Wall clock time and date at job start Tue Mar 31 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47236 * 2 1 4 4 N 1.46502 * 109.46952 * 179.97438 * 3 2 1 5 5 C 1.37093 * 120.00140 * 269.99658 * 4 3 2 6 6 H 1.07996 * 120.00138 * 138.63503 * 5 4 3 7 7 C 1.38955 * 119.99948 * 318.63750 * 5 4 3 8 8 N 1.31411 * 119.99890 * 352.30675 * 7 5 4 9 9 Si 1.86802 * 119.99986 * 172.30647 * 7 5 4 10 10 H 1.48502 * 109.47261 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47230 * 119.99854 * 9 7 5 12 12 H 1.48497 * 109.47360 * 240.00071 * 9 7 5 13 13 C 1.34770 * 119.99985 * 90.00350 * 4 3 2 14 14 O 1.21294 * 120.00330 * 355.62867 * 13 4 3 15 15 C 1.50699 * 120.00084 * 175.91247 * 13 4 3 16 16 O 1.42902 * 109.47201 * 184.81018 * 15 13 4 17 17 C 1.35901 * 116.99942 * 184.06267 * 16 15 13 18 18 C 1.38773 * 120.04146 * 4.71223 * 17 16 15 19 19 C 1.38132 * 119.99138 * 179.74473 * 18 17 16 20 20 C 1.38249 * 120.08244 * 0.53092 * 19 18 17 21 21 C 1.38477 * 120.08623 * 359.73958 * 20 19 18 22 22 F 1.35092 * 120.00093 * 180.02562 * 21 20 19 23 23 C 1.38393 * 120.00058 * 359.97438 * 21 20 19 24 24 H 1.09004 * 109.46735 * 60.00261 * 1 2 3 25 25 H 1.08997 * 109.47770 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47372 * 300.00711 * 1 2 3 27 27 H 1.08994 * 109.47342 * 239.99727 * 2 1 3 28 28 H 1.09004 * 109.46735 * 119.99739 * 2 1 3 29 29 H 1.08994 * 109.47178 * 59.99627 * 3 2 1 30 30 H 1.09004 * 109.47045 * 299.99549 * 3 2 1 31 31 H 0.97004 * 119.99931 * 185.00787 * 8 7 5 32 32 H 1.09003 * 109.47123 * 304.80650 * 15 13 4 33 33 H 1.09003 * 109.47524 * 64.80892 * 15 13 4 34 34 H 1.07999 * 120.00195 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.96118 * 180.27270 * 19 18 17 36 36 H 1.07999 * 119.96434 * 179.76849 * 20 19 18 37 37 H 1.08004 * 120.03452 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1900 1.4426 1.1882 6 1 5.0678 0.8245 1.3053 7 6 3.7548 2.2381 2.2411 8 7 2.7816 3.1011 2.0540 9 14 4.5532 2.0807 3.9226 10 1 5.6161 1.0449 3.8709 11 1 5.1497 3.3838 4.3113 12 1 3.5280 1.6876 4.9225 13 6 4.1793 1.4423 -1.1662 14 8 3.5760 1.3621 -2.2154 15 6 5.6835 1.5352 -1.1673 16 8 6.1540 1.6293 -2.5134 17 6 7.5005 1.6353 -2.6973 18 6 8.3503 1.4542 -1.6152 19 6 9.7186 1.4552 -1.8041 20 6 10.2434 1.6475 -3.0686 21 6 9.3986 1.8341 -4.1498 22 9 9.9133 2.0214 -5.3848 23 6 8.0270 1.8279 -3.9655 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.6766 1.9563 0.8899 30 1 1.6767 1.9563 -0.8901 31 1 2.5266 3.7068 2.7675 32 1 5.9932 2.4203 -0.6115 33 1 6.1029 0.6457 -0.6972 34 1 7.9417 1.3087 -0.6261 35 1 10.3794 1.3098 -0.9624 36 1 11.3136 1.6516 -3.2136 37 1 7.3676 1.9730 -4.8085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346505880.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:47 Heat of formation + Delta-G solvation = -96.171913 kcal Electronic energy + Delta-G solvation = -21572.802741 eV Core-core repulsion = 18037.097716 eV Total energy + Delta-G solvation = -3535.705025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -48.91427 -39.99323 -38.56318 -36.89146 -35.09599 -32.88807 -31.46304 -30.91747 -29.77054 -27.93472 -25.73857 -24.35945 -22.87177 -22.13793 -20.72268 -19.32688 -18.39962 -17.42684 -16.33330 -16.18615 -16.03114 -15.82669 -15.44338 -15.41189 -14.63760 -14.51425 -13.96320 -13.78701 -13.63321 -13.58931 -12.79052 -12.58142 -12.36504 -12.03741 -11.76720 -11.54248 -11.47541 -11.35554 -11.03049 -10.97784 -10.77730 -10.64981 -10.38607 -10.30594 -9.79146 -9.23755 -8.86258 -8.57205 -8.17996 -7.59582 -6.46303 -4.32783 1.15633 1.34423 2.99417 3.09192 3.12827 3.17794 3.63516 3.72168 3.97475 4.33806 4.71878 4.82954 4.88446 5.00605 5.09887 5.36119 5.40306 5.66728 5.73480 5.79777 5.88687 5.94967 5.97943 6.09448 6.16471 6.28420 6.37222 6.49207 6.53936 6.67718 6.76368 6.81892 7.08650 7.19408 7.49488 7.58175 7.84366 8.24183 8.91251 9.32614 9.76369 10.51085 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.018338 B = 0.004487 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.520381 B = 6238.375689 C = 7458.598866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C 0.109 3.891 4 N -0.434 5.434 5 C -0.346 4.346 6 H 0.088 0.912 7 C 0.048 3.952 8 N -0.863 5.863 9 Si 0.920 3.080 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.474 3.526 14 O -0.584 6.584 15 C 0.059 3.941 16 O -0.288 6.288 17 C 0.172 3.828 18 C -0.222 4.222 19 C -0.050 4.050 20 C -0.203 4.203 21 C 0.135 3.865 22 F -0.139 7.139 23 C -0.195 4.195 24 H 0.049 0.951 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.051 0.949 31 H 0.273 0.727 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.132 0.868 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.984 -2.638 -1.998 9.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.153 5.153 5 C -0.474 4.474 6 H 0.106 0.894 7 C -0.158 4.158 8 N -0.500 5.500 9 Si 0.746 3.254 10 H -0.191 1.191 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.261 3.739 14 O -0.468 6.468 15 C -0.019 4.019 16 O -0.199 6.199 17 C 0.124 3.876 18 C -0.241 4.241 19 C -0.068 4.068 20 C -0.222 4.222 21 C 0.115 3.885 22 F -0.117 7.117 23 C -0.214 4.214 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.150 0.850 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.351 -2.552 -2.551 9.097 hybrid contribution 0.588 -0.002 1.005 1.164 sum 8.938 -2.554 -1.546 9.424 Atomic orbital electron populations 1.21650 0.96567 1.00411 1.01421 1.21822 0.94740 0.99491 1.01156 1.21692 0.80634 0.94779 1.04246 1.43321 1.05015 1.63266 1.03745 1.19517 1.12496 1.25914 0.89491 0.89449 1.25509 0.95899 0.94239 1.00195 1.69657 1.27266 1.18875 1.34156 0.85977 0.79238 0.78474 0.81720 1.19123 1.20418 1.20356 1.19844 0.87658 0.81681 0.84722 1.90581 1.69793 1.54843 1.31632 1.22531 0.95705 1.03242 0.80405 1.86168 1.17191 1.86602 1.29944 1.18779 0.83543 0.92229 0.93042 1.21493 0.94202 1.08947 0.99453 1.20762 0.94466 0.95296 0.96312 1.20954 1.00007 1.08995 0.92245 1.17258 0.91046 1.00331 0.79833 1.91488 1.87259 1.92589 1.40391 1.20263 0.93534 1.10313 0.97308 0.93170 0.93679 0.92909 0.93153 0.92334 0.86233 0.93013 0.91662 0.88918 0.90120 0.84244 0.84834 0.84979 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.72 6.26 -26.73 -0.17 -2.88 16 3 C 0.11 2.57 4.96 -4.04 -0.02 2.55 16 4 N -0.43 -10.56 2.52 -114.81 -0.29 -10.85 16 5 C -0.35 -8.17 8.49 -14.93 -0.13 -8.30 16 6 H 0.09 1.92 7.31 -52.49 -0.38 1.54 16 7 C 0.05 1.13 5.24 -17.47 -0.09 1.03 16 8 N -0.86 -21.49 10.93 55.50 0.61 -20.88 16 9 Si 0.92 18.09 29.56 -169.99 -5.03 13.07 16 10 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 11 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 12 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 13 C 0.47 11.48 7.70 -10.99 -0.08 11.40 16 14 O -0.58 -15.82 16.13 -14.31 -0.23 -16.05 16 15 C 0.06 1.16 4.01 36.01 0.14 1.31 16 16 O -0.29 -5.72 9.67 -39.29 -0.38 -6.10 16 17 C 0.17 2.82 6.68 -39.23 -0.26 2.56 16 18 C -0.22 -3.08 9.07 -39.42 -0.36 -3.44 16 19 C -0.05 -0.58 10.04 -39.62 -0.40 -0.98 16 20 C -0.20 -2.39 10.02 -39.49 -0.40 -2.78 16 21 C 0.13 1.83 7.30 -39.44 -0.29 1.55 16 22 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 23 C -0.19 -2.95 9.97 -39.37 -0.39 -3.35 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.12 2.96 5.25 -51.93 -0.27 2.68 16 30 H 0.05 1.27 7.49 -51.93 -0.39 0.88 16 31 H 0.27 6.39 8.32 -40.82 -0.34 6.05 16 32 H 0.09 1.75 7.95 -51.93 -0.41 1.34 16 33 H 0.08 1.41 6.90 -51.93 -0.36 1.05 16 34 H 0.14 1.81 6.28 -52.49 -0.33 1.48 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 321.41 15.07 4.84 4.84 Total: -1.00 -28.20 321.41 -7.17 -35.37 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.66 Total: 5.80 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.07 Total: -3.37 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.32 Total: -31.73 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.61 Total: -22.14 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.20 -7.17 -35.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346505880.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.800 kcal (2) G-P(sol) polarization free energy of solvation -28.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds