Wall clock time and date at job start Tue Mar 31 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47004 * 2 1 4 4 N 1.46493 * 109.47185 * 180.02562 * 3 2 1 5 5 C 1.36877 * 120.00098 * 90.00549 * 4 3 2 6 6 H 1.08003 * 119.99690 * 224.21619 * 5 4 3 7 7 C 1.39007 * 120.00268 * 44.48805 * 5 4 3 8 8 N 1.31398 * 120.00046 * 14.31356 * 7 5 4 9 9 Si 1.86805 * 120.00144 * 194.31393 * 7 5 4 10 10 H 1.48500 * 109.46992 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47058 * 120.00004 * 9 7 5 12 12 H 1.48493 * 109.46971 * 240.00273 * 9 7 5 13 13 C 1.34781 * 119.99655 * 270.00001 * 4 3 2 14 14 O 1.21743 * 120.00175 * 5.65810 * 13 4 3 15 15 C 1.46457 * 119.99527 * 185.65379 * 13 4 3 16 16 C 1.36775 * 125.46055 * 186.44986 * 15 13 4 17 17 C 1.37451 * 113.27664 * 179.97438 * 16 15 13 18 18 C 1.50692 * 122.44241 * 180.02562 * 17 16 15 19 19 C 1.53007 * 109.47003 * 264.97158 * 18 17 16 20 20 C 1.33841 * 115.10591 * 359.97438 * 17 16 15 21 21 C 1.50707 * 124.51018 * 179.97438 * 20 17 16 22 22 S 1.70608 * 110.97480 * 359.76679 * 20 17 16 23 23 H 1.09008 * 109.46603 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47121 * 299.99222 * 1 2 3 25 25 H 1.08994 * 109.47022 * 60.00230 * 1 2 3 26 26 H 1.09000 * 109.47121 * 240.00777 * 2 1 3 27 27 H 1.08992 * 109.47276 * 120.00501 * 2 1 3 28 28 H 1.09005 * 109.46820 * 59.99751 * 3 2 1 29 29 H 1.08998 * 109.47238 * 300.00672 * 3 2 1 30 30 H 0.96992 * 120.00057 * 184.98922 * 8 7 5 31 31 H 1.07999 * 123.35819 * 359.96095 * 16 15 13 32 32 H 1.08998 * 109.47474 * 24.96821 * 18 17 16 33 33 H 1.09005 * 109.47487 * 144.97050 * 18 17 16 34 34 H 1.08998 * 109.46730 * 300.00118 * 19 18 17 35 35 H 1.08999 * 109.47370 * 59.99967 * 19 18 17 36 36 H 1.09000 * 109.47151 * 180.02562 * 19 18 17 37 37 H 1.09003 * 109.47088 * 90.00345 * 21 20 17 38 38 H 1.08999 * 109.47262 * 209.99943 * 21 20 17 39 39 H 1.08995 * 109.47346 * 330.00313 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1889 1.4429 -1.1863 6 1 5.0394 0.7906 -1.3192 7 6 3.7922 2.2867 -2.2173 8 7 2.9577 3.2724 -1.9753 9 14 4.4456 2.0194 -3.9468 10 1 5.3623 0.8511 -3.9545 11 1 3.3112 1.7640 -4.8705 12 1 5.1822 3.2301 -4.3902 13 6 4.1793 1.4424 1.1664 14 8 3.5754 1.3383 2.2184 15 6 5.6385 1.5674 1.1688 16 6 6.4426 1.4559 2.2696 17 6 7.7778 1.6167 1.9855 18 6 8.8455 1.5339 3.0456 19 6 9.1747 2.9408 3.5489 20 6 8.0603 1.8511 0.6984 21 6 9.4498 2.0597 0.1535 22 16 6.6384 1.8767 -0.2441 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 2.6245 3.8161 -2.7061 31 1 6.0660 1.2612 3.2629 32 1 8.4868 0.9257 3.8759 33 1 9.7422 1.0799 2.6235 34 1 9.5334 3.5490 2.7186 35 1 8.2781 3.3947 3.9710 36 1 9.9474 2.8809 4.3154 37 1 9.8718 1.0994 -0.1429 38 1 9.4051 2.7198 -0.7128 39 1 10.0775 2.5108 0.9219 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346492371.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:20 Heat of formation + Delta-G solvation = -30.671124 kcal Electronic energy + Delta-G solvation = -20244.861285 eV Core-core repulsion = 17278.209763 eV Total energy + Delta-G solvation = -2966.651522 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.76617 -37.78285 -35.13504 -33.04367 -32.24297 -31.42166 -30.89806 -27.01116 -25.76682 -24.58914 -23.35713 -22.15777 -20.57715 -19.37851 -18.13573 -17.16816 -16.46949 -15.45658 -14.71466 -14.65862 -14.22224 -13.95146 -13.78653 -13.57669 -13.47341 -12.86926 -12.61066 -12.49939 -12.22340 -11.99863 -11.70362 -11.59884 -11.46873 -11.34863 -11.08464 -11.03211 -10.82749 -10.77217 -10.64629 -10.42651 -10.39363 -9.80349 -9.72576 -9.10154 -8.64693 -7.81124 -7.53173 -7.43023 -6.57002 -4.40393 1.50168 2.57468 2.93819 3.09746 3.10735 3.14425 3.18590 3.91868 4.33509 4.68219 4.87461 5.31550 5.32545 5.50992 5.64635 5.67928 5.76379 5.80224 5.84516 5.93907 6.02922 6.08043 6.10548 6.21807 6.25884 6.36349 6.45694 6.50594 6.51789 6.62492 6.78031 6.81521 7.03428 7.11005 7.18749 7.26963 7.34201 7.79305 8.15577 8.82518 9.35099 9.79182 10.38436 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.016925 B = 0.006892 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.952599 B = 4061.581228 C = 5361.829525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.121 3.879 4 N -0.435 5.435 5 C -0.340 4.340 6 H 0.099 0.901 7 C 0.061 3.939 8 N -0.838 5.838 9 Si 0.903 3.097 10 H -0.259 1.259 11 H -0.274 1.274 12 H -0.273 1.273 13 C 0.539 3.461 14 O -0.596 6.596 15 C -0.219 4.219 16 C -0.095 4.095 17 C -0.125 4.125 18 C -0.060 4.060 19 C -0.144 4.144 20 C -0.288 4.288 21 C -0.073 4.073 22 S 0.283 5.717 23 H 0.045 0.955 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.275 0.725 31 H 0.134 0.866 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.082 -2.035 0.488 7.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.002 4.002 4 N -0.152 5.152 5 C -0.474 4.474 6 H 0.116 0.884 7 C -0.150 4.150 8 N -0.471 5.471 9 Si 0.728 3.272 10 H -0.182 1.182 11 H -0.199 1.199 12 H -0.199 1.199 13 C 0.329 3.671 14 O -0.483 6.483 15 C -0.341 4.341 16 C -0.128 4.128 17 C -0.137 4.137 18 C -0.099 4.099 19 C -0.202 4.202 20 C -0.407 4.407 21 C -0.132 4.132 22 S 0.559 5.441 23 H 0.064 0.936 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.086 0.914 31 H 0.152 0.848 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.487 -1.629 -0.652 6.720 hybrid contribution 0.517 -0.235 0.677 0.884 sum 7.004 -1.863 0.026 7.248 Atomic orbital electron populations 1.21660 0.96534 1.00516 1.01374 1.21838 0.94698 0.99259 1.01537 1.21378 0.81022 0.94722 1.03088 1.43250 1.04931 1.62988 1.04029 1.19445 1.14498 1.21996 0.91454 0.88382 1.25541 0.96342 0.92520 1.00607 1.69911 1.29714 1.14327 1.33198 0.86206 0.79649 0.79391 0.81970 1.18239 1.19894 1.19868 1.17392 0.84944 0.80512 0.84289 1.90651 1.69190 1.56674 1.31795 1.24588 0.98051 1.13956 0.97458 1.20308 0.91469 1.02356 0.98696 1.18331 0.94245 1.07198 0.93970 1.20142 0.96404 0.97098 0.96271 1.21731 1.01054 0.96967 1.00432 1.25249 1.04625 1.10139 1.00666 1.20184 0.91404 1.01289 1.00277 1.84402 0.89734 1.63062 1.06880 0.93571 0.93120 0.93005 0.92160 0.92768 0.92624 0.88345 0.91418 0.84814 0.91821 0.91933 0.92840 0.92618 0.93185 0.91812 0.92103 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 37.16 0.37 -1.99 16 2 C -0.13 -2.73 6.26 -26.73 -0.17 -2.89 16 3 C 0.12 2.85 4.95 -4.05 -0.02 2.83 16 4 N -0.43 -10.95 2.46 -116.37 -0.29 -11.23 16 5 C -0.34 -8.24 6.66 -15.01 -0.10 -8.34 16 6 H 0.10 2.32 5.77 -37.97 -0.22 2.10 16 7 C 0.06 1.44 5.07 -17.45 -0.09 1.35 16 8 N -0.84 -20.88 11.53 55.50 0.64 -20.24 16 9 Si 0.90 18.12 29.58 -169.99 -5.03 13.09 16 10 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 11 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 C 0.54 13.97 7.58 -12.95 -0.10 13.87 16 14 O -0.60 -16.57 16.49 5.15 0.08 -16.49 16 15 C -0.22 -5.06 6.28 -36.80 -0.23 -5.29 16 16 C -0.10 -1.97 9.79 -40.40 -0.40 -2.37 16 17 C -0.12 -2.23 5.04 -106.46 -0.54 -2.77 16 18 C -0.06 -0.85 5.54 -27.88 -0.15 -1.00 16 19 C -0.14 -1.85 9.83 37.16 0.37 -1.48 16 20 C -0.29 -5.08 6.28 -35.85 -0.22 -5.30 16 21 C -0.07 -1.01 9.71 36.01 0.35 -0.66 16 22 S 0.28 5.75 18.48 -107.50 -1.99 3.76 16 23 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.36 7.51 -51.93 -0.39 0.97 16 29 H 0.10 2.38 5.77 -51.93 -0.30 2.08 16 30 H 0.28 6.38 8.31 -40.82 -0.34 6.04 16 31 H 0.13 2.72 8.06 -52.49 -0.42 2.30 16 32 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 34 H 0.05 0.68 7.24 -51.93 -0.38 0.31 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.79 6.39 -51.93 -0.33 0.45 16 LS Contribution 330.65 15.07 4.98 4.98 Total: -1.00 -27.74 330.65 -8.32 -36.06 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.79 Total: 4.12 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.93 Total: -14.05 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.35 Total: -31.48 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.08 Total: -16.49 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.99 Total: 3.76 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.74 -8.32 -36.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346492371.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.385 kcal (2) G-P(sol) polarization free energy of solvation -27.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds