.97247 0.95634 1.20761 0.98584 0.94132 0.93955 1.21044 0.96923 1.01161 0.98224 1.17687 0.95069 0.92341 0.87878 1.91467 1.97302 1.67517 1.56180 1.21000 0.97413 0.99544 0.99652 1.20826 0.97535 0.96662 0.94636 0.89100 0.96662 0.95472 0.92581 0.77883 0.92328 0.92842 0.77326 0.85372 0.85009 0.85028 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.45 2.56 -69.08 -0.18 6.27 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -13.74 8.73 -34.44 -0.30 -14.05 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.39 11.32 55.43 0.63 -23.77 16 8 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.71 -13.78 4.93 -54.93 -0.27 -14.05 16 13 C 0.51 9.50 6.99 -10.99 -0.08 9.42 16 14 O -0.54 -12.22 14.79 5.56 0.08 -12.14 16 15 C -0.07 -1.05 2.61 -92.92 -0.24 -1.29 16 16 H 0.11 1.41 7.87 -51.93 -0.41 1.00 16 17 C 0.09 1.03 6.26 37.15 0.23 1.26 16 18 O -0.57 -5.96 13.41 -35.23 -0.47 -6.43 16 19 C -0.06 -0.82 4.16 -104.62 -0.44 -1.26 16 20 C -0.06 -0.82 7.88 -39.59 -0.31 -1.14 16 21 C -0.15 -2.12 10.03 -39.51 -0.40 -2.52 16 22 C 0.09 1.23 7.30 -39.42 -0.29 0.95 16 23 F -0.15 -2.01 17.27 2.25 0.04 -1.97 16 24 C -0.16 -2.02 10.03 -39.51 -0.40 -2.41 16 25 C -0.08 -1.04 9.67 -39.60 -0.38 -1.43 16 26 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 30 H 0.39 6.48 7.90 -40.82 -0.32 6.16 16 31 H 0.06 0.61 7.43 -51.93 -0.39 0.23 16 32 H 0.05 0.61 7.21 -51.93 -0.37 0.23 16 33 H 0.38 2.24 9.12 45.56 0.42 2.65 16 34 H 0.13 1.84 7.48 -52.49 -0.39 1.45 16 35 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.13 1.44 7.94 -52.48 -0.42 1.03 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -31.23 320.41 -6.54 -37.77 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -3.83 Total: 8.25 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.53 Total: -7.67 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.36 Total: -37.82 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.39 Total: -18.57 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.23 -6.54 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339271138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.358 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds