Wall clock time and date at job start Tue Mar 31 2020 06:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46812 * 2 1 4 4 C 1.50703 * 109.47304 * 120.00308 * 2 1 3 5 5 H 1.07994 * 119.99399 * 120.00023 * 4 2 1 6 6 C 1.37874 * 119.99789 * 299.99650 * 4 2 1 7 7 N 1.31518 * 120.00144 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99733 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47181 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46716 * 120.00463 * 8 6 4 11 11 H 1.48500 * 109.46999 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.46831 * 240.00445 * 2 1 3 13 13 C 1.34774 * 120.00251 * 84.99772 * 12 2 1 14 14 O 1.21282 * 119.99905 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99967 * 180.02562 * 13 12 2 16 16 H 1.09007 * 109.47090 * 299.99748 * 15 13 12 17 17 C 1.52995 * 109.47467 * 60.00097 * 15 13 12 18 18 O 1.42903 * 109.47420 * 185.00298 * 17 15 13 19 19 C 1.50707 * 109.47107 * 180.02562 * 15 13 12 20 20 C 1.38241 * 119.97127 * 299.72837 * 19 15 13 21 21 C 1.38199 * 120.02509 * 179.72846 * 20 19 15 22 22 C 1.38458 * 119.97087 * 0.51977 * 21 20 19 23 23 F 1.35103 * 120.02642 * 179.72808 * 22 21 20 24 24 C 1.38463 * 119.94959 * 359.74787 * 22 21 20 25 25 C 1.38196 * 119.97383 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.46935 * 299.99658 * 1 2 3 27 27 H 1.08992 * 109.47061 * 59.99633 * 1 2 3 28 28 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 29 29 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 30 30 H 0.97006 * 119.99584 * 264.99701 * 12 2 1 31 31 H 1.09003 * 109.47048 * 304.99941 * 17 15 13 32 32 H 1.08994 * 109.47223 * 64.99792 * 17 15 13 33 33 H 0.96698 * 113.99724 * 180.02562 * 18 17 15 34 34 H 1.08002 * 119.99106 * 359.97278 * 20 19 15 35 35 H 1.07993 * 120.01739 * 180.29135 * 21 20 19 36 36 H 1.08001 * 120.01069 * 179.97438 * 24 22 21 37 37 H 1.08003 * 119.98584 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3216 -1.1205 4.0078 9 1 3.1466 -2.2871 3.6036 10 1 3.1468 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0183 -0.6906 -1.1963 13 6 2.1470 -0.0182 -2.3572 14 8 1.8590 1.1587 -2.4115 15 6 2.6487 -0.7287 -3.5878 16 1 3.6479 -1.1213 -3.3988 17 6 1.7042 -1.8822 -3.9316 18 8 2.2405 -2.6269 -5.0269 19 6 2.7000 0.2399 -4.7413 20 6 1.5441 0.8653 -5.1699 21 6 1.5909 1.7579 -6.2239 22 6 2.7943 2.0176 -6.8575 23 9 2.8403 2.8859 -7.8916 24 6 3.9504 1.3864 -6.4309 25 6 3.9020 0.4977 -5.3737 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7084 1.1607 3.4844 30 1 2.2490 -1.6318 -1.1527 31 1 1.5982 -2.5354 -3.0654 32 1 0.7282 -1.4828 -4.2070 33 1 1.6922 -3.3752 -5.2997 34 1 0.6047 0.6592 -4.6784 35 1 0.6886 2.2500 -6.5556 36 1 4.8896 1.5879 -6.9247 37 1 4.8036 0.0049 -5.0410 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339271138.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:39 Heat of formation + Delta-G solvation = -137.095407 kcal Electronic energy + Delta-G solvation = -21758.825791 eV Core-core repulsion = 18221.346190 eV Total energy + Delta-G solvation = -3537.479601 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = -0.51 seconds Orbital eigenvalues (eV) -49.88656 -41.32752 -39.56594 -37.70679 -36.70732 -34.41921 -33.80947 -32.08695 -31.00392 -29.11790 -27.32130 -25.16417 -24.03274 -23.61954 -22.10747 -20.90220 -19.17299 -18.69601 -18.16778 -17.67884 -17.19754 -17.02167 -16.66342 -16.56407 -16.07223 -15.68177 -15.48941 -14.82094 -14.76397 -14.44991 -14.43763 -14.23446 -13.84768 -13.67873 -13.16064 -12.96207 -12.89812 -12.80380 -12.57974 -12.26576 -12.21149 -12.10580 -11.84137 -11.08866 -10.92036 -10.78931 -10.58355 -10.00313 -9.75348 -9.51826 -8.16793 -6.34011 0.15777 0.32664 1.45100 1.46888 1.58214 1.72124 2.29557 2.47916 2.77016 3.14028 3.25329 3.33115 3.60632 3.78663 3.96730 4.05182 4.16074 4.27971 4.35928 4.45889 4.57290 4.77041 4.78285 4.93826 4.98075 5.03454 5.11531 5.15943 5.27071 5.45386 5.56640 5.61359 5.70067 5.90888 5.94638 6.11543 6.74229 6.90351 6.94611 7.33183 7.52975 8.89459 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.026982 B = 0.003875 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.489746 B = 7224.897615 C = 7622.403472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.075 0.925 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.970 3.030 9 H -0.258 1.258 10 H -0.286 1.286 11 H -0.279 1.279 12 N -0.700 5.700 13 C 0.509 3.491 14 O -0.583 6.583 15 C -0.063 4.063 16 H 0.128 0.872 17 C 0.096 3.904 18 O -0.575 6.575 19 C -0.073 4.073 20 C -0.072 4.072 21 C -0.162 4.162 22 C 0.077 3.923 23 F -0.148 7.148 24 C -0.155 4.155 25 C -0.083 4.083 26 H 0.064 0.936 27 H 0.014 0.986 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.406 0.594 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.401 0.599 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.157 0.843 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 -7.513 -15.978 17.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.166 3.834 3 H 0.016 0.984 4 C -0.583 4.583 5 H 0.093 0.907 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.182 1.182 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.350 5.350 13 C 0.295 3.705 14 O -0.463 6.463 15 C -0.084 4.084 16 H 0.145 0.855 17 C 0.018 3.982 18 O -0.384 6.384 19 C -0.073 4.073 20 C -0.090 4.090 21 C -0.180 4.180 22 C 0.058 3.942 23 F -0.126 7.126 24 C -0.173 4.173 25 C -0.101 4.101 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.252 0.748 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.175 0.825 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.222 -6.104 -15.847 17.285 hybrid contribution -0.380 -0.424 0.878 1.047 sum 2.843 -6.528 -14.969 16.576 Atomic orbital electron populations 1.21882 0.98098 0.99590 0.99587 1.18362 0.91233 0.91913 0.81845 0.98385 1.21586 1.32443 1.13530 0.90747 0.90706 1.25776 0.94899 0.95554 1.02303 1.70061 1.37064 1.23997 1.24486 0.85320 0.78068 0.78559 0.78528 1.18221 1.21223 1.20524 1.46283 1.64945 1.14193 1.09530 1.20677 0.77693 0.87098 0.85051 1.90683 1.52064 1.17902 1.85657 1.20284 1.03484 0.94743 0.89895 0.85462 1.21916 0.94295 0.91476 0.90502 1.86417 1.52738 1.47539 1.51662 1.19449 0.94106 0.97725 0.96040 1.20825 0.98697 0.94946 0.94527 1.21227 0.97748 1.01029 0.98041 1.17879 0.95574 0.92703 0.88090 1.91461 1.97329 1.67608 1.56230 1.21310 0.98089 0.98635 0.99284 1.21130 0.97846 0.96631 0.94502 0.91750 0.96716 0.93828 0.92631 0.75893 0.90934 0.92996 0.74819 0.85966 0.83722 0.82513 0.82892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.43 9.26 71.98 0.67 -5.77 16 2 C 0.27 13.42 2.56 44.25 0.11 13.53 16 3 H 0.00 -0.11 7.58 -2.39 -0.02 -0.12 16 4 C -0.54 -27.79 8.73 25.60 0.22 -27.57 16 5 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -51.70 11.32 21.45 0.24 -51.45 16 8 Si 0.97 40.96 29.54 68.60 2.03 42.98 16 9 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 12 N -0.70 -26.90 4.93 -446.08 -2.20 -29.10 16 13 C 0.51 18.87 6.99 87.66 0.61 19.48 16 14 O -0.58 -27.07 14.79 -3.04 -0.04 -27.11 16 15 C -0.06 -1.68 2.61 -12.29 -0.03 -1.71 16 16 H 0.13 2.94 7.87 -2.38 -0.02 2.92 16 17 C 0.10 2.00 6.26 71.98 0.45 2.46 16 18 O -0.57 -10.37 13.41 -148.98 -2.00 -12.37 16 19 C -0.07 -2.04 4.16 -19.86 -0.08 -2.12 16 20 C -0.07 -2.09 7.88 22.26 0.18 -1.91 16 21 C -0.16 -4.38 10.03 22.31 0.22 -4.15 16 22 C 0.08 2.03 7.30 22.38 0.16 2.20 16 23 F -0.15 -3.91 17.27 44.97 0.78 -3.13 16 24 C -0.15 -3.66 10.03 22.31 0.22 -3.44 16 25 C -0.08 -2.04 9.67 22.26 0.22 -1.82 16 26 H 0.06 3.47 6.07 -2.39 -0.01 3.46 16 27 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.34 16 30 H 0.41 12.77 7.90 -92.70 -0.73 12.04 16 31 H 0.07 1.31 7.43 -2.39 -0.02 1.29 16 32 H 0.05 1.10 7.21 -2.39 -0.02 1.08 16 33 H 0.40 3.46 9.12 -74.06 -0.68 2.79 16 34 H 0.12 3.59 7.48 -2.91 -0.02 3.57 16 35 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 36 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.15 2.94 7.94 -2.91 -0.02 2.92 16 Total: -1.00 -68.10 320.41 1.91 -66.19 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -0.30 Total: 23.60 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 3.40 Total: -9.61 kcal Atomic # 7 Polarization: -78.60 SS G_CDS: -1.96 Total: -80.55 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -2.04 Total: -39.48 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.78 Total: -3.13 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.98 kcal Total: -68.10 1.91 -66.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339271138.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.903 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.51 seconds