Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21281 * 119.99723 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00182 * 180.02562 * 13 12 2 16 16 H 1.09000 * 109.47439 * 59.99224 * 15 13 12 17 17 C 1.53002 * 109.46859 * 299.99626 * 15 13 12 18 18 O 1.42906 * 109.47034 * 65.00003 * 17 15 13 19 19 C 1.50699 * 109.47318 * 179.97438 * 15 13 12 20 20 C 1.38244 * 119.97379 * 59.72334 * 19 15 13 21 21 C 1.38199 * 120.02702 * 179.76863 * 20 19 15 22 22 C 1.38458 * 119.97138 * 0.50633 * 21 20 19 23 23 F 1.35101 * 120.02921 * 179.76788 * 22 21 20 24 24 C 1.38462 * 119.94850 * 359.74454 * 22 21 20 25 25 C 1.38192 * 119.97530 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 30 30 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 31 31 H 1.09003 * 109.47199 * 184.99911 * 17 15 13 32 32 H 1.08998 * 109.47422 * 305.00447 * 17 15 13 33 33 H 0.96702 * 114.00115 * 179.97438 * 18 17 15 34 34 H 1.08006 * 119.98789 * 0.02562 * 20 19 15 35 35 H 1.07996 * 120.01518 * 180.25107 * 21 20 19 36 36 H 1.08001 * 120.01553 * 179.97438 * 24 22 21 37 37 H 1.08003 * 119.99144 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8591 1.1586 -2.4115 15 6 2.6490 -0.7288 -3.5877 16 1 1.9762 -1.5507 -3.8325 17 6 4.0515 -1.2797 -3.3221 18 8 3.9847 -2.2832 -2.3069 19 6 2.6992 0.2394 -4.7414 20 6 3.4875 1.3720 -4.6587 21 6 3.5381 2.2582 -5.7180 22 6 2.7908 2.0166 -6.8582 23 9 2.8357 2.8845 -7.8926 24 6 1.9976 0.8845 -6.9378 25 6 1.9522 -0.0026 -5.8792 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.9026 -0.5283 4.4376 30 1 2.2490 -1.6317 -1.1525 31 1 4.4501 -1.7156 -4.2382 32 1 4.7029 -0.4709 -2.9911 33 1 4.8398 -2.6777 -2.0870 34 1 4.0673 1.5623 -3.7676 35 1 4.1572 3.1408 -5.6548 36 1 1.4138 0.6952 -7.8265 37 1 1.3339 -0.8860 -5.9412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339271140.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -131.603482 kcal Electronic energy + Delta-G solvation = -21928.980815 eV Core-core repulsion = 18391.739361 eV Total energy + Delta-G solvation = -3537.241453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.89853 -41.32932 -39.59132 -37.70299 -36.78916 -34.33496 -33.99087 -32.10414 -31.63573 -29.14652 -27.20923 -25.23203 -24.06376 -23.60757 -22.02492 -20.96227 -19.09027 -18.75792 -18.37563 -17.92622 -17.30294 -17.06644 -16.57988 -16.43058 -16.21273 -15.82036 -15.14183 -15.04436 -14.95820 -14.60493 -14.46046 -14.34558 -14.12393 -13.84991 -13.48403 -13.17159 -13.12771 -12.80457 -12.61229 -12.30961 -12.12382 -11.85832 -11.61562 -11.25871 -11.10760 -10.85446 -10.52176 -10.02523 -9.76647 -9.58127 -8.36378 -6.41283 0.10078 0.30629 1.27071 1.35063 1.44616 1.77766 2.26858 2.38697 2.71012 2.99696 3.19877 3.30895 3.66207 3.83890 3.96279 4.02281 4.18554 4.26297 4.36073 4.43347 4.46145 4.55874 4.66891 4.73754 4.79834 4.97022 4.98144 5.03308 5.15440 5.25388 5.35499 5.45542 5.54006 5.73497 5.91375 6.18357 6.61177 6.89811 6.99821 7.21907 7.54905 8.79018 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.004358 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.401196 B = 6423.957361 C = 7034.186447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.020 0.980 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.030 3.970 7 N -0.934 5.934 8 Si 0.938 3.062 9 H -0.260 1.260 10 H -0.292 1.292 11 H -0.265 1.265 12 N -0.689 5.689 13 C 0.505 3.495 14 O -0.590 6.590 15 C -0.061 4.061 16 H 0.132 0.868 17 C 0.094 3.906 18 O -0.585 6.585 19 C -0.082 4.082 20 C -0.068 4.068 21 C -0.162 4.162 22 C 0.082 3.918 23 F -0.147 7.147 24 C -0.153 4.153 25 C -0.076 4.076 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.040 0.960 29 H 0.270 0.730 30 H 0.411 0.589 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.404 0.596 34 H 0.120 0.880 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -1.253 -21.008 21.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.037 0.963 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.170 4.170 7 N -0.573 5.573 8 Si 0.766 3.234 9 H -0.186 1.186 10 H -0.219 1.219 11 H -0.190 1.190 12 N -0.339 5.339 13 C 0.291 3.709 14 O -0.472 6.472 15 C -0.082 4.082 16 H 0.149 0.851 17 C 0.016 3.984 18 O -0.395 6.395 19 C -0.083 4.083 20 C -0.086 4.086 21 C -0.181 4.181 22 C 0.063 3.937 23 F -0.126 7.126 24 C -0.172 4.172 25 C -0.094 4.094 26 H 0.083 0.917 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.249 0.751 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.255 0.745 34 H 0.138 0.862 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.004 -0.280 -20.881 20.979 hybrid contribution 0.350 0.485 0.708 0.927 sum 2.354 0.205 -20.173 20.311 Atomic orbital electron populations 1.22344 0.98032 1.01571 0.99334 1.18754 0.91067 0.93076 0.83645 0.96266 1.21256 1.32107 1.13443 0.89848 0.92531 1.25528 0.96848 0.99238 0.95364 1.69976 1.46813 1.41911 0.98593 0.86023 0.79861 0.80485 0.77076 1.18608 1.21924 1.18980 1.46106 1.64269 1.14860 1.08662 1.20978 0.77571 0.86958 0.85360 1.90650 1.52964 1.17756 1.85827 1.20293 1.00016 0.97800 0.90097 0.85054 1.22028 0.93187 0.90900 0.92306 1.86326 1.38199 1.56062 1.58911 1.19318 0.98676 0.95817 0.94495 1.20863 0.97604 0.93029 0.97084 1.21231 1.02043 1.01877 0.92935 1.17938 1.00269 0.90066 0.85422 1.91472 1.95437 1.68708 1.57001 1.21344 1.00604 0.93621 1.01601 1.21180 0.97206 0.99938 0.91063 0.91729 0.93641 0.94176 0.92108 0.75072 0.89186 0.93794 0.74505 0.86179 0.83866 0.82241 0.82024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.89 8.96 71.98 0.65 -6.24 16 2 C 0.24 11.62 2.15 44.25 0.10 11.72 16 3 H 0.02 1.05 6.64 -2.39 -0.02 1.03 16 4 C -0.53 -29.21 9.31 25.60 0.24 -28.97 16 5 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 6 C 0.03 1.69 5.45 84.65 0.46 2.15 16 7 N -0.93 -56.21 13.96 21.45 0.30 -55.91 16 8 Si 0.94 45.29 24.37 68.60 1.67 46.96 16 9 H -0.26 -11.82 6.87 99.48 0.68 -11.14 16 10 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 11 H -0.26 -12.80 6.53 99.48 0.65 -12.15 16 12 N -0.69 -27.70 4.81 -446.09 -2.14 -29.84 16 13 C 0.50 18.46 6.98 87.65 0.61 19.08 16 14 O -0.59 -25.92 14.75 -3.03 -0.04 -25.97 16 15 C -0.06 -1.51 2.67 -12.29 -0.03 -1.54 16 16 H 0.13 2.67 7.87 -2.39 -0.02 2.65 16 17 C 0.09 1.90 6.16 71.98 0.44 2.34 16 18 O -0.59 -12.83 11.43 -148.98 -1.70 -14.53 16 19 C -0.08 -1.95 4.40 -19.86 -0.09 -2.04 16 20 C -0.07 -1.73 7.97 22.26 0.18 -1.55 16 21 C -0.16 -3.82 10.03 22.31 0.22 -3.59 16 22 C 0.08 1.86 7.30 22.38 0.16 2.02 16 23 F -0.15 -3.44 17.27 44.97 0.78 -2.66 16 24 C -0.15 -2.88 10.03 22.31 0.22 -2.66 16 25 C -0.08 -1.44 9.67 22.26 0.22 -1.22 16 26 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.04 1.82 3.27 -2.38 -0.01 1.81 16 29 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.41 15.41 6.60 -92.71 -0.61 14.80 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 0.96 7.59 -2.39 -0.02 0.95 16 33 H 0.40 5.47 9.12 -74.06 -0.68 4.79 16 34 H 0.12 3.27 7.58 -2.91 -0.02 3.25 16 35 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 36 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 37 H 0.16 2.06 7.94 -2.91 -0.02 2.04 16 Total: -1.00 -71.01 311.60 1.98 -69.02 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.25 Total: 23.44 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 3.38 Total: -10.51 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -1.84 Total: -85.75 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.75 Total: -40.50 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.67 Total: 46.96 kcal Total: -71.01 1.98 -69.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339271140.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.581 kcal (2) G-P(sol) polarization free energy of solvation -71.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds