Wall clock time and date at job start Tue Mar 31 2020 05:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47422 * 2 1 4 4 N 1.46493 * 109.46790 * 184.83010 * 3 2 1 5 5 C 1.36880 * 120.00103 * 265.49193 * 4 3 2 6 6 H 1.08004 * 119.99596 * 146.04082 * 5 4 3 7 7 C 1.39002 * 120.00045 * 326.05023 * 5 4 3 8 8 N 1.31405 * 120.00014 * 158.73213 * 7 5 4 9 9 Si 1.86797 * 119.99957 * 338.72811 * 7 5 4 10 10 H 1.48501 * 109.47243 * 95.42503 * 9 7 5 11 11 H 1.48501 * 109.47062 * 215.42282 * 9 7 5 12 12 H 1.48492 * 109.47207 * 335.42358 * 9 7 5 13 13 C 1.34777 * 120.00238 * 85.50381 * 4 3 2 14 14 O 1.21748 * 120.00565 * 174.63330 * 13 4 3 15 15 C 1.46464 * 120.00063 * 354.63162 * 13 4 3 16 16 C 1.36766 * 125.46379 * 173.80921 * 15 13 4 17 17 C 1.37441 * 113.27512 * 179.86512 * 16 15 13 18 18 C 1.33849 * 115.11137 * 0.42440 * 17 16 15 19 19 C 1.50697 * 124.51574 * 179.76653 * 18 17 16 20 20 C 1.53002 * 109.47181 * 120.02786 * 19 18 17 21 21 C 1.53011 * 109.46902 * 240.02391 * 19 18 17 22 22 S 1.70615 * 110.96782 * 359.76748 * 18 17 16 23 23 H 1.09005 * 109.46938 * 64.42613 * 1 2 3 24 24 H 1.08994 * 109.47461 * 184.42720 * 1 2 3 25 25 H 1.08998 * 109.46731 * 304.43389 * 1 2 3 26 26 H 1.08999 * 109.46747 * 239.99837 * 2 1 3 27 27 H 1.09002 * 109.46801 * 120.00297 * 2 1 3 28 28 H 1.08998 * 109.47000 * 64.82448 * 3 2 1 29 29 H 1.09006 * 109.46938 * 304.82653 * 3 2 1 30 30 H 0.97000 * 120.00233 * 180.02562 * 8 7 5 31 31 H 1.07995 * 123.36166 * 0.02562 * 16 15 13 32 32 H 1.08000 * 122.44398 * 180.19110 * 17 16 15 33 33 H 1.08997 * 109.47441 * 0.02562 * 19 18 17 34 34 H 1.08998 * 109.47005 * 60.00253 * 20 19 18 35 35 H 1.09008 * 109.46788 * 179.97438 * 20 19 18 36 36 H 1.08993 * 109.46728 * 299.99537 * 20 19 18 37 37 H 1.08997 * 109.47093 * 300.00238 * 21 19 18 38 38 H 1.09002 * 109.46635 * 60.00426 * 21 19 18 39 39 H 1.08999 * 109.46618 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5004 1.4440 -0.1163 5 6 4.2766 1.5046 1.0095 6 1 5.2244 0.9877 1.0404 7 6 3.8448 2.2312 2.1131 8 7 4.3372 1.9725 3.3036 9 14 2.5648 3.5755 1.9036 10 1 1.2167 3.0250 2.1948 11 1 2.8581 4.6887 2.8417 12 1 2.6021 4.0814 0.5080 13 6 4.0797 1.3858 -1.3318 14 8 5.2887 1.4854 -1.4355 15 6 3.2549 1.2028 -2.5282 16 6 3.7070 1.2476 -3.8182 17 6 2.7168 1.0393 -4.7483 18 6 1.4942 0.8399 -4.2413 19 6 0.2569 0.5965 -5.0665 20 6 -0.3381 -0.7656 -4.7040 21 6 -0.7704 1.6940 -4.7812 22 16 1.5232 0.8979 -2.5364 23 1 -0.3633 0.4436 -0.9270 24 1 -0.3634 -1.0245 0.0793 25 1 -0.3633 0.5811 0.8476 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7491 1.9307 0.9300 29 1 1.6079 1.9807 -0.8436 30 1 4.0356 2.4793 4.0738 31 1 4.7395 1.4260 -4.0798 32 1 2.9104 1.0404 -5.8108 33 1 0.5176 0.6091 -6.1247 34 1 -0.5990 -0.7781 -3.6457 35 1 -1.2334 -0.9414 -5.3006 36 1 0.3936 -1.5474 -4.9072 37 1 -1.0311 1.6815 -3.7229 38 1 -0.3464 2.6645 -5.0395 39 1 -1.6651 1.5182 -5.3784 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354701270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:23 Heat of formation + Delta-G solvation = -0.451140 kcal Electronic energy + Delta-G solvation = -20699.133633 eV Core-core repulsion = 17733.792548 eV Total energy + Delta-G solvation = -2965.341085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.03226 -37.88815 -35.67695 -34.78690 -33.07976 -31.68704 -28.83714 -27.26845 -26.17649 -25.57819 -23.71164 -21.61205 -21.13221 -20.46613 -18.28266 -17.24010 -17.09596 -16.14849 -15.30461 -14.96493 -14.46826 -14.30916 -14.29626 -13.62424 -13.58595 -13.35378 -13.01087 -12.64749 -12.50722 -12.41922 -12.12944 -11.94170 -11.79428 -11.51468 -11.27415 -11.19067 -11.12508 -11.07277 -10.95027 -10.60478 -10.29408 -9.96970 -9.84440 -9.21146 -8.69075 -8.20307 -7.98632 -7.81314 -6.51644 -4.01283 1.03821 1.98506 2.42465 2.86332 2.96956 3.16278 3.19695 4.02647 4.09210 4.29016 4.66560 4.84314 4.88521 5.05936 5.21555 5.38135 5.39438 5.41074 5.48311 5.60330 5.68229 5.69838 5.73455 5.76770 5.86055 5.93554 5.99006 6.05997 6.11730 6.12705 6.23079 6.41778 6.44290 6.62856 6.70550 6.83314 7.42770 8.14795 8.40456 8.84322 9.18174 9.66236 10.59480 Molecular weight = 281.12amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.006687 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.509697 B = 4186.112495 C = 4764.768392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.074 3.926 4 N -0.451 5.451 5 C -0.306 4.306 6 H 0.112 0.888 7 C 0.060 3.940 8 N -0.853 5.853 9 Si 0.872 3.128 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.521 3.479 14 O -0.558 6.558 15 C -0.235 4.235 16 C -0.088 4.088 17 C -0.146 4.146 18 C -0.254 4.254 19 C -0.021 4.021 20 C -0.147 4.147 21 C -0.147 4.147 22 S 0.227 5.773 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.277 0.723 31 H 0.144 0.856 32 H 0.128 0.872 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 -2.815 -12.417 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.051 4.051 4 N -0.171 5.171 5 C -0.434 4.434 6 H 0.130 0.870 7 C -0.147 4.147 8 N -0.489 5.489 9 Si 0.700 3.300 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.186 1.186 13 C 0.310 3.690 14 O -0.441 6.441 15 C -0.356 4.356 16 C -0.120 4.120 17 C -0.177 4.177 18 C -0.372 4.372 19 C -0.041 4.041 20 C -0.204 4.204 21 C -0.205 4.205 22 S 0.496 5.504 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.162 0.838 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.138 -2.872 -11.151 18.234 hybrid contribution 0.468 0.969 -1.168 1.588 sum -13.671 -1.903 -12.318 18.500 Atomic orbital electron populations 1.21790 0.95502 1.01901 1.01444 1.22090 0.95721 0.97336 1.03572 1.22221 0.83580 0.97511 1.01781 1.43665 1.03820 1.64043 1.05523 1.19131 1.05404 1.30802 0.88052 0.87035 1.25349 0.97651 0.96930 0.94776 1.69724 1.42596 1.38206 0.98360 0.87038 0.80841 0.82713 0.79436 1.19793 1.21019 1.18627 1.16912 0.87304 0.83410 0.81339 1.90694 1.13548 1.54715 1.85154 1.25164 0.97239 1.14314 0.98882 1.20564 1.00673 1.00416 0.90381 1.19796 0.91613 1.05946 1.00332 1.24881 0.99016 1.09793 1.03487 1.19607 0.90834 0.95503 0.98196 1.21920 1.00529 0.96173 1.01812 1.21927 0.98154 0.98475 1.01932 1.84053 1.04172 1.65762 0.96388 0.92812 0.92174 0.92428 0.90848 0.89932 0.89846 0.91225 0.91289 0.83820 0.85448 0.90289 0.92326 0.92319 0.92277 0.92393 0.92315 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.66 37.16 0.36 -1.59 16 2 C -0.15 -2.54 5.18 -26.73 -0.14 -2.68 16 3 C 0.07 1.53 3.57 -4.05 -0.01 1.51 16 4 N -0.45 -11.25 2.25 -116.37 -0.26 -11.51 16 5 C -0.31 -8.67 9.42 -15.01 -0.14 -8.81 16 6 H 0.11 3.52 7.89 -52.48 -0.41 3.11 16 7 C 0.06 1.64 5.33 -17.45 -0.09 1.54 16 8 N -0.85 -24.13 13.96 55.50 0.77 -23.36 16 9 Si 0.87 20.30 24.79 -169.99 -4.21 16.08 16 10 H -0.27 -5.74 6.68 56.52 0.38 -5.36 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.26 -6.16 7.10 56.52 0.40 -5.75 16 13 C 0.52 13.05 7.55 -12.95 -0.10 12.96 16 14 O -0.56 -15.95 16.71 5.15 0.09 -15.87 16 15 C -0.24 -4.76 6.10 -36.80 -0.22 -4.99 16 16 C -0.09 -1.59 10.02 -40.40 -0.40 -1.99 16 17 C -0.15 -2.18 9.95 -41.41 -0.41 -2.59 16 18 C -0.25 -3.54 4.95 -35.85 -0.18 -3.71 16 19 C -0.02 -0.23 3.25 -91.77 -0.30 -0.53 16 20 C -0.15 -1.41 9.08 37.16 0.34 -1.07 16 21 C -0.15 -1.43 9.08 37.16 0.34 -1.09 16 22 S 0.23 3.56 12.59 -107.50 -1.35 2.20 16 23 H 0.05 0.63 6.53 -51.93 -0.34 0.29 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.25 5.80 -36.46 -0.21 1.04 16 27 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.08 1.79 2.92 -51.93 -0.15 1.63 16 29 H 0.07 1.32 4.86 -25.08 -0.12 1.20 16 30 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.14 2.57 8.06 -52.49 -0.42 2.14 16 32 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.08 0.77 8.07 -51.93 -0.42 0.36 16 34 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.03 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.58 7.90 -51.93 -0.41 0.16 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -31.19 317.61 -6.59 -37.79 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.44 Total: 2.91 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -0.97 Total: -13.04 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.51 Total: -34.87 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.87 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.21 Total: 16.08 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.35 Total: 2.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.19 -6.59 -37.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354701270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.335 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds